LOCUS       XM_039108764            5585 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FERM domain containing 4B (Frmd4b),
            transcript variant X1, mRNA.
ACCESSION   XM_039108764
VERSION     XM_039108764.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5585
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5585
                     /gene="Frmd4b"
                     /note="FERM domain containing 4B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 15 ESTs, 8 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:252858"
                     /db_xref="RGD:620172"
     CDS             564..3764
                     /gene="Frmd4b"
                     /codon_start=1
                     /product="FERM domain-containing protein 4B isoform X1"
                     /protein_id="XP_038964692.1"
                     /db_xref="GeneID:252858"
                     /db_xref="RGD:620172"
                     /translation="MASVFMCGVEDLLFSGSRFVWNLTVSTLRRWYTERLRACHQVLR
                     TWCGLRDVYQMTEGRHCQVHLLDDRRLELLVQPKLLSRELLDLVASHFNLKEKEYFGI
                     TFIDDTGQENWLQLDHRVLEHDLPKKPGPAVLHFAVRFYIESISFLKDKNTVELFFLN
                     AKACVHKGQIEVDSETIFKLAALVLQESKGDYTSDENARKDLKTLPVFPTKTLQEHPS
                     LAYCEDRVIEHYLKIKGLTRGQAVVQYMKIVEALPTYGVHYYAVKDKQGLPWWLGISY
                     KGIGQYDLQDKVKPRKLFQWKQLENLYFREKKFAVEVHDPRRISVSRRTFGQSGLFVQ
                     TWYANSSLIKSIWVMAISQHQFYLDRKQSKAKIPSARSLDDIAMDLTETGTQRVSKLV
                     TLEAKSQFIMASNGSLISSGSQDSEGMEEQKREKILELKKKEKLLQEKLLKKVEELKK
                     ICLREAELTGRMPKEYPLNIGEKPPQVRRRVGTTFKLDDNLLPTEEDPALQELESNFL
                     IQQKLVEAAKKLASEPDLCKTVKKKRKQDYTDAVKRLQEIENSINEYRIRCGKKPSQK
                     AAVVPPEDIIPSESSSLSDTTTYDDPNDSFTLAGQRPSSVPHSPRILPPKSLGIERIH
                     FRKSSINEQFVDTRQSREMLSTHSSPYKTLERRPQGGRSMPTTPVLTRNAYSSSHLEP
                     DSSSQHCRQRSGSLESQSHLLSEMDSDKPFFTLSKSQRSSSTEILDDGSSYTSQSSSE
                     YYCVTPAAGPYYTTQTLDTRARGRRRSKKHSVSTSNSGSMPNLAQKDTLRNGVYSKGQ
                     DPPPSGYYIAGYPPYAECDLYYSGGYVYENDTEGQYSVNPSYQSSAHYGYDRQRDYSR
                     SFHEDEVDRVPHNPYATLRLPRKAAVKSEHITKNIHKAIVAEHLRGWYQRASGQKDQG
                     HSPQTSFDSDRGSQRCLGFAGLQVPCSPSSRASSYSSVSSTNASGNWRTQLTTGLSEY
                     ENPVHSPYTSYYGNIYNPLPSPNRHNHNRGPLWQRMAVAPEVRSVLSSVLFSVASRNS
                     TQRALRWTVQTETSWKTAWRVVNRGSFGMKTPSPEH"
ORIGIN      
        1 attttttttt cttccccttc tgcttctata gcttccccag aggtgtttat cactgaggcg
       61 tggacagagc aagatgcaag gcagagagac cttaaagagt aaaatataag ggtcccggta
      121 ctgggtctag gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
      181 gcaagtgcgc tgaaatgaag ctgcccacta ggtttgcaaa gagttgctgg gctttgcctg
      241 cagccctgtg ccctggagca gcgcagcggg gagtcctcac cggccagggc ttcccgcgcc
      301 cagggagcac ccagggctgg cctgacggag cttaggaagc tggcgctggg gggcgggcgg
      361 ggtgacacag cctccgtgcc agccgcagcc gttggctggc gggcacccaa tcccggggca
      421 tgccgcccca acctggccgg gacacacagt gaaaggcgag ttcagtggca gatctgaccc
      481 cccccccccc ctgggggctg tcagctacag cagcgtggcg tgcccagtat cgcggatccc
      541 aggctccgag ggaaagcagc ggcatggctt cggtgttcat gtgcggagtg gaggacctgc
