LOCUS       XM_039094828             880 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FSHD region gene 1 (Frg1), transcript
            variant X2, mRNA.
ACCESSION   XM_039094828
VERSION     XM_039094828.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094828.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..880
                     /gene="Frg1"
                     /note="FSHD region gene 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 88 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
     CDS             194..781
                     /gene="Frg1"
                     /codon_start=1
                     /product="protein FRG1 isoform X2"
                     /protein_id="XP_038950756.1"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
                     /translation="MDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRI
                     ALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDI
                     EAKNKTAGEEEMIKIRSCAEREAKKKDDIAEEDKGSVQQCEINYVKKFQSFQDHKLKI
                     SKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK"
ORIGIN      
        1 gacccacctg cctctgcctc ccaagtgaag acttgctggg attgaagaga aggctaggaa
       61 tttatttaaa aagaaaaaga gcaaagataa gaagagaaaa cgagaagaag acgaggaagc
      121 gcaacttgac attgtgggaa tctggtggac tgtatccaat tttggtgaga tttcaggaac
      181 cattgccatt gaaatggata aaggagccta tatccatgca ctggacaatg gcctctttac
      241 actgggagcg ccacacagag aagtcgatga gggccccagt cctccagagc agtttactgc
      301 tgttaaattg tctgattcca gaattgccct gaagtctggc tatggaaaat atctcggtat
      361 aaattcagat ggacttgttg ttgggcgttc agatgcaatt gggccaagag aacaatggga
      421 accagtgttt caagatggga agatggcttt actggcctca aatagctgct ttattagatg
      481 taatgaagca ggcgatatag aagcaaagaa taaaacagca ggagaagaag aaatgataaa
      541 gatcagatcc tgtgcggaaa gagaagccaa gaagaaggac gacatcgcag aggaagacaa
      601 gggaagcgtg cagcagtgtg agatcaacta tgtaaagaaa tttcagagct tccaagacca
      661 taaactcaaa ataagcaaag aagatagtaa aattcttaaa aaggctcgga aagatggatt
      721 tttgcacgag acccttctgg acaggagagc caaattgaaa gccgaccgat actgcaagtg
      781 acgtggacat tgtgtgttgc tttggggttt tttctgtttc tttttttttt tttttttttt
      841 ttcctgaata aaaatatttg gtgtaagtgc ttttacagag
//
