LOCUS       XM_039094910            5194 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FERM and PDZ domain containing 2
            (Frmpd2), transcript variant X1, mRNA.
ACCESSION   XM_039094910
VERSION     XM_039094910.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094910.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5194
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5194
                     /gene="Frmpd2"
                     /note="FERM and PDZ domain containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:498583"
                     /db_xref="RGD:1565652"
     CDS             175..4233
                     /gene="Frmpd2"
                     /codon_start=1
                     /product="FERM and PDZ domain-containing protein 2 isoform
                     X1"
                     /protein_id="XP_038950838.1"
                     /db_xref="GeneID:498583"
                     /db_xref="RGD:1565652"
                     /translation="MWLMAKDTGMSVASVTLASALQVRGEALSEEEIWSLLSLAAERL
                     LEDLRNDSSDYVVCPWSLLLSAAGSLSFQDNVSHIEAAPFKAPELLQGPDEEERPDAS
                     QTHVYSLGMTLYWSAGFRVPPKQPLQLQEPMHSLLLAMCEDQPRRRRPLQAVLEACRI
                     HQEEVAVYPAPASLHISRLVGLVLGTISEVERRVAEENACEQRNRSCFLRSRLHQADS
                     ESPGSRAPDALQPRRVSGRSTETQSSLERCWSTTAHSRSGFNSTFAGAGPCDCEEGPR
                     CGSGPMLLAEAESSKPATSSPRNFLHRKGKFSRPEFILLAAEAPVTLHLPGSIVTKKG
                     KSYLALRDLRVLLLNGQCLEVKCDVESTAGAVFNAVMSFANLGETTYFGLAYVKGEEF
                     FFLEPNTRLCKVAPEGWREQQPKSSVDTLTLFLRIKFFVSHYGLLRHSLTRHQFYLQL
                     RKDILEERLYCNDETLLQLGVLALQAEFGSYPKEQVEGETYFQIQDYIPARLIERMTA
                     IRVQVEVSEMHRLSPAPQGEDAELEFLEVVQQLPEYGVLVHRVSPAKKRQEGGMALGI
                     CTKGIIVYEVKGSRRTTTFQFPWRETGMISTHRRKLTVTSSTTGKKYTFVTDSAKTCK
                     YLLGLCSSQHWFNAHMGLEQPPHLLTGQDKFAQIASLNSAHQTQANPLTWIQKLSCSE
                     NELCVPRLQNATGGQLGTAMENMQGSKEPEMGRNRSSPYTGGEQLHSIGLNQRPTHTL
                     FGTAGHSTCAGSQKSKRKGFMDEPNGDIMCVMLKRDPLLGFGFVIYEGEDKEQSKTGI
                     FISSLIPGGPAERAKKIKPGGKILALNHISMEGFTFNMAVKMIQNSPDDIELIISQPK
                     GVCGDIPSEDKNSTASSGTFCTDILSNRCRGQQSAHTQDQDRNARGPETVQQGAGSCP
                     PSPLDAGEIYFVELVKEDGTLGFSVTGGINTSVPHGGIYVKSIIPGGPAAKEGQILQG
                     DRLLQVDGVSLCGLTHKQAVQCLKGPGQVAQLVLERRGPRAAPQCPSADDRMGEVHMA
                     VSLVTAKPGRPASRVSVTDGPKFEVKLKKNSSGLGFSFVQMERGNHIHVKSDLVRIKR
                     LFPGQPAEEHGAIAAGDIILAVNGKPIEGLAFQEVLHLLRGAPEEVTLLLCRPPPGIL
                     PEMEQGWQTPELSGDQRLTMATRAESEQSPSLDQEDNWRDSTSLDAGDGLSPRPESSY
                     KAEKEVKGDGDKQRPWARSLMHPMESHPHLCKLHPEPETPALATSLEKDMRQNCYSVC
                     DIRRLGSSSLTLDSEGYMALTSTSAGQLPCEECLEADSETIPLPRFCSSGALLKSSLP
                     EGSPGSESDWEDLDEPVDGDEVLRWTHSARVS"
ORIGIN      
        1 gacacactca ctgggcttag tgactgtcac cgagtgctta gtgacaaata gtaaacagag
       61 gcgaactctg cagggctggg tggtttcttc aggagagact ggcaggccat cgatccctgt
      121 gtactgctga gaagtctaaa gtgaaggtct agaccagctt gctgggacat ctggatgtgg
      181 ctgatggcaa aagacacagg catgagtgtg gcctctgtga cacttgctag tgccctgcag
