LOCUS       XM_039108767            5128 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FERM domain containing 4B (Frmd4b),
            transcript variant X5, mRNA.
ACCESSION   XM_039108767
VERSION     XM_039108767.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5128
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5128
                     /gene="Frmd4b"
                     /note="FERM domain containing 4B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 15 ESTs, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:252858"
                     /db_xref="RGD:620172"
     CDS             269..3307
                     /gene="Frmd4b"
                     /codon_start=1
                     /product="FERM domain-containing protein 4B isoform X5"
                     /protein_id="XP_038964695.1"
                     /db_xref="GeneID:252858"
                     /db_xref="RGD:620172"
                     /translation="MTEGRHCQVHLLDDRRLELLVQPKLLSRELLDLVASHFNLKEKE
                     YFGITFIDDTGQENWLQLDHRVLEHDLPKKPGPAVLHFAVRFYIESISFLKDKNTVEL
                     FFLNAKACVHKGQIEVDSETIFKLAALVLQESKGDYTSDENARKDLKTLPVFPTKTLQ
                     EHPSLAYCEDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYGVHYYAVKDKQGLPWWL
                     GISYKGIGQYDLQDKVKPRKLFQWKQLENLYFREKKFAVEVHDPRRISVSRRTFGQSG
                     LFVQTWYANSSLIKSIWVMAISQHQFYLDRKQSKAKIPSARSLDDIAMDLTETGTQRV
                     SKLVTLEAKSQFIMASNGSLISSGSQDSEGMEEQKREKILELKKKEKLLQEKLLKKVE
                     ELKKICLREAELTGRMPKEYPLNIGEKPPQVRRRVGTTFKLDDNLLPTEEDPALQELE
                     SNFLIQQKLVEAAKKLASEPDLCKTVKKKRKQDYTDAVKRLQEIENSINEYRIRCGKK
                     PSQKAAVVPPEDIIPSESSSLSDTTTYDDPNDSFTLAGQRPSSVPHSPRILPPKSLGI
                     ERIHFRKSSINEQFVDTRQSREMLSTHSSPYKTLERRPQGGRSMPTTPVLTRNAYSSS
                     HLEPDSSSQHCRQRSGSLESQSHLLSEMDSDKPFFTLSKSQRSSSTEILDDGSSYTSQ
                     SSSEYYCVTPAAGPYYTTQTLDTRARGRRRSKKHSVSTSNSGSMPNLAQKDTLRNGVY
                     SKGQDPPPSGYYIAGYPPYAECDLYYSGGYVYENDTEGQYSVNPSYQSSAHYGYDRQR
                     DYSRSFHEDEVDRVPHNPYATLRLPRKAAVKSEHITKNIHKAIVAEHLRGWYQRASGQ
                     KDQGHSPQTSFDSDRGSQRCLGFAGLQVPCSPSSRASSYSSVSSTNASGNWRTQLTTG
                     LSEYENPVHSPYTSYYGNIYNPLPSPNRHNHNRGPLWQRMAVAPEVRSVLSSVLFSVA
                     SRNSTQRALRWTVQTETSWKTAWRVVNRGSFGMKTPSPEH"
ORIGIN      
        1 gctgcggggg aaagcatcgc gcgccgtgga gttgcgggac tggcgcggag cgggttctcc
       61 gggtcccgcg cgctgcacag cgcagacaat aaagtagcaa ggcgacagcc ccgctcgctc
      121 gaggaaggag gaggctgagc aggagttgag gagaaaccca gaagacagaa tgtgggggag
      181 aaaaagatga cattggtaca ggtccgacag aacccaagga cccttcctgt gagaacagac
      241 tgagggcgag agaagccatt cgtccaagat gacagaaggc aggcactgcc aggttcacct
      301 gctggatgac agaagactgg agcttctggt tcagcccaag cttttatcca gagagctgct
      361 agacctcgtg gcgtcccact tcaacctgaa ggagaaggag tactttggaa taacgtttat
      421 agacgacacg ggtcaagaga actggctgca gctagaccac agagttctgg agcatgatct
