LOCUS       NM_001014246            1388 bp    mRNA    linear   ROD 02-APR-2024
DEFINITION  Rattus norvegicus FRA10A associated CGG repeat 1 (Fra10ac1), mRNA.
ACCESSION   NM_001014246 XM_345029
VERSION     NM_001014246.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1388)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1388)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1388)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC090036.1.
            
            On Apr 1, 2005 this sequence version replaced XM_345029.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC090036.1, SRR8487226.226748.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1388
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q53"
     gene            1..1388
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /note="FRA10A associated CGG repeat 1"
                     /db_xref="GeneID:365458"
                     /db_xref="RGD:1309482"
     exon            1..135
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     CDS             136..1083
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /note="fragile site, folic acid type, rare, fra(10)(q23.3)
                     or fra(10)(q24.2) candidate 1"
                     /codon_start=1
                     /product="protein FRA10AC1 homolog"
                     /protein_id="NP_001014268.1"
                     /db_xref="GeneID:365458"
                     /db_xref="RGD:1309482"
                     /translation="MHGHGGYDSDFSDDEQGGGSSKKRKKTVEDELLLTKPFQKEKYG
                     KVAHKQVAADLLDREEARNRRFHLIAMDAYQRHTKFVNDYILYYGGKREDFKRLGEND
                     KTDLDVIRENHRFLWNEEDEADMTWEKRLAKKYYDKLFKEYCIADLSRYKENKFGFRW
                     RIEKEVISGKGQFFCGNKCCDEKEGLKSWEVNFGYTEHGEKRNALVKLRLCQECSFKL
                     NFHHRRKEIKSTKKRSKTKTESDESPHKNSRSSSSEEASQGKDEGHSSSKRSEDSRNR
                     NAGEEDSASDSELWKGPLPETDEKSQEEEFDDYFQDLFL"
     exon            136..212
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            213..308
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            309..354
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            355..431
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            432..515
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            516..600
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            601..646
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            647..760
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            761..803
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            804..922
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            923..961
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1040
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1365
                     /gene="Fra10ac1"
                     /gene_synonym="RGD1309482"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgggcggc gacgctgcgt ggctctggag gaccggcgcg gacctgcagc ggctcgctga
       61 ggccgtgggt cgtcgctgca gctgtcagga ctcttggggc gaacttgcca gacagagagg
      121 agcggaaggg aagggatgca tgggcatggg ggctatgact ctgattttag tgatgatgag
      181 caaggtggag gatccagcaa aaagaggaag aagacagttg aagatgagtt gctgcttaca
      241 aaaccatttc aaaaagaaaa atatggaaag gtggcccata aacaagttgc tgcagacttg
      301 ctggacaggg aagaagcaag aaatagaagg tttcatctca tagctatgga tgcttatcaa
      361 aggcacacaa agtttgtaaa tgactatatt ttgtactatg gtggcaaaag agaggacttt
      421 aagcggttgg gggagaatga taagacagat ctggatgtta tacgagaaaa tcacagattc
      481 ctatggaatg aggaggatga agcagacatg acttgggaga agagacttgc aaagaaatac
      541 tatgataaat tattcaagga atattgcata gcagatctca gtagatacaa agaaaataag
      601 tttggattta ggtggcgaat agaaaaagaa gtaatttcag gaaaaggcca gtttttttgt
      661 ggaaataagt gttgtgatga aaaagaaggt ttgaagagct gggaagtcaa ctttggttat
      721 actgagcatg gtgaaaagag aaatgcgctt gttaagttaa gattatgcca agaatgttcc
      781 tttaaattaa attttcatca caggagaaaa gaaatcaagt ccacaaaaaa aaggtctaaa
      841 accaagactg agtctgacga gtcacctcat aagaactcca gatcctcatc ttcagaggag
      901 gcctcccagg ggaaggatga aggacattca tcctcgaaaa ggtcagaaga ttctagaaac
      961 agaaacgctg gtgaggaaga cagtgcttca gactctgagc tctggaaggg tccactgcca
     1021 gagacagatg aaaagtcaca ggaagaagaa tttgatgatt attttcagga tttgtttctg
     1081 tgacctggga gagagaacct tgtttatttc ttggtgagga aacgtacgca gacactcaat
     1141 gaccgtgtcc atgctgttga gtccggacag cactgggaca gatacttcag aggcacggga
     1201 cgtttcagac attttctcct tccctggtgt ggcttctcag tagctcatct aacacctgtt
     1261 tgggctctag ctctctggca tatgacaaac ttgtttcaag tgtcattgaa tgtggagtga
     1321 ttggctttaa gctgtaaata aattgcttag cttcttattc taaaaaaaaa aaaaaaaaaa
     1381 aaaaaaaa
//
