LOCUS       NM_001013078            1694 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus fibrous sheath interacting protein 1 (Fsip1),
            mRNA.
ACCESSION   NM_001013078 XM_215818
VERSION     NM_001013078.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Mar 11, 2021 this sequence version replaced NM_001013078.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082080.1, SRR26360190.2856938.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on computational evidence
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               JAXUCZ010000003.1  125670926-125671135 c
            211-343             JAXUCZ010000003.1  125666971-125667103 c
            344-527             JAXUCZ010000003.1  125665588-125665771 c
            528-682             JAXUCZ010000003.1  125663430-125663584 c
            683-779             JAXUCZ010000003.1  125661996-125662092 c
            780-869             JAXUCZ010000003.1  125652958-125653047 c
            870-1027            JAXUCZ010000003.1  125651796-125651953 c
            1028-1138           JAXUCZ010000003.1  125649268-125649378 c
            1139-1294           JAXUCZ010000003.1  125645913-125646068 c
            1295-1429           JAXUCZ010000003.1  125637284-125637418 c
            1430-1694           JAXUCZ010000003.1  125620089-125620353 c
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..1694
                     /gene="Fsip1"
                     /note="fibrous sheath interacting protein 1"
                     /db_xref="GeneID:296074"
                     /db_xref="RGD:1306874"
     exon            1..210
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            211..343
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             218..1528
                     /gene="Fsip1"
                     /note="fibrous sheath-interacting protein 1-like"
                     /codon_start=1
                     /product="fibrous sheath-interacting protein 1"
                     /protein_id="NP_001013096.2"
                     /db_xref="GeneID:296074"
                     /db_xref="RGD:1306874"
                     /translation="MDIIKGNLDGISKPASSSRSRPGSRSSNGSLEVLSPEPGPVKID
                     MVNKLNSGKEGHTSDSRVEERRKISDDEWADNPRSTEPAQESSDEDSNLSQPQGTPEH
                     SDDPKLEGTDAVLQNAIHKMHRLDKILAKRRIREKEIKKQGLEMRIKLWEELKSAKNT
                     EDLENDEELENTKKFLYLTSKSAGTAAEPLHCKFEDDLFSVFHTQIPQETYENHTEKD
                     FTCDVEKNGPLIKTEKQPFSNTEAIEPRSEHSQVFIIRNAEHSQDFIKRNIELAKSSR
                     SPVVMVEGEKKRLDELLKGLEDTDSGLSSSEGDQCAWLVPGEGYTLAATESQQLAEID
                     IKLQELSVDSPAVFSLESQSNKGDMEHDSNEERNTEPTPGEKILRDNKEQRDRESRLR
                     AIDGKLKEINEQVEECPVITPGKRNERITWRWLLAKILEPECKV"
     exon            344..527
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            528..682
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            683..779
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            780..869
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            870..1027
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1138
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1294
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1295..1429
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
     exon            1430..1694
                     /gene="Fsip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgcgcgcgc ttctagttgc cagggcaaca gcgttccttg aagcagcccg ctgcctcttt
       61 catcttcaca gaggaggcgg tggcgggaaa accggtcccc ttcgaaggga agtgtatgac
      121 gctcgaatgt cagtggagcc agtcagtacc tagacgtcca gccatcgtcc ccacggaaaa
      181 gttgagggac cgcgtggacc acgggcagag gatgtcaatg gatattataa aaggaaacct
      241 agatggaatt tcaaaaccag cctcaagttc aagatcacgt cctgggagcc gaagttcaaa
      301 cggttctctg gaggtgctct cgccagaacc agggcctgtc aagattgaca tggtgaacaa
      361 gctgaattct ggcaaagagg gccacacatc ggacagtaga gtggaagaaa gaaggaagat
      421 cagtgacgac gagtgggcgg acaaccccag gagcacagaa ccagcccaag agagctcaga
      481 cgaagactcg aacctgagcc aacctcaggg gacccctgag cattcagatg atcccaagtt
      541 agaagggacg gatgctgtac ttcaaaatgc cattcataag atgcacagac tcgacaagat
      601 attggccaaa agacgaatta gagaaaagga aattaaaaag caaggcctag aaatgagaat
      661 taagctgtgg gaagagctca agtctgcaaa aaacactgaa gacttggaaa atgacgagga
      721 gctggaaaac actaaaaagt ttttgtactt gacttccaaa tctgcaggga cagcagctga
      781 gccattgcac tgcaaattcg aagatgacct tttctcagtg tttcatactc agattcctca
      841 ggaaacttac gaaaatcaca cggagaagga ctttacctgt gatgtggaga aaaatgggcc
      901 attgatcaaa acagaaaagc aaccgttttc aaatacagaa gcgattgagc ctaggagcga
      961 acacagccag gttttcatta tacggaacgc tgaacatagt caggatttta ttaagcgaaa
     1021 cattgagttg gccaagagtt caagaagccc agtggttatg gttgaaggag agaagaaacg
     1081 tctggatgag ctcctgaaag gcttagaaga tacagactca ggactgtcca gttccgaggg
     1141 cgatcagtgt gcttggctgg ttccaggaga aggctatacc cttgcagcca ccgagtctca
     1201 gcagcttgct gagattgaca taaagctcca ggagctctcc gtggactctc ctgccgtctt
     1261 cagccttgaa agtcagagca acaagggtga tatggaacat gactccaatg aagaaagaaa
     1321 tacggaacca actccagggg agaagatact ccgggacaac aaagagcaaa gggaccgtga
     1381 gtctcggctg agagccatcg atgggaagct gaaagagatc aatgaacagg ttgaggaatg
     1441 tccagtgata actcccggta aacggaatga gcggattacg tggagatggc tacttgctaa
     1501 aatccttgag cccgagtgta aggtgtaact attctcttta ttttttacaa tacatcatgg
     1561 ttctcaaagt gtgcatcttc gcaatgtaaa acttaattga tttggcaaat ccctattgta
     1621 tatctcactg acacaatgtg ctgtcctgat ccatgtgtac acagtaagat gattaaatag
     1681 agctaatgag ccca
//
