LOCUS       XM_008761555            6688 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus far upstream element binding protein 1
            (Fubp1), transcript variant X19, mRNA.
ACCESSION   XM_008761555
VERSION     XM_008761555.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761555.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761555.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6688
                     /gene="Fubp1"
                     /note="far upstream element binding protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 72 ESTs, 5 long SRA reads, 9 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 155 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:654496"
                     /db_xref="RGD:1591892"
     CDS             155..2119
                     /gene="Fubp1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X16"
                     /protein_id="XP_008759777.1"
                     /db_xref="GeneID:654496"
                     /db_xref="RGD:1591892"
                     /translation="MADYSTVPPPSSGSAGGGGGGGVNDAFKDALQRARQIAAKIGGD
                     AGTSLNSNDYGYGGQKRPLEDGDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYK
                     VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
                     DQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMI
                     QDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV
                     PIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEI
                     ITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG
                     ETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPL
                     GPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGN
                     AYPHWQQQAPPDPAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGN
                     YGDQQNPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAY
                     YAQTSPQGMPQHPPAPQGFANHARSHHHLY"
ORIGIN      
        1 gggatttccg tctcctagtc tccgcccctt tacggcacga tggtcgtgca agaatgtgat
       61 acagcctcga cggccgccat cttatttctt tcttagcagt tagccgagag gggaacctcc
      121 gcgaggaaac agcggcgtct tctatagcgt gggtatggcc gactactcaa cagtacctcc
      181 gccgtcttct ggctcagctg gcggcggcgg cggcggagga gttaatgatg ctttcaaaga
      241 tgccctgcag agagcgcggc agattgcagc aaaaattggg ggtgatgctg gtacatcatt
      301 gaattcaaat gactatggtt atgggggaca aaagagaccc ttagaagatg gagatcaacc
      361 agatgctaag aaagtacctc cccaaaatga ttcttttgga gcacagttac ctccaatgca
      421 tcagcaacaa agcagatctg taatgacaga agaatacaaa gttccagatg gaatggttgg
      481 atttataatt ggcagaggag gtgaacagat ctcacgcata cagcaggaat ctggatgcaa
      541 aatacagata gctcctgata gtggtggcct tccagaaagg tcttgtatgc taacgggaac
      601 gcctgaatct gttcaatcag caaaaagatt attggaccag atcgttgaaa agggaagacc
      661 agcccctggc tttcatcatg gtgatggacc tggcaatgca gttcaggaaa tcatgattcc
      721 agccagcaaa gcaggactag ttatcggaaa gggaggagag actatcaaac aacttcagga
      781 aagggctggt gttaaaatgg ttatgattca agatgggcct caaaacactg gtgctgataa
      841 acctcttagg attacgggtg acccatacaa agttcagcaa gccaaggaaa tggtattaga
      901 attaattcgc gatcaaggtg gtttcagaga agtgcggaat gagtatggct ccagaatagg
      961 aggaaatgaa gggatagatg tcccaattcc aagatttgct gttggcattg taataggaag
     1021 aaatggagaa atgattaaaa aaatacaaaa tgatgctggt gttcgaattc agtttaagcc
     1081 agatgatgga acaacacctg atagaatagc acagataaca ggacctccag acagatgtca
     1141 gcatgctgca gaaattatca cagaccttct acgaagtgtt caggctggca atcctggtgg
