LOCUS       XM_006233513            6679 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus far upstream element binding protein 1
            (Fubp1), transcript variant X21, mRNA.
ACCESSION   XM_006233513
VERSION     XM_006233513.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233513.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006233513.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6679
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6679
                     /gene="Fubp1"
                     /note="far upstream element binding protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 71 ESTs, 3 long SRA reads, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 155 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:654496"
                     /db_xref="RGD:1591892"
     CDS             155..2110
                     /gene="Fubp1"
                     /codon_start=1
                     /product="far upstream element-binding protein 1 isoform
                     X18"
                     /protein_id="XP_006233575.1"
                     /db_xref="GeneID:654496"
                     /db_xref="RGD:1591892"
                     /translation="MADYSTVPPPSSGSAGGGGGGGVNDAFKDALQRARQIAAKIGGD
                     AGTSLNSNDYGYGGQKRPLEDGDQPDAKKVPPQNDSFGAQLPPMHQQQSRSVMTEEYK
                     VPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLL
                     DQIVEKGRPAPGFHHGDGPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMI
                     QDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQGGFREVRNEYGSRIGGNEGIDV
                     PIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPDRIAQITGPPDRCQHAAEI
                     ITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG
                     ETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNPL
                     GPPVPHGPHGVPGPHGPPGPPGPGTPMGPYNPAPYNPGPPGPAPHGPPAPYAPQGWGN
                     AYPHWQQQAPPDPAKAGTDPNSAAWAAYYAHYYQQQAQPPPAAPAGAPTTTQTNGQGD
                     QQNPAPAGQVDYTKAWEEYYKKMGQAVPAPAGAPPGGQPDYSAAWAEYYRQQAAYYAQ
                     TSPQGMPQHPPAPQGFANHARSHHHLY"
ORIGIN      
        1 gggatttccg tctcctagtc tccgcccctt tacggcacga tggtcgtgca agaatgtgat
       61 acagcctcga cggccgccat cttatttctt tcttagcagt tagccgagag gggaacctcc
      121 gcgaggaaac agcggcgtct tctatagcgt gggtatggcc gactactcaa cagtacctcc
      181 gccgtcttct ggctcagctg gcggcggcgg cggcggagga gttaatgatg ctttcaaaga
      241 tgccctgcag agagcgcggc agattgcagc aaaaattggg ggtgatgctg gtacatcatt
      301 gaattcaaat gactatggtt atgggggaca aaagagaccc ttagaagatg gagatcaacc
      361 agatgctaag aaagtacctc cccaaaatga ttcttttgga gcacagttac ctccaatgca
      421 tcagcaacaa agcagatctg taatgacaga agaatacaaa gttccagatg gaatggttgg
      481 atttataatt ggcagaggag gtgaacagat ctcacgcata cagcaggaat ctggatgcaa
      541 aatacagata gctcctgata gtggtggcct tccagaaagg tcttgtatgc taacgggaac
      601 gcctgaatct gttcaatcag caaaaagatt attggaccag atcgttgaaa agggaagacc
      661 agcccctggc tttcatcatg gtgatggacc tggcaatgca gttcaggaaa tcatgattcc
      721 agccagcaaa gcaggactag ttatcggaaa gggaggagag actatcaaac aacttcagga
      781 aagggctggt gttaaaatgg ttatgattca agatgggcct caaaacactg gtgctgataa
      841 acctcttagg attacgggtg acccatacaa agttcagcaa gccaaggaaa tggtattaga
      901 attaattcgc gatcaaggtg gtttcagaga agtgcggaat gagtatggct ccagaatagg
      961 aggaaatgaa gggatagatg tcccaattcc aagatttgct gttggcattg taataggaag
     1021 aaatggagaa atgattaaaa aaatacaaaa tgatgctggt gttcgaattc agtttaagcc
