LOCUS       NM_001415819            7556 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus FERM domain containing 3 (Frmd3), transcript
            variant 1, mRNA.
ACCESSION   NM_001415819 XM_039109492
VERSION     NM_001415819.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7556)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000162.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001415819.2.
            
            On Jan 3, 2023 this sequence version replaced XM_039109492.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-314               JACYVU010000162.1  2314054-2314367
            315-419             JACYVU010000162.1  2360539-2360643
            420-462             JACYVU010000162.1  2394704-2394746
            463-541             JACYVU010000162.1  2454116-2454194
            542-639             JACYVU010000162.1  2459487-2459584
            640-763             JACYVU010000162.1  2468466-2468589
            764-851             JACYVU010000162.1  2484939-2485026
            852-940             JACYVU010000162.1  2496527-2496615
            941-1004            JACYVU010000162.1  2502096-2502159
            1005-1093           JACYVU010000162.1  2503242-2503330
            1094-1168           JACYVU010000162.1  2518646-2518720
            1169-1237           JACYVU010000162.1  2518996-2519064
            1238-1362           JACYVU010000162.1  2534158-2534282
            1363-7556           JACYVU010000162.1  2557233-2563426
FEATURES             Location/Qualifiers
     source          1..7556
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q31"
     gene            1..7556
                     /gene="Frmd3"
                     /note="FERM domain containing 3"
                     /db_xref="GeneID:298141"
                     /db_xref="RGD:1304802"
     exon            1..314
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..1955
                     /gene="Frmd3"
                     /note="isoform 1 is encoded by transcript variant 1; FERM
                     domain-containing protein 3"
                     /codon_start=1
                     /product="FERM domain-containing protein 3 isoform 1"
                     /protein_id="NP_001402748.1"
                     /db_xref="GeneID:298141"
                     /db_xref="RGD:1304802"
                     /translation="MFASCHCAPRGRRTMKMIHFRSSSIKSLNQEMKCTIRLLDDSEV
                     SCRIQRETKGQFLIEYICNYYSLLEKDYFGIRYVDPEKQRHWLEPNKSIFKQMKSHPP
                     YTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCSFTDAAYLGACIVQAEF
                     GDYYPDEHPENYISEFEIFPKQSQKLERKIMEIHNNELRGQSPAMAEFNLLLKAHTLE
                     TYGVDPHPCKDSRGATAFLGFTAAGFVVFQGNKRIHLRKWSDVCKLKFEGKTFYVIGS
                     QKEKNAVLAFHTSTPAACKHLWKCGVENQAFYKYAKSSQIKTVSSSKIFFKGSRFRYS
                     GKVAKEVVEASSKIQRDPPEVHRVNITQSRSFHSLNKQLIINMEPLQPLLPSPTEQEE
                     EVPMGEGTPLPKMDVSESLISSSPVKGAQCADPPDEEEDRLKEDPLTISELAYNPSAS
                     LLPTPVDDDEINMLFDCPSRLELEREDTDSFEELEADENAFLIAEEEELKEARQALSW
                     SYSILTGRIWVNPLVKSFSRLLVVGLGLLLFVFPLLLLLLESGIDLSFLCEIRQTPEF
                     EQFHYEYYCPLKEWVAGKVNIFLYMLGCS"
     exon            315..419
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            420..462
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            463..541
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            542..639