      601 tgttcagcgg cagccgcttc gtgtggaact tgaccgtgtc cacgctgcgg agatggtaca
      661 ccgagaggct gcgggcttgc caccaggtgc tgaggacgtg gtgcgggctg cgggatgtgt
      721 accagatgac agaaggcagg cactgccagg ttcacctgct ggatgacaga agactggagc
      781 ttctggttca gcccaagctt ttatccagag agctgctaga cctcgtggcg tcccacttca
      841 acctgaagga gaaggagtac tttggaataa cgtttataga cgacacgggt caagagaact
      901 ggctgcagct agaccacaga gttctggagc atgatctgcc gaagaagcca ggcccagccg
      961 tcctgcactt tgccgtcagg ttctacatcg agagcatatc ctttctaaag gataagaaca
     1021 cagtggagct gttttttctg aacgcaaagg cctgtgtaca caaggggcaa attgaagtag
     1081 acagcgagac catcttcaag ttggcagccc tggttttgca ggaaagcaag ggagattata
     1141 ccagcgatga gaatgccagg aaagacttga agacactgcc agtcttccca accaaaactc
     1201 ttcaggaaca tccgtcgctt gcgtactgtg aggacagagt gattgagcat tatttgaaaa
     1261 tcaaaggtct cactcggggt caagctgtgg tccagtatat gaaaatagta gaagccctac
     1321 caacctatgg agtccattac tatgcagtga aggataagca aggacttcca tggtggcttg
     1381 ggatcagcta caaaggaatc ggccagtatg atttacaaga caaggtgaag cctcggaaat
     1441 tatttcagtg gaagcagctg gaaaatttgt atttccgtga gaagaaattt gctgtggagg
     1501 tgcacgaccc ccgaaggatt tcagtgtcca gaagaacctt tggacagagt ggcctgtttg
     1561 tacaaacctg gtatgcaaac tcttccctca tcaagtccat ctgggtaatg gccattagcc
     1621 agcatcagtt ctacctggac cggaagcaga gcaaagcaaa aattccttca gccagaagct
     1681 tagatgacat cgcgatggat ttaaccgaga ccggaacaca gagggtctcc aaactggtga
     1741 ctctggaagc caagagtcag ttcatcatgg ccagcaatgg cagcctgata tcctcaggtt
     1801 ctcaggactc ggaaggcatg gaggagcaaa agcgggagaa gattctcgaa ctcaagaaga
     1861 aggaaaaact gctgcaggaa aagctcttga agaaagtcga ggagctgaag aagatttgcc
     1921 tgcgtgaggc cgagctcaca ggcagaatgc caaaggagta tccactgaac ataggcgaga
     1981 agccccctca ggtcaggagg cgagtgggga ccacgttcaa gttggatgac aacttactgc
     2041 ctactgagga ggatccagct ttacaagaac tggagagcaa tttcctgata cagcaaaagc
     2101 tggtcgaagc tgcaaagaag cttgccagtg agccagacct ttgtaaaacc gtgaagaaaa
     2161 agcgaaagca agattacaca gatgctgtga aaagactgca ggagattgaa aattccataa
     2221 acgaataccg aatccgatgt ggcaagaagc ccagtcagaa agctgccgtt gtccctccag
     2281 aagacatcat tccatccgaa agtagctctt tgtccgacac caccacctat gatgatccca
     2341 atgactcctt cactcttgct gggcagcgac caagttcagt acctcattct ccaagaattc
     2401 taccccccaa gtctcttggt attgagagaa tccacttcag aaaatcctcc atcaatgaac
     2461 agttcgtgga caccaggcag tccagagaaa tgctgtccac ccacagcagc ccttacaaga
     2521 cactagagag gcggccccag ggaggacgga gcatgcccac cacgccagtc ctgactcgga
     2581 atgcctacag cagcagccac ctggaacctg attcctcgtc tcaacactgc cgccaacgga
     2641 gcggaagcct ggagtcccag tcccacctgc tctctgagat ggacagcgat aagccatttt
     2701 tcaccctttc caaatcccaa agaagcagca gcacagagat ccttgacgac gggtcttcgt
     2761 acaccagcca gtcaagctca gagtattact gtgtgacgcc tgctgccggc ccttactaca
     2821 ccacccagac cttagacacc cgtgccaggg ggagaagaag gtctaagaaa cacagtgttt
     2881 ctacttccaa ttcgggaagc atgcccaacc tagcacaaaa ggataccttg aggaacggcg
     2941 tctactcaaa aggtcaggac ccacctcctt ccggttacta tatcgccgga tatccaccgt
     3001 atgcggagtg cgacctgtat tacagtggtg gctacgtcta cgagaatgac actgagggac
     3061 agtacagtgt caatccttct taccaatcct cagctcacta tggatacgac cgccagaggg