      241 gtcagaggtg aagccctgtc tgaggaggaa atctggtccc ttttgtcact ggctgctgag
      301 cgactcctgg aagacctacg taatgattcc tcagactatg tggtctgccc ctggtcactc
      361 ctgctttctg cagccggaag tctttctttc caagacaacg tttctcacat agaggctgca
      421 ccattcaagg ctcccgaact gctacaggga ccagatgagg aagagcggcc tgacgcatct
      481 caaacgcatg tctactcctt agggatgact ctctactggt cagcggggtt tcgtgttcca
      541 ccaaagcagc ccctgcagct tcaagagcct atgcactccc tcctgctggc catgtgtgaa
      601 gaccagccac ggagacggcg gccactgcag gcggttctgg aagcctgccg gattcatcag
      661 gaagaggtgg ctgtgtaccc ggcccccgcc agtctccata tcagtcggct agtgggtttg
      721 gtgctgggca ccatctctga ggtggagagg agagttgcag aggaaaacgc ttgtgagcag
      781 cggaacagaa gctgctttct caggagcagg ctgcatcagg cagacagtga gagccccgga
      841 tctcgggccc ccgatgctct gcagcctcgg agagtttcag ggcgaagcac agagacacag
      901 agttccttgg agcgatgctg gagcaccaca gcgcacagtc gtagcggctt taacagcaca
      961 tttgcaggtg caggtccctg tgactgtgag gaaggtccac ggtgtggctc ggggcctatg
     1021 ctcttggcag aagcagaaag ctcaaagcca gcaacctctt ctccaaggaa ttttctgcac
     1081 agaaagggaa agttctccag accggagttc atcctgttgg ctgcagaggc ccctgtgacc
     1141 ctacatttgc ctggatccat tgtgaccaaa aaagggaaat cctacttggc tctcagagac
     1201 ctccgtgtgc tcttgctgaa cggacagtgt ctggaggtga agtgtgatgt ggagtccacg
     1261 gcaggagccg tcttcaatgc cgtcatgtcc ttcgccaacc ttggggagac cacatacttt
     1321 ggcttggctt acgtgaaagg tgaagagttc tttttcctgg agcccaacac cagattgtgc
     1381 aaagttgccc cagaaggctg gagagagcag cagccgaaaa gttccgtgga cactttaaca
     1441 ctctttctgc ggataaagtt tttcgtcagt cactatgggc tgctccggca cagcctgacg
     1501 aggcatcagt tttacctgca gctccggaaa gacattttag aagagaggct gtattgcaac
     1561 gatgagacgc tgctgcaact gggggtcctt gccctgcagg ctgagtttgg cagctatcct
     1621 aaggagcagg tggagggtga aacatacttc caaatccaag attacatccc ggcaaggctt
     1681 attgagcgga tgacagcaat ccgggtccaa gtagaagtct cagaaatgca ccgactcagt
     1741 cctgcaccac agggagagga tgctgagctg gagttcttag aggttgtcca gcaactccca
     1801 gaatatggag tcctggttca ccgtgtttcc ccagcaaaga agagacaaga agggggaatg
     1861 gccttgggga tctgcaccaa aggcatcatc gtctatgaag tgaaaggcag ccgcagaacc
     1921 acaacattcc agtttccatg gagagaaact gggatgatct caactcatag aaggaagctc
     1981 actgtcacca gcagcaccac cgggaaaaag tacacctttg tcacagattc agccaagacc
     2041 tgtaaatact tgctgggcct ttgctcttcc cagcattggt ttaatgcgca tatgggcttg
     2101 gagcagcctc cccatctttt aactggtcag gataagtttg cacaaatagc cagtttgaat
     2161 tctgcacacc agacacaggc caaccctctc acttggattc agaaactgtc ctgctcggaa
     2221 aatgagttgt gcgtacccag gctgcagaat gccacaggag gccaactggg cacagctatg
     2281 gagaacatgc aaggtagcaa ggagcccgag atggggagaa acagaagcag cccgtacact
     2341 ggcggagagc agctgcacag catcggtttg aaccagaggc caactcatac tctctttggg
     2401 acagctggtc acagcacgtg tgcagggtca cagaagagca agaggaaggg ctttatggac
     2461 gaacccaacg gcgacatcat gtgcgtgatg ctgaagcgag atccacttct tggctttggt
     2521 tttgtcattt atgagggaga agacaaagag caatcaaaga ctggcatttt catatcttcc
     2581 cttatacctg ggggaccagc agaaagagct aaaaagatca aaccaggagg gaagatacta
     2641 gccttgaatc atatcagcat ggaaggcttc acattcaaca tggctgttaa aatgatccag
