LOCUS       NM_001399283            3685 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus forty-two-three domain containing 1 (Fyttd1),
            mRNA.
ACCESSION   NM_001399283 XM_039088497
VERSION     NM_001399283.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Hautbergue,G.M., Hung,M.L., Walsh,M.J., Snijders,A.P., Chang,C.T.,
            Jones,R., Ponting,C.P., Dickman,M.J. and Wilson,S.A.
  TITLE     UIF, a New mRNA export adaptor that works together with REF/ALY,
            requires FACT for recruitment to mRNA
  JOURNAL   Curr Biol 19 (22), 1918-1924 (2009)
   PUBMED   19836239
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Jan 5, 2022 this sequence version replaced XM_039088497.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.41455.1,
                                           SRR26643298.67055.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               JAXUCZ010000011.1  81412368-81412551   c
            185-313             JAXUCZ010000011.1  81404470-81404598   c
            314-462             JAXUCZ010000011.1  81397234-81397382   c
            463-575             JAXUCZ010000011.1  81393154-81393266   c
            576-672             JAXUCZ010000011.1  81390435-81390531   c
            673-734             JAXUCZ010000011.1  81390007-81390068   c
            735-809             JAXUCZ010000011.1  81388659-81388733   c
            810-936             JAXUCZ010000011.1  81386921-81387047   c
            937-3685            JAXUCZ010000011.1  81383040-81385788   c
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..3685
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /note="forty-two-three domain containing 1"
                     /db_xref="GeneID:360726"
                     /db_xref="RGD:1306899"
     exon            1..184
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..1035
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /note="protein 40-2-3; forty-two-three domain-containing
                     protein 1"
                     /codon_start=1
                     /product="UAP56-interacting factor"
                     /protein_id="NP_001386212.1"
                     /db_xref="GeneID:360726"
                     /db_xref="RGD:1306899"
                     /translation="MNRFGTRLVGATATTPPAPKARSNENLDKIDMSLDEIIKLNRKE
                     GKKQSFPRLNRRLQQSGARQLRMRVRWGVQQSSGFGKTSVSRRGRVLPGKRRPYGVIT
                     GLAARKATGIRKGISPMNRPPLSDKNIERYFPALKRKTSLLRQNEVQRKPVAVLKRPN
                     QLNRKNNIPANFTRSGNKLSHQKDTRQATFLFRRGLKVQTQLNTEQLIDDVVAKRTRQ
                     WRTSTTNGGILTVSIDNPGAVQCPVTQKPRLTRTAVPSFLTKREQSDVKKIPKGVPLQ
                     FDINSVGKQTGMTLNERFGILKEQRAALPFSKGGSRFVTVG"
     exon            185..313
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            314..462
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            463..575
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            576..672
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            673..734
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            735..809
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            810..936
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
     exon            937..3685
                     /gene="Fyttd1"
                     /gene_synonym="Ac1176; RGD1306899"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtctgcgtg cgtgagtggg aggcggcggg cctgcgactg tggccttccc ggctgactgc
       61 tccgacgccg catccccagt catgaaccgg tttggcaccc ggttggtggg agccacggcg
      121 accacgccgc cggcgccgaa agcacgaagc aatgagaacc tcgacaaaat cgatatgtcc
      181 ctggatgaaa ttatcaaatt gaatagaaag gaaggaaaga agcaaagttt tccaagactg
      241 aatagaagac tccagcaaag tggtgcccgg caactcagga tgagagtgcg gtggggagtc
      301 cagcagagtt ctggttttgg taaaactagc gtgagccgta gaggaagagt attgccggga
      361 aagagacgtc cttatggagt catcactggc cttgcagcca ggaaagcaac tggtattcga
      421 aaaggaataa gccctatgaa tcgtccacct ctaagtgaca agaatataga acggtatttt