      481 gccgaagaag ccaggcccag ccgtcctgca ctttgccgtc aggttctaca tcgagagcat
      541 atcctttcta aaggataaga acacagtgga gctgtttttt ctgaacgcaa aggcctgtgt
      601 acacaagggg caaattgaag tagacagcga gaccatcttc aagttggcag ccctggtttt
      661 gcaggaaagc aagggagatt ataccagcga tgagaatgcc aggaaagact tgaagacact
      721 gccagtcttc ccaaccaaaa ctcttcagga acatccgtcg cttgcgtact gtgaggacag
      781 agtgattgag cattatttga aaatcaaagg tctcactcgg ggtcaagctg tggtccagta
      841 tatgaaaata gtagaagccc taccaaccta tggagtccat tactatgcag tgaaggataa
      901 gcaaggactt ccatggtggc ttgggatcag ctacaaagga atcggccagt atgatttaca
      961 agacaaggtg aagcctcgga aattatttca gtggaagcag ctggaaaatt tgtatttccg
     1021 tgagaagaaa tttgctgtgg aggtgcacga cccccgaagg atttcagtgt ccagaagaac
     1081 ctttggacag agtggcctgt ttgtacaaac ctggtatgca aactcttccc tcatcaagtc
     1141 catctgggta atggccatta gccagcatca gttctacctg gaccggaagc agagcaaagc
     1201 aaaaattcct tcagccagaa gcttagatga catcgcgatg gatttaaccg agaccggaac
     1261 acagagggtc tccaaactgg tgactctgga agccaagagt cagttcatca tggccagcaa
     1321 tggcagcctg atatcctcag gttctcagga ctcggaaggc atggaggagc aaaagcggga
     1381 gaagattctc gaactcaaga agaaggaaaa actgctgcag gaaaagctct tgaagaaagt
     1441 cgaggagctg aagaagattt gcctgcgtga ggccgagctc acaggcagaa tgccaaagga
     1501 gtatccactg aacataggcg agaagccccc tcaggtcagg aggcgagtgg ggaccacgtt
     1561 caagttggat gacaacttac tgcctactga ggaggatcca gctttacaag aactggagag
     1621 caatttcctg atacagcaaa agctggtcga agctgcaaag aagcttgcca gtgagccaga
     1681 cctttgtaaa accgtgaaga aaaagcgaaa gcaagattac acagatgctg tgaaaagact
     1741 gcaggagatt gaaaattcca taaacgaata ccgaatccga tgtggcaaga agcccagtca
     1801 gaaagctgcc gttgtccctc cagaagacat cattccatcc gaaagtagct ctttgtccga
     1861 caccaccacc tatgatgatc ccaatgactc cttcactctt gctgggcagc gaccaagttc
     1921 agtacctcat tctccaagaa ttctaccccc caagtctctt ggtattgaga gaatccactt
     1981 cagaaaatcc tccatcaatg aacagttcgt ggacaccagg cagtccagag aaatgctgtc
     2041 cacccacagc agcccttaca agacactaga gaggcggccc cagggaggac ggagcatgcc
     2101 caccacgcca gtcctgactc ggaatgccta cagcagcagc cacctggaac ctgattcctc
     2161 gtctcaacac tgccgccaac ggagcggaag cctggagtcc cagtcccacc tgctctctga
     2221 gatggacagc gataagccat ttttcaccct ttccaaatcc caaagaagca gcagcacaga
     2281 gatccttgac gacgggtctt cgtacaccag ccagtcaagc tcagagtatt actgtgtgac
     2341 gcctgctgcc ggcccttact acaccaccca gaccttagac acccgtgcca gggggagaag
     2401 aaggtctaag aaacacagtg tttctacttc caattcggga agcatgccca acctagcaca
     2461 aaaggatacc ttgaggaacg gcgtctactc aaaaggtcag gacccacctc cttccggtta
     2521 ctatatcgcc ggatatccac cgtatgcgga gtgcgacctg tattacagtg gtggctacgt
     2581 ctacgagaat gacactgagg gacagtacag tgtcaatcct tcttaccaat cctcagctca
     2641 ctatggatac gaccgccaga gggactatag caggtctttc cacgaagacg aggtggaccg
     2701 agtgccccat aacccttatg caactctccg gctgccaagg aaggctgctg tgaaatctga
     2761 gcacatcacc aaaaacatcc acaaggccat agttgccgag caccttcgtg gctggtatca
