LOCUS       XM_039106826            5507 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FERM domain containing 5 (Frmd5),
            transcript variant X1, mRNA.
ACCESSION   XM_039106826
VERSION     XM_039106826.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106826.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5507
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5507
                     /gene="Frmd5"
                     /note="FERM domain containing 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 40
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 11 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:311362"
                     /db_xref="RGD:1561554"
     CDS             530..2329
                     /gene="Frmd5"
                     /codon_start=1
                     /product="FERM domain-containing protein 5 isoform X1"
                     /protein_id="XP_038962754.1"
                     /db_xref="GeneID:311362"
                     /db_xref="RGD:1561554"
                     /translation="MLSRLMSGSSRSLEREYSCTVRLLDDSEYTCTIQRDAKGQYLFD
                     LLCHHLNLLEKDYFGIRFVDPDKQRHWLEFTKSVVKQLRSQPPFTMCFRVKFYPADPA
                     ALKEEITRYLVFLQIKRDLYHGRLLCKTSDAALLAAYILQAEIGDYDPGKHPEGYSSK
                     FQFFPKHSEKLEKKIAEIHKTELSGQTPATSELNFLRKAQTLETYGVDPHPCKDVSGN
                     AAFLAFTPFGFVVLQGNKRVHFIKCILFASFTAAIHWAGGFKDFSTITPKPLSWNEVT
                     KLKFEGKTFYLYVSQKEEKKIILTYFAPTPEACKHLWKCGIENQAFYKLEKSSQVRTV
                     SSSNLFFKGSRFRYSGRVAKEVMESSAKIKREPPEIHRAGMVPSRSCPSITHGPRLSS
                     VPRTRRRAVHISIMEGLESLRDSAHSTPVRSSSHGDTFLPHVRSSRADSNERVAVIAD
                     EAYSPADSVLPTPVAEHSLELMLLSRQINGATCSIEEEKESETSTPTSTEAEALGGEL
                     RALCQGHGGSEQEQVNKFVLSVLRLLLVTVGLLFVLLLLLIILTESDLDVAFFRDIRQ
                     TPEFEQFHYQYFCPLRRWFACKIRSVVSLLIDT"
ORIGIN      
        1 agctcaaatg ttattccagg ttgtagacac cgatcttgtg aagtgtccgc acatggcccg
       61 gcccaggaca aacagcatcc ataccaacca ccgcccgcga aaggagcgag cgagggcttg
      121 gggcgctaag gggctggccc gactggggct cagtactgct gttttgtgat gattgcttcc
      181 tccacccgtt catcatcccc gttccttatc ctgattggct cttcctcctg ctaatcggtt
      241 ccgccgcgct gacctccatt ggccccctac ctaggccccg ccccatgagc tgggcacggg
      301 cagtggggcg cccgggagag aacccagctt gcttggggtt ttggggggag gcggtggtgg
      361 ctctgtggaa ggaagaagag tggggcggga ggaggcagcg gtggcgatcc ggccagggtg
      421 atggtgcagg tgctaagggc cggcgcggag ctgccgcgct gaggggcgac gggtccggag
      481 tccgcagcgc cgccgcgtcg ctcccgagga cgggcgagcg ggcgggaaga tgctgagcag
      541 gttgatgagc ggcagcagca ggagtctgga gcgagagtac agctgcactg tgcggctgct
      601 ggacgacagc gagtacacct gcaccatcca gagagatgcc aaaggccagt acctgtttga
      661 ccttctttgc caccacctga acctacttga gaaagactac tttgggattc gtttcgtgga
      721 cccagataag cagcggcatt ggttggagtt tacaaagtca gtggtgaagc agctaaggtc
      781 ccagcctcca ttcaccatgt gcttccgtgt caagttttac cctgcggacc ccgctgccct
