LOCUS       XM_039094827             918 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FSHD region gene 1 (Frg1), transcript
            variant X1, mRNA.
ACCESSION   XM_039094827
VERSION     XM_039094827.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094827.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..918
                     /gene="Frg1"
                     /note="FSHD region gene 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 3 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 92 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
     CDS             154..819
                     /gene="Frg1"
                     /codon_start=1
                     /product="protein FRG1 isoform X1"
                     /protein_id="XP_038950755.1"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
                     /translation="MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKREEDEEAQLDIV
                     GIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKL
                     SDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCN
                     EAGDIEAKNKTAGEEEMIKIRSCAEREAKKKDDIAEEDKGSVQQCEINYVRAKLKADR
                     YCK"
ORIGIN      
        1 gatcactgta aacaggaaat aggagaattg tagccttgag ttgaggaggc ggagtattcc
       61 aaagaggttc cctctacttc gccgttagag ccacttcctc ctcccggacc tacgggatct
      121 ctaccggcgg ttgctatttc agggtgccga accatggccg aatattctta cgtaaagtcc
      181 accaaactcg tgctcaaggg cactaaagcc aagagtaaaa agaaaaagag caaagataag
      241 aagagaaaac gagaagaaga cgaggaagcg caacttgaca ttgtgggaat ctggtggact
      301 gtatccaatt ttggtgagat ttcaggaacc attgccattg aaatggataa aggagcctat
      361 atccatgcac tggacaatgg cctctttaca ctgggagcgc cacacagaga agtcgatgag
      421 ggccccagtc ctccagagca gtttactgct gttaaattgt ctgattccag aattgccctg
      481 aagtctggct atggaaaata tctcggtata aattcagatg gacttgttgt tgggcgttca
      541 gatgcaattg ggccaagaga acaatgggaa ccagtgtttc aagatgggaa gatggcttta
      601 ctggcctcaa atagctgctt tattagatgt aatgaagcag gcgatataga agcaaagaat
      661 aaaacagcag gagaagaaga aatgataaag atcagatcct gtgcggaaag agaagccaag
      721 aagaaggacg acatcgcaga ggaagacaag ggaagcgtgc agcagtgtga gatcaactat
      781 gtgagagcca aattgaaagc cgaccgatac tgcaagtgac gtggacattg tgtgttgctt
      841 tggggttttt tctgtttctt tttttttttt tttttttttt cctgaataaa aatatttggt
      901 gtaagtgctt ttacagag
//