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            640..763
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            764..851
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            852..940
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1004
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1093
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1168
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1169..1237
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1362
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
     exon            1363..7556
                     /gene="Frmd3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcctcgcca ctcgccgctg gtggccgcag gcgccctgcg ctgccgccgt ctccgggccg
       61 agctgcaccc ggagccgcga ctgtattgag aacgtgtgaa tgtccgcgtg gaccagggcc
      121 gcgcgggccc cgcgcctcct ccggctggct cccgcgttct gctgtgtatg ttcgcttctt
      181 gtcactgtgc gccgagaggc agaaggacta tgaaaatgat tcactttcgg agctccagta
      241 tcaaatcgct caaccaggag atgaaatgca ccattcgact gctggacgac tcggaggtct
      301 cctgccgtat ccagagggaa accaaagggc agtttctcat tgaatacatc tgcaactact
      361 atagtttgtt ggagaaggac tactttggaa ttcgctatgt ggacccagag aagcaaaggc
      421 actggcttga gcctaacaag tccatcttca agcaaatgaa atctcatcca ccatacacca
      481 tgtgctttag agtgaaattc tacccacatg aacccttgaa gattaaagaa gagctcacaa
      541 ggtacctttt atatttgcaa attaaaagag atatttttca tggtcgactg ctctgttcct
      601 ttactgatgc tgcctatctg ggtgcttgta tcgttcaagc tgagtttggt gattactatc
      661 ctgatgagca tcctgagaat tatatcagtg aatttgagat ttttcccaag cagtcacaga
      721 agttagagag aaaaatcatg gaaattcata acaatgaact cagaggtcaa agcccagcaa
      781 tggctgaatt caacttactc ttgaaagctc atacattgga aacttatggt gtggatcctc
      841 acccatgcaa ggattcaaga ggtgctacag catttttagg attcactgct gcgggttttg
      901 ttgtattcca gggaaataaa agaattcatt tgagaaaatg gtcagatgtc tgcaaattga
      961 agtttgaagg gaagacattt tacgtgattg gctcccagaa agagaaaaac gctgttttgg
     1021 cattccatac ttcaacacca gctgcctgca aacatttatg gaaatgtggg gtagaaaacc
     1081 aagcctttta taagtatgca aagtccagtc aaatcaagac tgtgtcaagc agcaagatat
     1141 tttttaaagg aagtagattt cgatacagtg gtaaagttgc taaagaggtg gtagaggcaa
     1201 gctccaaaat ccagagggat cctcctgagg tgcacagagt caacattact cagagtcgca
     1261 gctttcactc cctgaacaaa cagctcatca tcaacatgga acctttgcaa cccctgcttc
     1321 cttcccccac tgaacaggaa gaagaagttc ctatgggtga aggtaccccc ttgcctaaaa
     1381 tggatgtgtc tgagtcccta atttccagtt caccagtaaa gggagctcag tgtgcagatc
     1441 ctccagatga agaggaagat agactgaaag aagacccctt gaccatctct gaactagcat
     1501 acaatcccag cgccagcctg ctccctaccc cagtggatga tgatgaaatc aacatgctct
     1561 ttgactgtcc atccaggctc gagttagaaa gagaagacac ggattcattt gaggaactcg
     1621 aagcagatga aaatgctttt ctgattgctg aagaggagga gctgaaggaa gctcgccaag
     1681 ctttgtcatg gagctattcc atcctgaccg gccgtatctg ggtcaatccc ctggtcaaga
     1741 gtttttccag gctccttgtg gtgggcctgg gactgctgct gtttgtattt cccctgctcc
     1801 tcctcctttt ggagtcaggt attgatctct ccttcttatg cgaaatccgt cagacaccag
     1861 agtttgagca gtttcactat gaatactatt gtcccctgaa ggagtgggtg gctgggaagg
     1921 tcaatatctt cctctacatg ctgggttgtt cataaaattc atatctgata agatgaaggg
     1981 ctatctaaaa tactagtcat atcattttca gtaaatgcta ggttttgaat ggccttgact
     2041 tgtcaagagg tagtcttaac tcttgacttt ttactctctt aactgctcaa accttgaaat
     2101 aagttttctg tacttcatta cttcattgag tttaaatcaa tcaaaatcaa atacaattct