     2821 gagggcttct ggacaaaagg atcaggggca tagcccacag actagctttg actcagacag
     2881 gggatcacag aggtgccttg gatttgcagg gctccaggtt ccctgttctc caagcagtcg
     2941 agcatcttcc tactcttcag tgtcttctac aaatgcttct gggaactgga ggacccagtt
     3001 aaccactggg ctctctgaat acgaaaatcc agtgcattct ccctacacca gctactatgg
     3061 caacatctac aatcccttgc cctctccaaa caggcacaat cacaatcgag gccctctgtg
     3121 gcagaggatg gctgtggctc cagaagtgag atcagtacta agctctgtct tgttcagtgt
     3181 agccagccgt aacagtacgc agagagcact ccgctggacg gtacagacgg aaaccagctg
     3241 gaagacagcc tggagagtag tgaacagagg ctcttttggc atgaagactc caagcccgga
     3301 acattagtct gaatgcagct ggacctcctg accaagcact gcgcgttctc acactagtgt
     3361 gccttgcaaa gtctgttcat cttctacaag aaggctttag aaactaaagg catgaaaggt
     3421 cgaagacaag acttaaatgt ggtttgaaag agaatcacac actaagcccc acaaagccct
     3481 ggatgaggac ttgccttcca cattgtaggc actgactcat cactaagtcg gatcccgttg
     3541 tgggactctt gtcaagaggg cctgcacaaa gccttgaccc acagcgagct cttatgaagg
     3601 ggataacatt tgccaaaggc aagccccgaa gctgggaaga tggtcacgga gtttgtccca
     3661 ttggagagga ggatgggaga tttcagacca cagttcagaa ttcggagaga gggaacccag
     3721 aagctcctga atcatgactc accttcacaa ggtttgaact cacgagctga cagaaaacac
     3781 cctgttacca caaaccgatg aggacaattt agacagtatt ggaaacttac ttgaagagaa
     3841 gttagatttt catgaagttc tgaatgagtg taaatgtttt aggctattgc aaaaatgacg
     3901 tttttcataa gcaccctagt atggattcta gccttctgat tgctgtagca tcccgtacta
     3961 taacttaaag gtagccaact agaggaaatg aagtaactgg ccagttctgc ttggagaacg
     4021 ttctaaaggt acatgccacc agtccctgct gtgcttccca acaccgctca gactggtgac
     4081 ctttgcctgt catctgaatg gtgggctcga ggtggcaagc ttatctgaaa aagtgtttgg
     4141 agatgctaac agaaaggacc ccaaaaggac aaagccaacc cacatcaccg tagatgaatc
     4201 gtgtgcctta cagtggtgag ccgtagaaaa tgaagcctac gatctgaact ccagaagtaa
     4261 atccgagtca cagagtgacg agccgagatt ggcaggaaag aatttactcc aagctgcagg
     4321 agattgaatt atgaggatta aactacctca taccccccgg aggaagtcgt ttgtgtaggt
     4381 tagctgttca caggaccttg cctgcctcta gagcagcctt gttctttgtg tctttttttt
     4441 tttttttttt tttttttttt ggcttcagag tcccacaaaa ggtgctccct tcccctccct
     4501 tttatacaag tttcttgttc atattgtgaa tagagacatt tctcaacaag ttttctggaa
     4561 catttttcta cttgtattcc aaagcatgta atatatacat aaaaaatgat ttgataactg
     4621 ctactctgtc atttgtatca ttagaaatga agtttgggga aaattttttt ggaaaaaaag
     4681 aagacacaag ttaaaaaaaa taacttattc ctttttgcat atttgtatag cctcccgaaa
     4741 ttggaaatcg ccttttgcat attctttcac tgttttgact ttttgagacc tattaatttt
     4801 tttttatgta gggcaataaa cttatggtgt gctattgaca catgtccgag ttcttgtctt
     4861 tatgtttggg atccacaaga ggccgtgtgg atccatctca agggcgttgg gcacacaaat
     4921 acatttaata ttacaaggtt ttgttgattt caagatacac acttttcatc attcaatcag
     4981 aaaataaggt tcatatattc atcatgtctt attggaattg tccatggttt gggttgctgt
     5041 gaatttggct gatgttttgt ttgtttgttt gtttgttttg tttgttttct tattcataca
     5101 taaaatattg ttttgttctg ttgtttca
//
