LOCUS       NM_001290133            1113 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus FSHD region gene 1 (Frg1), mRNA.
ACCESSION   NM_001290133 XM_001066552 XM_003752904
VERSION     NM_001290133.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On or before Feb 27, 2014 this sequence version replaced
            XM_001066552.3, XM_003752904.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1012168.1,
                                           SRR26643285.50749.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-195               JAXUCZ010000016.1  57629331-57629525
            196-266             JAXUCZ010000016.1  57631485-57631555
            267-392             JAXUCZ010000016.1  57632712-57632837
            393-450             JAXUCZ010000016.1  57633858-57633915
            451-565             JAXUCZ010000016.1  57636522-57636636
            566-670             JAXUCZ010000016.1  57646621-57646725
            671-762             JAXUCZ010000016.1  57647808-57647899
            763-873             JAXUCZ010000016.1  57648762-57648872
            874-1113            JAXUCZ010000016.1  57649949-57650188
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.1"
     gene            1..1113
                     /gene="Frg1"
                     /note="FSHD region gene 1"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
     exon            1..195
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..910
                     /gene="Frg1"
                     /codon_start=1
                     /product="protein FRG1"
                     /protein_id="NP_001277062.1"
                     /db_xref="GeneID:686103"
                     /db_xref="RGD:1585495"
                     /translation="MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKREEDEEAQLDIV
                     GIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKL
                     SDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCN
                     EAGDIEAKNKTAGEEEMIKIRSCAEREAKKKDDIAEEDKGSVQQCEINYVKKFQSFQD
                     HKLKISKEDSKILKKARKDGFLHETLLDRRAKLKADRYCK"
     exon            196..266
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            267..392
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            393..450
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            451..565
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            566..670
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            671..762
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            763..873
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
     exon            874..1113
                     /gene="Frg1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggagaattg tagccttgag ttgaggaggc ggagtattcc aaagaggttc cctctacttc
       61 gccgttagag ccacttcctc ctcccggacc tacgggatct ctaccggcgg ttgctatttc
      121 agggtgccga accatggccg aatattctta cgtaaagtcc accaaactcg tgctcaaggg
      181 cactaaagcc aagagtaaaa agaaaaagag caaagataag aagagaaaac gagaagaaga
      241 cgaggaagcg caacttgaca ttgtgggaat ctggtggact gtatccaatt ttggtgagat
      301 ttcaggaacc attgccattg aaatggataa aggagcctat atccatgcac tggacaatgg
      361 cctctttaca ctgggagcgc cacacagaga agtcgatgag ggccccagtc ctccagagca
      421 gtttactgct gttaaattgt ctgattccag aattgccctg aagtctggct atggaaaata
      481 tctcggtata aattcagatg gacttgttgt tgggcgttca gatgcaattg ggccaagaga
      541 acaatgggaa ccagtgtttc aagatgggaa gatggcttta ctggcctcaa atagctgctt
      601 tattagatgt aatgaagcag gcgatataga agcaaagaat aaaacagcag gagaagaaga
      661 aatgataaag atcagatcct gtgcggaaag agaagccaag aagaaggacg acatcgcaga
      721 ggaagacaag ggaagcgtgc agcagtgtga gatcaactat gtaaagaaat ttcagagctt
      781 ccaagaccat aaactcaaaa taagcaaaga agatagtaaa attcttaaaa aggctcggaa
      841 agatggattt ttgcacgaga cccttctgga caggagagcc aaattgaaag ccgaccgata
      901 ctgcaagtga cgtggacatt gtgtgttgct ttggggtttt ttctgtttct tttttttttt
      961 tttttttttt tcctgaataa aaatatttgg tgtaagtgct tttacagagc tctcgagtcc
     1021 ttttgaagtt gttgcttaat ttcgtatctg gcttaacctg actggtaagg gttagcctgg
     1081 tcctttgtgg gctttacttt tcaggtaatc gtc
//