     2161 ttgagttatc cttcagaaag gcagtcatga agtaaaaaaa aatctttctt tatcatacca
     2221 taaaaattta atatattgga ttagtttttc ctctttcttt attgtaaact ataatcaaaa
     2281 tcagaatttt agtaaaaata caagggaaat ctttttaata taacctttgg ggaaaataac
     2341 gttctcttac tgttgcctat acatataagt tgatgctgag tttttctttc ggttttttaa
     2401 aaaaaaaatt atttttacgc cttctaacta ttttggtaaa tttttagcaa acaaaatgaa
     2461 gctttctgga attatttaag tatagctact gtaaaactaa tgcacatgga attttttaat
     2521 gttttggcac ctgatttttt taaagatact ttttggctaa ctaatccata atttaatacc
     2581 tgtatatgac tttgcaaaaa tgatagtaaa aaaactatag aaagttctca caacagatga
     2641 ttgaactaca agatgtgagc ataaagaaca ttgagttgac attgtgcggt ctagtttcaa
     2701 agttttggat atgataacct tataatttca ttagtatttt tagtttatcc atatatttgg
     2761 actggggaag cagagtgttc ttaaaagaaa ttaaaactga ttgtaatagt aaaattgtga
     2821 aaaagatcaa ctagttaatt gttattgttt actaatcaga gcaaaagcaa gcaggagttt
     2881 ggcaaataga aggtagcaag agcacgtact tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2941 tgtgtgtgtg cgcgcatcat gtgtgtatgt gtgcattatg aatgtgtgca ggtgggtgta
     3001 agtcagaatg tttgtgagag agatagaaag acagaaaaac agaaatggag agagagagac
     3061 aaagaatgat gatagagaga gagagactat ttcttttatg gattttttta agttctgaac
     3121 tcttatgtaa ttgagtcttt tactgaaaca atgaatcatc agataataaa caaattctgt
     3181 ttaggtaaaa tcgacaatga aaaataaaaa gagacaaaag aaatgataaa tcctgaggta
     3241 tattcgttca tgtcagtgaa tccaagacag aaaaatgtct ggttattttc cttgctggcc
     3301 acttaccaat actgcattat aagtaagaaa caaaggagtt tgaatggagt ttacaacatg
     3361 gtttttccta tgatgaaaac atctaattgc ctttggttat aaacagattg gccacacaag
     3421 ttgagcacta cagtcatatt tactgaacac ggctctgaga gttttattag acattatttt
     3481 ggaaagtaaa ctttgaatgc tgacccttgg gactatgagt tgaaggcata ataatatata
     3541 cttgatattg cattcaggat ttacagtact tagaaaggaa agcacttact ttggaagttt
     3601 gctactgatc aacaatttga ttgatatttt aagtttgaac tttgaggtca taccctctgg
     3661 catgggtgta ctcaaatgca gttgattgaa atttgctcat ccttttaatt gtccttcata
     3721 ttttctttta agtactgata actcatctat cttcatcttt taaaaataat gtttacgatc
     3781 agtaatattt ttaaattatg gacatagcaa gcatatttat attgtaaagt ataaaatgaa
     3841 aataagagat ataacatgta attcgtgcat gcagatttgt aatgaagagc aagatgcaga
     3901 tagctttagc atttatatct tgcgtcaccc ttctcttgag gagcaattca ttgtaaagtc
     3961 aaaatacttt tagggaaaga gagaatagag actgttaaat taaaagaata accataacgt
     4021 ataacactga agtcttttta acaattttag attgttttta tttgtttttg tttattttat
     4081 ctatttattt tctcagtaag tgctgtattg catggtcaac tgtctctcag aaaagggtat
     4141 tagatccctt tatagatggc cttgaaccac tatgtgggca ctgggaattg aactcaggac
     4201 ctctggaata acagctggta ctcttaacca ttgaaccatc tctccagcct cacaaattta
     4261 tattttaaaa actagcagtt tggcaaaaaa aaaatggttg aagttattat agacaagaag
     4321 ggcatgcttg tgaagaaatt agggccatta taaaagtaac caatggggtt ggggatttag
     4381 ctcagtggta gagcgcttgc ctaggaagcg caaggccctg ggttcggtcc ccagctccga
     4441 aaaaaagaac caaaaaaaaa aaaaaagtaa ccaatgaatt tgcattcagg caataaaaat
     4501 gataccttga gggcacctta agtatcacac attagggccc acatagagca ggatcctggg
     4561 tatcaaacag aaaaggtact gagcagagat atctggtgga ccctgctttt ctcaaggttt
     4621 agtcacccaa gcactcagag gaaactccag tcaaggtcca aaagaagatt ggcagactat
     4681 catatcatcc atataatgct tgtttttgcc agcaaacaaa attcgtaaga taggttatgg
     4741 agaattatac ctctatgtca gagaaacgtc tggagttcag gcagcaagtg acagagtcag
     4801 gatcacacag gtaatcccca aaagaagatg aatatgaagc cttagctgaa atggagcctt