      481 ccagcattaa aaaggaagac aagccttctg agacaaaatg aagtgcaaag gaaacccgtt
      541 gccgttctca agagaccgaa tcagttaaac agaaaaaata acattccagc taattttacc
      601 aggagtggaa ataaattaag tcatcagaaa gacactcgtc aggcaacttt tcttttcaga
      661 agaggcctga aggttcagac ccagttgaac acagaacagc tgatagatga tgtggtagca
      721 aagagaacac gtcaatggcg aacttccacc acaaatggag gaattttgac tgtatccatt
      781 gacaatcctg gagctgtaca gtgtccggta actcagaaac cacgattaac tcgtactgct
      841 gtgccctcat tcttaacaaa aagagaacag tctgatgtta agaaaattcc taaaggagtc
      901 cctctacagt ttgacataaa tagtgtggga aaacagacag ggatgacgtt gaatgaacga
      961 tttggaatac tgaaagagca aagagccgcc ctccccttca gcaaaggagg aagccgcttc
     1021 gtgactgtag gataggtcca aggaactttt aagtttgact gtttgaaaag ttgatttgct
     1081 tgaagagttc atcggagaag ttcaagaaac tttacttcag aatattcaca agcctaaata
     1141 actttatttt tgaaggtttt ttttgttgtt gtttttttta atgtataaat aatgccctga
     1201 aagaatagca gggaatatac ctatctgttc ttaaagatgt catggttggc ccaaacaaag
     1261 cagctctctg ttgccttctt tggttcctca taaagcagaa ggaagacaga gagatagaaa
     1321 ttgattattt ttatgagcgt atttaggatc tcatcacttg tatccagttt ttgggctttg
     1381 ccatggtaaa tctgaagctg gaggactaag agtaacctcc gtgttgttgc ttacccactc
     1441 gtgtgctggt gtggcaagca cagctgcctt tctatcatta ctggtgtttt ttaaactgta
     1501 ggagaatttc ggttttgacg ttcgaggctt atggaaatat ttggaacttg gttcattttt
     1561 cagttattgt tagattaaat tccctgagtt ctaagcactt actactaaac ttttaataaa
     1621 aaatgtggct ctcaggatta gtctcaaacc aaaatgtgtc aggaccgtaa atgcttgttt
     1681 acaaagttat ctggtaggtc cttggaggag atacctaata caaaccctgg tagtttgtgt
     1741 ttagtgtaaa tggagacaac atgaaaggca tcagcacact gaaggattgg aaacgggaaa
     1801 aataaaaacc cgagtcatag ttagactatc tggatttact tctgtcttga atctagtgtt
     1861 catagattct tctgtaaatg atgcttacaa tttgtaaaac gagttgaatc cttgggtatt
     1921 ttgacagtac acttactaga taaaaagtcc tatgtttcat attcaaaagc ttttttaaag
     1981 cttctagact tgataagttc aataatttat aactccccaa acaaaaatct acttgtatat
     2041 gtcacaaaga aaaaaaaagc aaaattataa tgaagttaca ctttactgta cacattcact
     2101 ctgttccttc tatcactcag agttcaggca ttatagggag aaagggtttt ccttactgtg
     2161 tgaggtctgc tgtgccaaca tagtgctaag agtacttacg tagtcatagg tcatgaatta
     2221 cagtaaaatg ccaaaatgca gtgacaaatt ccagctacag atgatcaagt gtagccattt
     2281 tgaagtctga cctttagttt tgctatgatt tcgagtttga gtgggtgttt aagtctctgc
     2341 tgttgatttc tcctgtaaag acagagcact atacttcctg cccgccttca ttgtgtccta
     2401 gacttcattg tctttgatgt tcttcctggc ttgtgctagt cgtgggaaag tcagcaacaa
     2461 tgtcatgctt ataccaaaga tctaaatctt tcctcagccc agcatctgtg atctgctgta
     2521 cttgtacttg agagggggaa ggggtttgga ggctaatcac agaatttgaa agtaaactcc
     2581 agtttctcct tagctgtaat gcttttcatg gaggtcaagg actcattata aaacattttt
     2641 gccaatatga atatttatat ttggttcaga aacaaaacat tttagagtgg tttgctggta
     2701 gcttatttta aagcaaagga aaaacatctg agcatgaaca ctatctttgg aacagtttta
     2761 aaaatatgat agaaaagtct ttgtttcttg ttgttttaaa tattattata cagaggtatt
     2821 agtaattcca tttttggaaa atcttaaaaa tcgcccaaat gttgacatta agtacattga
     2881 acaacagtgt ctttggtata gaaaatgttt gctcttcatg catctgtaat ttaacttttg
     2941 ttcaaatttt gcctttgata caactaagtt aaaactcttt tgagtgctga catgttgtat
     3001 ataaacaaaa cactatgctt tgttggaggg aaatttcctt tctcggaatg tgactgtagt
     3061 aatccttgtt tggttcttgg agccttttat tttatttttt ttttatttaa acagggtgca
     3121 acttaagatt tcctttgcat caaggtgtat gcagaacatt gatgcagtgc atcacagtga
     3181 cgtttgtatt taacgaggag gcgctttaca ctgtactttt tggtgttttt tggaaaagtt
     3241 acattagatt tgttctgaag ctgttcattt ttaacaaata aaatgtaacg ggtttgacat
     3301 gagttattct gagctataaa gatagagttg tggtttttta gatggttctg tgttacagag
     3361 catcttgtgg ttttatttat gctttctggg atttgaagtc actgatcagc taaatctcca
     3421 ctcttggtat tcctctaact tttgaccatt tcatacatag gtgacatgag gttccaacac
     3481 gaggtcacgg aggaaaacta aggatagtta cattgttata atacagagca ggaagtggat
     3541 gagccccttc agatgacctg tgttagcccc tcttcttaca tcccagtaca gtgaccccaa
     3601 catttcctaa aacgtacata tagctgtcat gttttgagcc tcatgtctta taattctcag
     3661 tgaacaataa acgacttcac acata
//