      841 gaaagaggaa ataaccaggt acttagtctt cctgcagatc aaaagggatc tctaccacgg
      901 ccgtcttctc tgtaaaacat cagatgctgc cttgttagcg gcctatatcc ttcaagccga
      961 gattggggat tatgacccgg gaaagcaccc agaaggctac agctccaagt tccaattttt
     1021 cccgaaacat tcagagaaac tggaaaagaa aatcgccgag attcacaaga ccgaactcag
     1081 tggtcaaaca ccagcaacat ccgagctgaa tttcttaaga aaggcccaga cgttagagac
     1141 ctacggagtg gaccctcacc catgtaagga tgtgtcaggg aatgctgcat ttctggcctt
     1201 cactcctttc gggtttgttg ttcttcaagg aaacaagagg gttcacttca ttaaatgtat
     1261 cctgtttgcc tcttttactg cagccattca ctgggctggt ggcttcaagg atttttctac
     1321 aataacccct aagccccttt cctggaatga ggtgaccaag ctgaaatttg aaggaaagac
     1381 tttctattta tatgtaagtc agaaagagga aaaaaagatt atcctcacat attttgctcc
     1441 aactccagaa gcctgcaagc atctctggaa atgtgggatt gagaatcaag cattctacaa
     1501 gctggagaag tcaagccaag tccgcacagt gtccagcagc aatttattct ttaaagggag
     1561 ccggttccga tacagtggcc gggttgcaaa ggaagtaatg gagtcgagtg ccaagatcaa
     1621 acgggaacca ccagaaatac acagagcagg gatggtccct agccgcagct gtccctccat
     1681 aacccatggc ccacggctga gcagcgtccc caggacacga cgaagagctg tgcacatctc
     1741 tatcatggaa ggcctggagt ccctacgaga cagtgcccat tccacaccag tgcggtcctc
     1801 ttcccatggg gacaccttct tgcctcacgt gagaagcagc cgggcagaca gcaatgaacg
     1861 tgtagctgtg atagcagatg aggcctacag ccctgcagac agtgtgctgc ccacccctgt
     1921 agccgagcac agcctggagc tgatgctgct ctcccggcag atcaatggag ccacgtgtag
     1981 cattgaggag gagaaggagt cagagaccag cacccctact tccacagagg cggaggccct
     2041 gggaggagag ctgagggccc tgtgtcaggg gcacggcggg tcagagcaag aacaggtgaa
     2101 taagtttgtt ttaagtgtcc tccgtttgct ccttgtgacc gtgggactcc tctttgtttt
     2161 gctcctcctc ctgatcatcc ttactgagtc tgaccttgac gttgcttttt tccgagatat
     2221 ccgccagacc cctgagtttg aacaattcca ctatcaatac ttttgtcccc tcaggcgatg
     2281 gtttgcctgc aaaatccgct cagtggtgag cctgctcatt gacacctgag aaggcatgac
     2341 tcctcccaat aactagccag gtggaccaag gaacccggct ccccattccc agcaatggga
     2401 cccatcgcgg aaccatcggc acccacacca agtcctctca tgactcaaag tccactgcag
     2461 cctaggaggg ttgtttccca gaagaaaggg atataggcta atgctctgta aactgggaac
     2521 attcaatttc ttcagaggct cttccaaaaa atggctcagc aacgcaaatg tttctcatcc
     2581 ttcaatatgc aggataattt tggggtttga acgttaattt ttcatagatg tgtattattt
     2641 tgaaagtatc caaataaaag tcatttattt tactatactg attttgcagt agtgtcaccc
     2701 agtagatggg acactagctg aagactcgga ccgttgtcct ctgcaccctg cagttttctc
     2761 actggtgcca gtgggttccg ggagacccag caggagaggc cagagctaag gacaggcagg
     2821 actggcttcc ttgccagaca gaaaggctta acaaagtaaa ctgtgtggaa tggttaaata
     2881 gaaagttgct tcttgcgata gtctgagtcg gattttcttc tcttgttttt tcaaatctga
     2941 gcagagtggg cgtctgaagg gacttcctct acagcagcag cagcagcagg ggtgggtaag
     3001 tctgtgccct tagactagag cctagtggac agttgagttt tatttaatgg gtttaatgtt
     3061 ttttgttttt tgtttgtttt tttttcctga agaagctcaa gacttctagt gcttctgggt
     3121 gttaaagtgg tgccaggatg tgctgtcaga aacgtcccaa cggtgtagtt accaggtgct