     1201 acctggacct ggtggtcgag gacgaggtcg aggtcaagga aactggaata tgggacctcc
     1261 tggtggactt caggaattta atttcattgt gccaactggg aaaactggat tgataattgg
     1321 aaaaggagga gaaacaataa aaagcataag ccagcagtcc ggtgcaagaa tagaacttca
     1381 gagaaaccct ccacctaatg cagatcccaa tatgaagtta tttacaattc ggggcactcc
     1441 acagcaaata gactatgctc gacaactcat agaagagaag attgggggcc cagtaaatcc
     1501 tttagggcca ccagtacccc atggacctca tggggttcca ggtcctcatg ggcctcctgg
     1561 acctccaggg cctggaactc caatggggcc atacaaccct gcaccttata atccaggacc
     1621 tcctggccca gctcctcatg gtcctccagc cccatatgct ccccagggat ggggaaatgc
     1681 atatccacat tggcagcagc aggctcctcc tgacccagct aaggcaggaa cggatccaaa
     1741 ctcggcagct tgggctgcct attatgccca ctattaccag cagcaggcac agcccccgcc
     1801 tgcagctcct gctggagcac caaccacaac ccagactaat ggacaaggta actacggaga
     1861 tcagcagaat ccagctccag ctggacaagt tgattataca aaggcttggg aagagtacta
     1921 caagaaaatg ggtcaagcag ttcctgctcc tgctggggcc ccaccaggtg gtcagccaga
     1981 ttacagtgca gcctgggctg aatactatag acagcaagca gcatactatg cccagaccag
     2041 tccccaggga atgccgcagc atccgccagc acctcaggga tttgcaaatc atgcaagaag
     2101 ccaccatcat ttatattaac cagtttttct ttcttaaagg attcactcct gaattagctc
     2161 catttaaagg attttcttta actttttgtg tatctcttat gtatctcttc tgcacagggc
     2221 caataataag aagtggacaa tacagtattt gcttcattgt gtgggggaaa aaacctttgt
     2281 taaatatatg gatgcagacg acttgatgaa gatcttaatt ttgtttttgg tttaaagtag
     2341 tgtttttttc ccccctcttt tttttatttt gaaaatgtac aaaatatcta tcactactga
     2401 taggaggtta atatttctgt gtagaaatga aaattggttt gtttcagtct ttagtgtaga
     2461 tgtacacatt ccagcaaatg tatttgcaac tattatgtgg tcgatgcttt gtgatataaa
     2521 tgtacttttt caatgtatac tttcactttt caatgcctgt tttgtgcttt acaataaatg
     2581 atatgaaacc tcctgtgtcg gtaagttgga tatgtgggta acggatgcat agctacttag
     2641 cagtgatgaa ttaagatcca tgtacacaat ataagctttt ccccatgaat taccgagttt
     2701 ttaaacactg gcatgttttt ccccgttgga gtatagtggt agattggagg ttcttttctg
     2761 ttgtatttgg ctatttcagc acaagtaatc ttgatatctt catttttttc cttctatttg
     2821 attaaaaagc tgcatgtgta tacgatgatc tttagtatcg tccattgcat taacagtgaa
     2881 atttcctttt atacatgagc actgtttcag acctgtactg ctgctacaac agctaacctt
     2941 cctgttcttc acttactgcc aagactgttt cagcataact aattttgaac agttttcaga
     3001 cagtgatttg aggagtttat aagaaacatt gtttttccat gtaaagcaac tctttcaatg
     3061 tatatatcta tataatagtg tgtttctttt taaattcagg atagaaaagt aatagaatgc
     3121 gaaagtatag ctacattgca cctgccattg aaacatttgg ggtatgaaaa tgttcaagct
     3181 ttttttttct ttttgcagta tagataagct ttgtcttgta attgcacaag tccagtcatt
     3241 gaatcaaatt aattttttat gtacttgaat cattttatta atctttaaca ttcatgctga
     3301 agttgatatt ttgttgaaaa ccattgtttt actctgcata tttgttggct ctttgcatat
     3361 taatatatta gactacatgc aaatacagtc tgtcttgcca ttgtctgttg aagtgcaggt
     3421 ttgatccagc cagtatagaa ctagctctgt aggggtgagg aggactgtgc tgtgtatcat
     3481 ccttgattgt gttccttcaa ggagcattgc actgtaagta catcagaatg acaaattgat
     3541 gaactgcaac agtatctttt tgtcgatgtt ccacataatg caattgctat attttgtgtg
     3601 actattatgt tggaatacag tgctgatacc atggaaaacc ataactgctt cttaacatag
     3661 aataatacat agttctgtat ttttttttta agtgagctta atgggtaagt atttttgata
     3721 tgctttagct aatagctaaa gaaaaatgat cattaacaaa gttgaatagt attatcagtg
     3781 ctcctaaaat gctgtttttc agtgtaaaat atgcatatct tttatagtga tatgaaaaac
     3841 ttgaaatgtt taagacagag tggttttcag tttgcaaaat ttaagcaatg taggacttaa
     3901 caccttttcc taaatgttct atcatctgtg gggagcacca ttcatatgag gacaaaaatg