     4861 ggttctcact aaactcacac acccttattt ccttaaggca gggtctttca ctgaaccttg
     4921 agctaagtta caaaacacca aactattttc ctaagcaccc ccagcactgt ggttacagat
     4981 gtgcagccac acctagtttt ctccaatggc actggagatt tgaactcagt tcctcatgct
     5041 tatgtagcca ctaagccttc tcagccccta acaaaaattt ctcagtgaag ttctttttat
     5101 ctttcctctg gtgtttttaa atggtggcat catatggaaa ctatttcata attcaaagtc
     5161 acaaatactt gtttctataa cttttgtaag agttttatta tcatcctcta acaattcaac
     5221 ttatggttgt ggtgacaggg tctactgtga cttagttttt ctcagagctg attaaacaaa
     5281 gtcctctact gaagatggag aaggagaaga ggtgtgatgt actgaggaga ggagaggaga
     5341 tgagaagagg aaagtggggg gttttaggag gatggaaata gaatggatca gagaaattgt
     5401 gcgtaacttg tctatgaact gtatcaaagt ctggacataa tcccaaatca taagctttaa
     5461 aaggagatcg gtgagaatag ttatggtccc cacacttcag gtgatttgcc tgatagcagt
     5521 gtgagacaag cattgggcag gttccctcag gactagttat ttgtctatga aataaactat
     5581 gaaacaaaga aaataaggat aacattcttg ggaagaccta gaaactacag catgagaaga
     5641 gtaactgtct atagaaggat aaacttaggt cctactgggt ctgagatggt tagtagtgaa
     5701 aatagtgttt attgcttcct gtggtggcct caaggtggag agggaggcca acagtgggtg
     5761 agggtgcttg ctccacacac atgagggctt gaacttgaat cttcagcacc catgaaaaca
     5821 caaagcatga ctataagccc tggtaaccat aggggaatgg agataggcag ctctcagtga
     5881 ggcccaggtg agttagccta actgaaacac tagcattttg gttcagggag agaccgtatc
     5941 aagaccatat ccaatgtcct gctctggttc tgtatgcata tgcaacactc acatgcacca
     6001 cccacataca tcatgcacac accacacaca tttaaaaaaa gtgaagaaag acaaagctgt
     6061 agctggtgga tggggaacaa gagagtaaac aggttaacag ctctattcac tgagaatgta
     6121 gaagcaaata tttagctgta acaagagtgt tccagtattt cactcttggc tctccaaaca
     6181 ttattgcctg caaaaacgct cctagacacc ctcacccact ttgttttttc tttctttttt
     6241 cctttttttt gccatgcttt ttataaaaga aaagtttact gattgatagt tttgagatgg
     6301 gatatggctt ttctaactca gtgctcagat ctgagaggcc tcccatcttt aagattttcc
     6361 tgaaaggtct agttaacctt ctaagggaca gctatcaaag atagttaaag tggctgaatt
     6421 cgtaagtgat aagcatgcac tatgtttgta acagggcaga ttcaggatct cccaaaagaa
     6481 gacaggaaag aaaggaaggt gggaataaga cacaaaagga ggaaaaaatc aagagctaaa
     6541 agagcaagtt tgttcactgg tgaatgtaac tagctcactg ggttttattt tgttccttgg
     6601 gaaatgtcgc ggagcaactt attggttact tctgcatttt gtgaccaacg aacccaacat
     6661 aaacaattta aggggagagg acagacccta cctggatttt tcttttcaga ggtggaacag
     6721 agaagcattt tccttgatct actgcatact tttcacgata ttcaggttga cagaaagatc
     6781 aacgatcact ggtccttttg tgagtttgac atccaaatgt aacactggga tctgataatg
     6841 ccatttattc actataaaat tataaccatt tagtatccat ttttattaga aaacttcatc
     6901 agttgtttga atcaaatgaa gaggggattt gtcaacacat agtatataaa atagtgagat
     6961 tgtggtttca aagcaagtac ataagtatgt gaatattcca tgttattgat atatgtatat
     7021 ttataaaaga tatgtatgtg tgtgtttgta tagatacagg ccacatatct ttcatacata
     7081 cttacttgta tttattttgc cccaggtaaa gaatttgtgg aaccctactg ttcttttctc
     7141 tctcagatat catgaaattt agactctcaa gtgattattt tatgaaagtg ttttgtgtac
     7201 atttgtggac aaaagggggg ggggggagca caaatgcaca cacacttgtc tttagtgcta
     7261 atatgagctt tataatgagg atgatatagg taaaggatca tatatttctg agtttggaac
     7321 ataatgtttg ttatgtattt atagtatatt tcatagtttg tctaatattt atgaacataa
     7381 ctctgagaga atttacaatg agttaatttc tttgaaatat caagagatat aggggccgta
     7441 ttatggttat tggagctgta tctttgtata gtaaaattag tatttctctg tcaacaccca
     7501 gattgtttat ctgttgatat ggtagcagga atctctaata aaatactctg ggcaaa
//