     3181 gagcacccaa gagcctttgg agctgcggga gtgcccctcc ctcccaaaaa aaatactatt
     3241 tcaagctcta ttttaacagc aaaatgttat tttcctatct attcatattt tgtttttact
     3301 ttatgaatta aaagatgcaa gagagaaaca gatctgagga aggcatcggg aaggagcagc
     3361 agcattggaa gggaccagga aaactgagca gaatctctaa tcaatgccta aaggccacag
     3421 aatttgaccg tggcagagac caacacttac tgtggtcaac atctgctcct gcaaacaagg
     3481 tcaaggagca cttatcgatg ctcacagcag cataggaatg cacgcacgca catgcacaca
     3541 cacacgcaca cacacacaca cacacagaca aggacacgcg cacatacaca cgcacacact
     3601 aagatgagca gcagtcccca ggcctctaca cctcttacca ccgataacac aagagcttgt
     3661 tttcatctca gggagactgc taatcatctg aggcccgagg actcactcat ataaaggaca
     3721 gtcaaggggt atctccaggg accagagaac agtggagcag aacagcctca gatgcaggac
     3781 agactgggct gtagagtatc tgagctcttc ttattttgtt gcctggggta gaaccatgtc
     3841 cactttatta atatgacagc cattaagaac aacagtaacc aaaaacccca acaaagcaac
     3901 cacaaaaaca ccaaccacag ggttctgaag atgctgggag ggcgtttaca taatttcaag
     3961 gtggatgaca tccttatcta gaccagaggt caacaaactt cttttaataa aattttgact
     4021 ttgtggacca tgccctgcca ccctagctcg ctcctgaaaa tgcacgcatc attccgagaa
     4081 cacggcttgt tccacgaaca tgtgagaaaa gcctcaggct gaggatagct cagagggaaa
     4141 gtacttttag catgtctaag gccctggatc tgactgctaa caatacacaa agccaggtgt
     4201 ggtagcgtag acccgtggtc ccagaattca gcagagaggc ggcaggagga ttagaagttc
     4261 aaagtcatcc tcagtcacat aataagttaa ggccaccctg agatacacga gaggttgtct
     4321 cagatcacca gcctcccact tcccaaaaat acacctaaaa ctgcagtatg cggagagacc
     4381 ggtgcccacc tgtccacaaa ccgtaaccca cacagggcca gcttcgatcg ttgttttgtg
     4441 taagataccc agaagtgttt cctaatgggg gctttgcagg gtgctccaag agccagccag
     4501 cagtgatgtc atccaatacc aagatcaagt actgccactg tgaacagcag tgttgctaag
     4561 gatggatcca ggcctatcga tcatttccga tcgtttctgt accagcaaca atttgtatga
     4621 ggtctaaaac atttaccaca taacaagaca aacggagggg aatcctagta aagaccaggg
     4681 atcacttaaa gcaatgagcc actgccactt gtcaactgca tagcaaaggt ttacctagca
     4741 caggcctgat ggcaaaggct actgggaaac agggctggtg tgaacgggga attctattct
     4801 tatgcaacat agtagattgc cttctagtgt ggtgctccta cctcagtttg tagaacacag
     4861 catctatgca gtgagtggta gccttgcctc tgacctttca cagcctcgag agagaggcag
     4921 cctgccactg cctggtgtgt ttcttgtgtc tagagtccta acagtgctgc gatccgtgcg
     4981 atttccacca tctgacccgg aaccttcagg tcgtcccggc ccccaaggct cagcccagaa
     5041 aataaggaca gaaaaggctt ccttcgattt ggtttccaaa tggttttcaa tagttcagta
     5101 acaaaccccc tttagtggtg actagtgttt tttagtattt ttcccatcat aaaaaaagtt
     5161 tcagttttca gtctggtttt gctgtgttct atgtctcttc tttcctctca gaattagttg
     5221 atctcgctgt agaaaagcag atgtgcatag catcattgat cagaggaaat acctacagaa
     5281 tagtggactg cacctttaag cagtagagga taaactacct acaaatgtga atttcttagt
     5341 ttcatttaaa agtatacggc tgttaacctt tcgtgtgcca aatcttaagt tacatttttc
     5401 cttcaaagca atgtactttt ttctacatat gtagtgtgta gttagcataa atcattggtg
     5461 ccatgaagat tatttttaaa ttcaataaat atttaaatac cgtaaaa
//