     1081 agatgatgga acaacacctg atagaatagc acagataaca ggacctccag acagatgtca
     1141 gcatgctgca gaaattatca cagaccttct acgaagtgtt caggctggca atcctggtgg
     1201 acctggacct ggtggtcgag gacgaggtcg aggtcaagga aactggaata tgggacctcc
     1261 tggtggactt caggaattta atttcattgt gccaactggg aaaactggat tgataattgg
     1321 aaaaggagga gaaacaataa aaagcataag ccagcagtcc ggtgcaagaa tagaacttca
     1381 gagaaaccct ccacctaatg cagatcccaa tatgaagtta tttacaattc ggggcactcc
     1441 acagcaaata gactatgctc gacaactcat agaagagaag attgggggcc cagtaaatcc
     1501 tttagggcca ccagtacccc atggacctca tggggttcca ggtcctcatg ggcctcctgg
     1561 acctccaggg cctggaactc caatggggcc atacaaccct gcaccttata atccaggacc
     1621 tcctggccca gctcctcatg gtcctccagc cccatatgct ccccagggat ggggaaatgc
     1681 atatccacat tggcagcagc aggctcctcc tgacccagct aaggcaggaa cggatccaaa
     1741 ctcggcagct tgggctgcct attatgccca ctattaccag cagcaggcac agcccccgcc
     1801 tgcagctcct gctggagcac caaccacaac ccagactaat ggacaaggag atcagcagaa
     1861 tccagctcca gctggacaag ttgattatac aaaggcttgg gaagagtact acaagaaaat
     1921 gggtcaagca gttcctgctc ctgctggggc cccaccaggt ggtcagccag attacagtgc
     1981 agcctgggct gaatactata gacagcaagc agcatactat gcccagacca gtccccaggg
     2041 aatgccgcag catccgccag cacctcaggg atttgcaaat catgcaagaa gccaccatca
     2101 tttatattaa ccagtttttc tttcttaaag gattcactcc tgaattagct ccatttaaag
     2161 gattttcttt aactttttgt gtatctctta tgtatctctt ctgcacaggg ccaataataa
     2221 gaagtggaca atacagtatt tgcttcattg tgtgggggaa aaaacctttg ttaaatatat
     2281 ggatgcagac gacttgatga agatcttaat tttgtttttg gtttaaagta gtgttttttt
     2341 cccccctctt ttttttattt tgaaaatgta caaaatatct atcactactg ataggaggtt
     2401 aatatttctg tgtagaaatg aaaattggtt tgtttcagtc tttagtgtag atgtacacat
     2461 tccagcaaat gtatttgcaa ctattatgtg gtcgatgctt tgtgatataa atgtactttt
     2521 tcaatgtata ctttcacttt tcaatgcctg ttttgtgctt tacaataaat gatatgaaac
     2581 ctcctgtgtc ggtaagttgg atatgtgggt aacggatgca tagctactta gcagtgatga
     2641 attaagatcc atgtacacaa tataagcttt tccccatgaa ttaccgagtt tttaaacact
     2701 ggcatgtttt tccccgttgg agtatagtgg tagattggag gttcttttct gttgtatttg
     2761 gctatttcag cacaagtaat cttgatatct tcattttttt ccttctattt gattaaaaag
     2821 ctgcatgtgt atacgatgat ctttagtatc gtccattgca ttaacagtga aatttccttt
     2881 tatacatgag cactgtttca gacctgtact gctgctacaa cagctaacct tcctgttctt
     2941 cacttactgc caagactgtt tcagcataac taattttgaa cagttttcag acagtgattt
     3001 gaggagttta taagaaacat tgtttttcca tgtaaagcaa ctctttcaat gtatatatct
     3061 atataatagt gtgtttcttt ttaaattcag gatagaaaag taatagaatg cgaaagtata
     3121 gctacattgc acctgccatt gaaacatttg gggtatgaaa atgttcaagc tttttttttc
     3181 tttttgcagt atagataagc tttgtcttgt aattgcacaa gtccagtcat tgaatcaaat
     3241 taatttttta tgtacttgaa tcattttatt aatctttaac attcatgctg aagttgatat
     3301 tttgttgaaa accattgttt tactctgcat atttgttggc tctttgcata ttaatatatt
     3361 agactacatg caaatacagt ctgtcttgcc attgtctgtt gaagtgcagg tttgatccag
     3421 ccagtataga actagctctg taggggtgag gaggactgtg ctgtgtatca tccttgattg
     3481 tgttccttca aggagcattg cactgtaagt acatcagaat gacaaattga tgaactgcaa
     3541 cagtatcttt ttgtcgatgt tccacataat gcaattgcta tattttgtgt gactattatg
     3601 ttggaataca gtgctgatac catggaaaac cataactgct tcttaacata gaataataca
     3661 tagttctgta tttttttttt aagtgagctt aatgggtaag tatttttgat atgctttagc
     3721 taatagctaa agaaaaatga tcattaacaa agttgaatag tattatcagt gctcctaaaa
     3781 tgctgttttt cagtgtaaaa tatgcatatc ttttatagtg atatgaaaaa cttgaaatgt
     3841 ttaagacaga gtggttttca gtttgcaaaa tttaagcaat gtaggactta acaccttttc