     3961 ttgaggttat agggcagaaa acaaacagta cagctcattg tggatgtttt gaaatgtttt
     4021 tgattgtttt atgtacctca gtgacttccc ttacccttat ttagatccgg atacatagtt
     4081 ccagtatgaa gcttaatagt aatagttaag gagttatctg ttaagatctt aagtgtaggg
     4141 tattgacgtg aacaatttca gtattttgca tgatgttgtt gcatagatga ctaggaaagt
     4201 tgtggtgcat ttagtaatta aactgaagga aatagttgga ttcagtatca taattcacaa
     4261 attggaggct gttgattttg attcgtttaa aatttaaaat ctttattaat tgcaaacagt
     4321 gcaattattt atacttcaca gtgccttccc agaccttcca ccttaggttc tgctgcaaaa
     4381 agcaacaggt aagcacaacc taaggacata tataaatata tcagtacatt aatgttgtcc
     4441 ctgtgaggtt tttgtggttg tgtactcaaa agcaatctgc tgctgcttcc ccaaatgtac
     4501 tttgtcatct atggtaccat attctagcgc acagtctgta ggtcgttcaa gcaactgttt
     4561 acagttttgg gtaatgtttt tttttttcca ttaaaataaa atcagtagat tgctgcaata
     4621 actgaaaaat ccaaatcttt ttgtacaccc caacccccag ttatagaaat gttacagtaa
     4681 gaactattaa atagttgaca cttaggaaat cattttgtca gaaatttcaa cagccttcac
     4741 agcctgtctg tatgaataac aggaaatttt ctttgccctc caaatctttg accttttcat
     4801 cgtttttttt ccccctgtat tattactgct ttaaactata gtaattcagt aagaacattt
     4861 tgattagttt catagacagt tctattttca tgacttgtat ttgccgacaa ggaagaataa
     4921 agaatactgg cagtaagttt tgaaaaaagg catgtgcatc agtgaaatgt taattgtgta
     4981 gcaaataacc tttcataatc tgcatagcca atagtttctg atttataata ttttaataac
     5041 tgacgctgca tttatttgtt gccagtttag agtgtttgtg tttaggaatg ctgttgaact
     5101 agtgcataat tgagttaaat gactatctta aagcagcacc tatccgttgt ctcttcattt
     5161 tctaaatgtg ctgatcctat taaaactcct gcttatcttg acaacaaaga aaaatattca
     5221 aaaatgctgc cttcatttcc acacacagtg ctgaagatgc tgcaagcacc aaagctagca
     5281 taagatcagg ccctgaggta gttccctaag aggaaggaag gagccttgag tgtatgccat
     5341 tggtgagccg atgagcatgg accgtagaag ggctcaatgt agaaggtaaa actggcaaat
     5401 cataatcgag aaatatgaac tgtattccca tacataatat ggtatagggt gtaatgttcc
     5461 tgctcttgat cactttgcat tttaaagtgc tattcactta aatgttccat gaactgttta
     5521 agtttatagt tattgcacca cagtgtatgc gtgtgcgtgc gagagagaga gagagagaga
     5581 gagagagaga gagagagaga gagagagagg ggtcaggtca gtatgttgca agcagatctt
     5641 tagagcctat caagttttgg ttagttgtag tttctgtttg caaatctggg atgaatggtt
     5701 gtagatacta gagactgttt gtatcttgta agaactttta attcattacc ataaaccact
     5761 ggtactgtaa gcattttaaa tagcaccagt cttaaccttt atatggaaag cagaaaaggt
     5821 gagccaattg ctacgaatgg ggcagatttt aaaattggta gaaaattgaa tggtttagat
     5881 tgaaagtaaa ctcaattaaa agtttacaga ttattttaaa tgccatacat gttagtgtag
     5941 tgatatctag aattctttga tgtatgtctc agaaatgcat atattagaga atcattttaa
     6001 tattaaaact ggtgacttga gattattgta aaatgttttc ttaaatatct tggtacttaa
     6061 tggctttaga taggagttag caagtgctct cggggaagtt tttgttcact tgaatacttt
     6121 cccattacaa gttcttcctg aaaatagtta catgtctagt gtactgatgt agaattaact
     6181 cactaaagat aatctcgttt tagttctgca aattttgctt ggctttaaaa tgcattttta
     6241 taatacttag aaataatttt ggctgaaaat aactcgttta atcagtcaac ttactacaaa
     6301 tttgagggat ttttttattt aaactggtgc tttaaagaag caaattgatc cctgggtttt
     6361 attttcttca gtgataaccc taaagaaact ctttaatgtg tttgcgagta tatatatttt
     6421 cttatgcatg ctcgatgcat tttcgtcctg agaaaagtgt tctctacaga aactacccgt
     6481 gtgttaacag aagattggct taaatggcta ctgtgatggg aacagtgtct tagggagatg
     6541 cagcttggac ttgaggtaaa ttgaatactt tacaaactgg cttagagttt ttgctttcat
     6601 gacattgtat gtaaagggta catgactgtt gtaattttgt attctttatg gtttctttaa
     6661 ttaaataaat gtacagtgat tactatta
//