     3121 actatagcag gtctttccac gaagacgagg tggaccgagt gccccataac ccttatgcaa
     3181 ctctccggct gccaaggaag gctgctgtga aatctgagca catcaccaaa aacatccaca
     3241 aggccatagt tgccgagcac cttcgtggct ggtatcagag ggcttctgga caaaaggatc
     3301 aggggcatag cccacagact agctttgact cagacagggg atcacagagg tgccttggat
     3361 ttgcagggct ccaggttccc tgttctccaa gcagtcgagc atcttcctac tcttcagtgt
     3421 cttctacaaa tgcttctggg aactggagga cccagttaac cactgggctc tctgaatacg
     3481 aaaatccagt gcattctccc tacaccagct actatggcaa catctacaat cccttgccct
     3541 ctccaaacag gcacaatcac aatcgaggcc ctctgtggca gaggatggct gtggctccag
     3601 aagtgagatc agtactaagc tctgtcttgt tcagtgtagc cagccgtaac agtacgcaga
     3661 gagcactccg ctggacggta cagacggaaa ccagctggaa gacagcctgg agagtagtga
     3721 acagaggctc ttttggcatg aagactccaa gcccggaaca ttagtctgaa tgcagctgga
     3781 cctcctgacc aagcactgcg cgttctcaca ctagtgtgcc ttgcaaagtc tgttcatctt
     3841 ctacaagaag gctttagaaa ctaaaggcat gaaaggtcga agacaagact taaatgtggt
     3901 ttgaaagaga atcacacact aagccccaca aagccctgga tgaggacttg ccttccacat
     3961 tgtaggcact gactcatcac taagtcggat cccgttgtgg gactcttgtc aagagggcct
     4021 gcacaaagcc ttgacccaca gcgagctctt atgaagggga taacatttgc caaaggcaag
     4081 ccccgaagct gggaagatgg tcacggagtt tgtcccattg gagaggagga tgggagattt
     4141 cagaccacag ttcagaattc ggagagaggg aacccagaag ctcctgaatc atgactcacc
     4201 ttcacaaggt ttgaactcac gagctgacag aaaacaccct gttaccacaa accgatgagg
     4261 acaatttaga cagtattgga aacttacttg aagagaagtt agattttcat gaagttctga
     4321 atgagtgtaa atgttttagg ctattgcaaa aatgacgttt ttcataagca ccctagtatg
     4381 gattctagcc ttctgattgc tgtagcatcc cgtactataa cttaaaggta gccaactaga
     4441 ggaaatgaag taactggcca gttctgcttg gagaacgttc taaaggtaca tgccaccagt
     4501 ccctgctgtg cttcccaaca ccgctcagac tggtgacctt tgcctgtcat ctgaatggtg
     4561 ggctcgaggt ggcaagctta tctgaaaaag tgtttggaga tgctaacaga aaggacccca
     4621 aaaggacaaa gccaacccac atcaccgtag atgaatcgtg tgccttacag tggtgagccg
     4681 tagaaaatga agcctacgat ctgaactcca gaagtaaatc cgagtcacag agtgacgagc
     4741 cgagattggc aggaaagaat ttactccaag ctgcaggaga ttgaattatg aggattaaac
     4801 tacctcatac cccccggagg aagtcgtttg tgtaggttag ctgttcacag gaccttgcct
     4861 gcctctagag cagccttgtt ctttgtgtct tttttttttt tttttttttt tttttttggc
     4921 ttcagagtcc cacaaaaggt gctcccttcc cctccctttt atacaagttt cttgttcata
     4981 ttgtgaatag agacatttct caacaagttt tctggaacat ttttctactt gtattccaaa
     5041 gcatgtaata tatacataaa aaatgatttg ataactgcta ctctgtcatt tgtatcatta
     5101 gaaatgaagt ttggggaaaa tttttttgga aaaaaagaag acacaagtta aaaaaaataa
     5161 cttattcctt tttgcatatt tgtatagcct cccgaaattg gaaatcgcct tttgcatatt
     5221 ctttcactgt tttgactttt tgagacctat taattttttt ttatgtaggg caataaactt
     5281 atggtgtgct attgacacat gtccgagttc ttgtctttat gtttgggatc cacaagaggc
     5341 cgtgtggatc catctcaagg gcgttgggca cacaaataca tttaatatta caaggttttg
     5401 ttgatttcaa gatacacact tttcatcatt caatcagaaa ataaggttca tatattcatc
     5461 atgtcttatt ggaattgtcc atggtttggg ttgctgtgaa tttggctgat gttttgtttg
     5521 tttgtttgtt tgttttgttt gttttcttat tcatacataa aatattgttt tgttctgttg
     5581 tttca
//