     2701 aattctcctg acgacataga attaatcatt tctcagccaa aaggtgtttg tggggacatc
     2761 cccagtgaag ataagaacag cacggcaagt tctggcacat tctgtacaga catcctgagc
     2821 aacaggtgcc gggggcaaca gtcagcacac acacaggacc aggacagaaa tgccagagga
     2881 ccagaaacgg ttcagcaggg cgctggttct tgtcctccat cccctctgga tgctggtgaa
     2941 atctacttcg tggagctggt taaagaagat ggaacgcttg gattcagcgt cactggtggc
     3001 attaatacaa gtgtacctca tggaggaatc tatgtgaaat ctatcattcc tggaggccca
     3061 gctgccaagg aaggacagat cctgcaaggt gaccgactac tgcaggtgga tggagtgagt
     3121 ctgtgtggcc ttactcacaa gcaggcagtg cagtgtctca agggtcctgg gcaggtggca
     3181 cagctggtct tagagagaag aggccccagg gctgcaccac agtgtccttc tgctgatgac
     3241 aggatgggag aggtgcacat ggctgtttcc ctggtaacgg ccaagcctgg aagacctgcg
     3301 agccgtgtct cagtgacaga cggtcctaag ttcgaagtca aactgaagaa gaatagcagt
     3361 ggtttgggat tcagcttcgt gcagatggag agaggaaacc acatccacgt gaagagtgac
     3421 cttgtaagga ttaagaggct ctttcctgga cagccagctg aagaacacgg agccattgca
     3481 gctggtgaca ttatcttggc agtgaatgga aaacccatcg aaggccttgc tttccaggag
     3541 gtgctccatt tattgcgcgg ggctccagag gaagtgacgt tgctcctctg ccgtccccct
     3601 ccagggatac tgcctgagat ggagcagggg tggcagaccc ctgaactatc aggagaccaa
     3661 agactcacca tggcaacccg tgctgaatca gagcagagcc ccagcctaga tcaagaggac
     3721 aactggaggg acagcacctc tctggatgca ggagacggtc tgagtcccag gccagagtct
     3781 tcctacaagg ctgagaaaga ggtgaaggga gatggagaca aacagaggcc ctgggccagg
     3841 tctttgatgc atccgatgga gtcccatcct catttgtgca aactccaccc agaaccagag
     3901 acgccagcat tggccacctc gttggaaaag gatatgagac aaaactgcta ttccgtgtgt
     3961 gatatcagga gactgggaag ctcttccctc accttggact ctgaaggata catggccctc
     4021 acctccacat ccgcaggcca gctgccctgt gaagagtgtc tggaggcaga ctcagagact
     4081 attcctctgc ctcggttctg ttcttcgggt gctctcctga agtcttccct tccggaagga
     4141 tcaccaggga gtgagagtga ctgggaggac ctggatgagc ctgtggatgg ggatgaggtg
     4201 ctcaggtgga cacactcagc gcgagtctcc tgagatagaa ccccgaggga ttcttcacag
     4261 gcactctttt gtgggagagc cctcagctga cttccgtcca ggaaatgtac ctgtttgctc
     4321 atctcccctg gaagaagcat cttcgagcca acgggctagg ctggagctcc tgggctagtt
     4381 accaagggct aacttctgag agtttgtgcc tgttacttct gaggctcatc accattagta
     4441 gccacaactt cctcttccgt tctaaagctt aagtcaagca aatttttgtg tgtatggagt
     4501 aggtttcccc tcgtgaaggg aattgagaac taatttcttt acataagata agccggagca
     4561 gaggaagcgc ccggctgcca cgctggtgca ccgttttcca agatggatgc cacattctgg
     4621 tttaactgtc tcagtgtcct tgaaaacatc tggcaagggc tcaaaggcca cacaggaaat
     4681 atctttctgt attgattttt ccatgtcctt cctttagctc caaatagtca tgtgttcttt
     4741 ctaaaggatt tttcctcttt cgatcctaat gcctggttct catcacctag aaagtgaagt
     4801 gtagttgagc taccattact cgaggtggat aggtagctgc catcattaca agaatgaaaa
     4861 ctagtagaat taacacatgc atggaagaaa aagacctgtt gggccatagc gtaagtcatt
     4921 agtgtgaccc tgtataatgg agaagacata gcagagacaa ggtctcacat gagggaaatg
     4981 gggaaaatgt actaatataa tgagagtgtg cccgttatag gtcatgttct gccatgtagg
     5041 cctgttctgc tgcgcatgga aaagaaattc ccagcaatct gagtagccct tccttcagac
     5101 tgttacagct ccacatgctg ctgcatcatt ttataggcct cggctgtgga gaattaatta
     5161 actatgcaat aaaatgacta attaataaca ttta
//
