LOCUS       NM_001039337            1836 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus far upstream element binding protein 3 (Fubp3),
            mRNA.
ACCESSION   NM_001039337
VERSION     NM_001039337.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Zivraj,K.H., Rehbein,M., Olschlager-Schutt,J., Schob,C., Falley,K.,
            Buck,F., Schweizer,M., Schepis,A., Kremmer,E., Richter,D.,
            Kreienkamp,H.J. and Kindler,S.
  TITLE     The RNA-binding protein MARTA2 regulates dendritic targeting of
            MAP2 mRNAs in rat neurons
  JOURNAL   J Neurochem 124 (5), 670-684 (2013)
   PUBMED   23121659
  REMARK    GeneRIF: in neurons MARTA2 appears to represent a key trans-acting
            factor involved in dendritic targeting of MAP2 mRNAs.
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1836)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1836)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 1836)
  AUTHORS   Weber,A., Kristiansen,I., Johannsen,M., Oelrich,B., Scholmann,K.,
            Gunia,S., May,M., Meyer,H.A., Behnke,S., Moch,H. and Kristiansen,G.
  TITLE     The FUSE binding proteins FBP1 and FBP3 are potential c-myc
            regulators in renal, but not in prostate and bladder cancer
  JOURNAL   BMC Cancer 8, 369 (2008)
   PUBMED   19087307
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1836)
  AUTHORS   Davis-Smyth,T., Duncan,R.C., Zheng,T., Michelotti,G. and Levens,D.
  TITLE     The far upstream element-binding proteins comprise an ancient
            family of single-strand DNA-binding transactivators
  JOURNAL   J Biol Chem 271 (49), 31679-31687 (1996)
   PUBMED   8940189
REFERENCE   7  (bases 1 to 1836)
  AUTHORS   Wu,C., Narayan,P. and Puett,D.
  TITLE     Protein engineering of a novel constitutively active
            hormone-receptor complex
  JOURNAL   J Biol Chem 271 (49), 31638-31642 (1996)
   PUBMED   8940183
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ144645.1.
            
            [WARNING] On Oct 26, 2024 this sequence was replaced by
            NM_001039337.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ144645.1, FQ212354.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1836
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /note="far upstream element binding protein 3"
                     /db_xref="GeneID:362106"
                     /db_xref="RGD:1307004"
     CDS             1..1710
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /note="MAP2 RNA trans-acting protein 2; far upstream
                     element (FUSE) binding protein 3"
                     /codon_start=1
                     /product="far upstream element-binding protein 3"
                     /protein_id="NP_001034426.1"
                     /db_xref="GeneID:362106"
                     /db_xref="RGD:1307004"
                     /translation="MAELVQGQSAPVGLKAEDFVDALHRVRQIAAKIDSIPHLNNSTP
                     LVDPSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISR
                     IQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDG
                     NSTIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDP
                     FKVQQAREMVLEIIREKDQADFRGVRSDFTSRAGGGSIEVSVPRFVVGIVIGRNGEMI
                     KKIQNGTGVRIQFKPDDGISPERAAQVMGPPDRCQHAARIINELILTAQEREILGGLT
                     GTRGRGRGRGDWSVGTPGGIQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQR
                     NPPPNTDPNLRIFTIRGAPQQIEVARHLIDEKVGGASLGAPTAFGQSPFSQPPAAPHQ
                     NTFPPRAFPNIAAKVNGNPHSTPVSGPPAFLTQGWGSTYQAWQQPTQQVPSQQSQPQN
                     SQPDYSKAWEDYYKKQGHTTSAAPQASSPPDYTMAWAEYYRQQAAFYGQTLGQAQAHS
                     QEQ"
     exon            1..84
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            85..190
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            191..224
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            225..274
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            275..346
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            347..404
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            405..567
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            568..666
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            667..771
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            772..874
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            875..975
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1117
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1278
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1279..1352
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1353..1424
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1425..1501
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..1573
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1574..1701
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
     exon            1702..1836
                     /gene="Fubp3"
                     /gene_synonym="Marta2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggagc tggtgcaggg gcagagcgct ccggtgggct tgaaggctga ggacttcgtg
       61 gatgccctgc accgggtccg gcagattgct gctaaaatcg attcaattcc tcacttgaat
      121 aattccacac ccctggtgga cccctccgtg tacggatacg gagtacagaa acggcccttg
      181 gacgatggag taggtaacca gttaggggcc ttggtacatc aaagggcagt aataacagaa
      241 gaattcaagg tgcctgataa aatggttgga tttattattg gcaggggagg tgagcagatt
      301 tcacgaattc aagcagaatc tgggtgcaaa atccagattg cctcagagag ttctgggatt
      361 ccagagaggc cctgtgtact taccggaacc ccagaaagta ttgaacaagc caaacggctc
      421 ctggggcaga ttgtggaccg atgtcggaat gggcctggct ttcacaacga tatagatggc
      481 aacagcacaa tccaggagct tcttatccct gcatctaaag tggggctggt catcggcaaa
      541 ggaggggaaa caatcaagca gttgcaggag cggacaggtg tgaaaatggt catgatccag
      601 gatggcccgc tacccacagg agcagacaag cctctccgca tcactggaga tccatttaaa
      661 gtacagcaag caagagaaat ggtcttagaa atcatccgag agaaagacca ggctgacttc
      721 cggggcgtgc gcagtgactt cacctcccga gcgggaggag gtagtataga ggtgtctgtg
      781 cctaggtttg ttgttgggat tgtcatagga agaaacggag aaatgattaa gaagatccag
      841 aatggtactg gtgtgaggat ccagttcaaa ccagacgacg ggattagtcc agaaagagca
      901 gcacaggtca tgggccctcc agatcggtgt cagcatgcag cacgcatcat caatgagctc
      961 atcctcacgg cacaggaaag agagatcctt ggaggcctca cgggaacaag aggaagaggc
     1021 cgaggccgtg gcgattggag tgtgggcact cctggtggca tccaggaaat tacatacaca
     1081 gtgccagctg ataaatgcgg cctcgtgata ggcaaagggg gcgagaacat caaaagcatc
     1141 aaccagcaat caggtgccca cgtggagctg cagcggaacc cccctcctaa caccgaccct
     1201 aacctgcgga tatttaccat caggggtgct cctcagcaga tcgaggtggc caggcatctc
     1261 atagatgaga aagttggcgg tgccagcctc ggagccccta cagccttcgg acagagcccc
     1321 ttcagccagc caccagctgc accacatcaa aacacctttc cccccagggc cttccccaac
     1381 atcgctgcta aagttaacgg gaacccccac agcacccctg tgagcggccc tccagctttt
     1441 ctgacccaag gctggggcag cacttaccag gcttggcagc agcctacaca gcaagtccca
     1501 agccagcaga gccagccaca gaacagccag cccgactaca gcaaggcctg ggaagactat
     1561 tacaaaaaac agggtcacac caccagtgct gccccacagg ccagctcccc cccagactac
     1621 acgatggcct gggccgagta ctacaggcag caggccgcct tctatgggca gactttaggg
     1681 caggctcagg cccacagcca ggagcagtag atgggcatct gccgcggctc ttccccgaaa
     1741 tcagtgtgag agaaacctgt ttgttacaga gatttttaga tttgcaaacc tttcgatgaa
     1801 gacctttgtt ttgttctgtg aaacactata tttaga
//