     3901 ctaaatgttc tatcatctgt ggggagcacc attcatatga ggacaaaaat gttgaggtta
     3961 tagggcagaa aacaaacagt acagctcatt gtggatgttt tgaaatgttt ttgattgttt
     4021 tatgtacctc agtgacttcc cttaccctta tttagatccg gatacatagt tccagtatga
     4081 agcttaatag taatagttaa ggagttatct gttaagatct taagtgtagg gtattgacgt
     4141 gaacaatttc agtattttgc atgatgttgt tgcatagatg actaggaaag ttgtggtgca
     4201 tttagtaatt aaactgaagg aaatagttgg attcagtatc ataattcaca aattggaggc
     4261 tgttgatttt gattcgttta aaatttaaaa tctttattaa ttgcaaacag tgcaattatt
     4321 tatacttcac agtgccttcc cagaccttcc accttaggtt ctgctgcaaa aagcaacagg
     4381 taagcacaac ctaaggacat atataaatat atcagtacat taatgttgtc cctgtgaggt
     4441 ttttgtggtt gtgtactcaa aagcaatctg ctgctgcttc cccaaatgta ctttgtcatc
     4501 tatggtacca tattctagcg cacagtctgt aggtcgttca agcaactgtt tacagttttg
     4561 ggtaatgttt ttttttttcc attaaaataa aatcagtaga ttgctgcaat aactgaaaaa
     4621 tccaaatctt tttgtacacc ccaaccccca gttatagaaa tgttacagta agaactatta
     4681 aatagttgac acttaggaaa tcattttgtc agaaatttca acagccttca cagcctgtct
     4741 gtatgaataa caggaaattt tctttgccct ccaaatcttt gaccttttca tcgttttttt
     4801 tccccctgta ttattactgc tttaaactat agtaattcag taagaacatt ttgattagtt
     4861 tcatagacag ttctattttc atgacttgta tttgccgaca aggaagaata aagaatactg
     4921 gcagtaagtt ttgaaaaaag gcatgtgcat cagtgaaatg ttaattgtgt agcaaataac
     4981 ctttcataat ctgcatagcc aatagtttct gatttataat attttaataa ctgacgctgc
     5041 atttatttgt tgccagttta gagtgtttgt gtttaggaat gctgttgaac tagtgcataa
     5101 ttgagttaaa tgactatctt aaagcagcac ctatccgttg tctcttcatt ttctaaatgt
     5161 gctgatccta ttaaaactcc tgcttatctt gacaacaaag aaaaatattc aaaaatgctg
     5221 ccttcatttc cacacacagt gctgaagatg ctgcaagcac caaagctagc ataagatcag
     5281 gccctgaggt agttccctaa gaggaaggaa ggagccttga gtgtatgcca ttggtgagcc
     5341 gatgagcatg gaccgtagaa gggctcaatg tagaaggtaa aactggcaaa tcataatcga
     5401 gaaatatgaa ctgtattccc atacataata tggtataggg tgtaatgttc ctgctcttga
     5461 tcactttgca ttttaaagtg ctattcactt aaatgttcca tgaactgttt aagtttatag
     5521 ttattgcacc acagtgtatg cgtgtgcgtg cgagagagag agagagagag agagagagag
     5581 agagagagag agagagagag gggtcaggtc agtatgttgc aagcagatct ttagagccta
     5641 tcaagttttg gttagttgta gtttctgttt gcaaatctgg gatgaatggt tgtagatact
     5701 agagactgtt tgtatcttgt aagaactttt aattcattac cataaaccac tggtactgta
     5761 agcattttaa atagcaccag tcttaacctt tatatggaaa gcagaaaagg tgagccaatt
     5821 gctacgaatg gggcagattt taaaattggt agaaaattga atggtttaga ttgaaagtaa
     5881 actcaattaa aagtttacag attattttaa atgccataca tgttagtgta gtgatatcta
     5941 gaattctttg atgtatgtct cagaaatgca tatattagag aatcatttta atattaaaac
     6001 tggtgacttg agattattgt aaaatgtttt cttaaatatc ttggtactta atggctttag
     6061 ataggagtta gcaagtgctc tcggggaagt ttttgttcac ttgaatactt tcccattaca
     6121 agttcttcct gaaaatagtt acatgtctag tgtactgatg tagaattaac tcactaaaga
     6181 taatctcgtt ttagttctgc aaattttgct tggctttaaa atgcattttt ataatactta
     6241 gaaataattt tggctgaaaa taactcgttt aatcagtcaa cttactacaa atttgaggga
     6301 tttttttatt taaactggtg ctttaaagaa gcaaattgat ccctgggttt tattttcttc
     6361 agtgataacc ctaaagaaac tctttaatgt gtttgcgagt atatatattt tcttatgcat
     6421 gctcgatgca ttttcgtcct gagaaaagtg ttctctacag aaactacccg tgtgttaaca
     6481 gaagattggc ttaaatggct actgtgatgg gaacagtgtc ttagggagat gcagcttgga
     6541 cttgaggtaa attgaatact ttacaaactg gcttagagtt tttgctttca tgacattgta
     6601 tgtaaagggt acatgactgt tgtaattttg tattctttat ggtttcttta attaaataaa
     6661 tgtacagtga ttactatta
//
