LOCUS       XM_056984500            3531 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FAD-dependent oxidoreductase domain
            containing 1 (Foxred1), transcript variant X7, mRNA.
ACCESSION   XM_056984500
VERSION     XM_056984500.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3531
                     /gene="Foxred1"
                     /gene_synonym="RGD1311785"
                     /note="FAD-dependent oxidoreductase domain containing 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 31 ESTs, 2 long SRA reads, 1
                     Protein, and 96% coverage of the annotated genomic feature
                     by RNAseq alignments, including 130 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:315547"
                     /db_xref="RGD:1311785"
     CDS             256..1155
                     /gene="Foxred1"
                     /gene_synonym="RGD1311785"
                     /codon_start=1
                     /product="FAD-dependent oxidoreductase domain-containing
                     protein 1 isoform X3"
                     /protein_id="XP_056840480.1"
                     /db_xref="GeneID:315547"
                     /db_xref="RGD:1311785"
                     /translation="MSPEQMQNKFPWMNAEGVALASYGLENEGWFDAWSLLQGLRRKV
                     QSMGVFFCQGEVTRFITSSNQMETPTGEQVVLRRINNVHVKMDKSLEYQPVECAVVVN
                     AAGAWSGQIAELAGIGKGLPGTLQGTKLPVEPRKRYVHLWHCPQGPGLETPLVADISG
                     VYFRREGLGSNYLGGCSPTEEEEPDPTNLEVDHDFFQNKVWPHLVQRVPSFKTLKVQS
                     AWAGYYDYNTFDQNGVVGPHPLVVNMYFATGFSGRGLQHAPGIGRAVAEMILEGHFKT
                     IDMSPFLFTRFYLGEKLQEHNIL"
ORIGIN      
        1 gtattcacgg gcttcctcca cagggccttc tgtgggcggg atttggcagc agttttctgt
       61 tcccgagaat gtccaactct cactcttttc aatcaacttt ctacggaaca taaatgagta
      121 cctagctgtg gtggacgccc ctcctgtgga acttcggttc aacccctcag gctgtctctt
      181 gctagcttca gaaaaggatg ctgccacctt ggaaagcaat gtgagaatgc aaaggaagga
      241 gccaaggtct gtctgatgtc tcctgagcag atgcagaaca agtttccctg gatgaacgca
      301 gagggagtgg ctctggcatc ttatgggttg gagaatgaag gttggtttga tgcctggtct
      361 ttgctccagg gtcttcgtcg aaaggtccag tcaatgggag tctttttctg tcagggagag
      421 gtgacacgtt tcatcacttc atctaaccaa atggagactc caactgggga acaggtagtc
      481 ttgagaagga tcaacaatgt ccacgtgaaa atggacaaga gcctggagta tcagccagtg
      541 gaatgtgctg tagtggtcaa tgccgcagga gcctggtctg gacaaattgc agagttggct
      601 ggtattggaa agggacttcc tggcaccctc cagggcacca agctacctgt ggagccaagg
      661 aaaaggtatg tgcacttatg gcactgcccg cagggaccag gtctggagac accgttggtt
      721 gcagacatca gtggagtgta tttccgacgg gaaggattgg gcagcaacta cctagggggc
      781 tgtagcccta ctgaggaaga agaaccagac ccaacaaatc tggaagtgga ccatgacttc
      841 ttccagaaca aagtgtggcc ccatttggtc cagagggtgc catcttttaa gactctgaag
      901 gtacagagtg cctgggctgg ctattatgac tacaatactt ttgaccagaa tggcgtggtg
      961 ggcccccacc cactagttgt caacatgtac tttgctacgg gcttcagtgg tcgtggactt
     1021 cagcatgcac ctggcatcgg tcgagctgtg gcagaaatga tactagaggg tcactttaag
     1081 accatcgata tgagcccctt cctcttcacc cgcttttact taggagagaa gttacaggag
     1141 cacaatattc tctgaatgtg aaactcttct ctgggccttg ccttgtctca tgttggcttt
     1201 ggtcactgcc caagtctccc cagaactgtg ccaggaatac atccctttcc tcaccgtcct
     1261 ttaaaccagg cctcttccca gtgtctctga aatggaataa acaaaggcac agagaccagg
     1321 ccaatggaaa gtaacacagt gggaccctag ggctgattgt agcctaggct gattcactac
     1381 ccaaacagtt cagctggcat cctgggcatg gtgcccagga ctggcctcct tcctggtgct
     1441 gatacagaga aatctgacca gagccaaggc acagagcatt ccaggatagc ctgacccaaa
     1501 tttattgact tgtctaataa cttattcttc aatcaacata tgtatatgat taaccccttc
     1561 tctctggcct tatattcttc ccacttttct tctcatagta gaagcatttg aagtattgtg
     1621 ccattaaaaa ggcagcttta gggctgaaga gatggttaag aaccctgact gctcttccag
     1681 aggccctgag ttcaattcct agcaagcaca tggtggctca caaccatctg taatgggatc
     1741 tgatgccctc atctagtctg tctgaagaca gtacaatact catgtattta aaaaaaaaaa
     1801 aaaaaaaaaa aagacaacct catcctcttg agagtatttc ttaaattctc tgtgggagac
     1861 atcttgtttg caagcttgta tcctgttacc tgagttctac ggcaaccatg gttctagcga
     1921 atgaaatgga gtcattcatc tagtcaactt ctataaagct ccagcttctg gctactgaca
     1981 ttcagtctat agcaggattc aaagtggctt tctgagtgga tcatggagct ttgtggggaa
     2041 aaagtagcca gcatctgaag agccacactg agaagcttgg atttcatctc agcagagacc
     2101 cagcagaaga tttttaaaga tggaagcaat atgatcagat cttcctttta ggcggcagat
     2161 tgcttgctta gcatgtggat ggccccgggt ttgatactca gcaccaacag cagagaggat
     2221 ctgggggaag tcactggctt ccttgtagag aatagagtca gagagcaaag caggaaagca
     2281 ggctctagat aaagactgtt tcagtctact tagcagtcat ggtgggaaac acatggaatg
     2341 atgtgacaat gccaatgtga catggagtca gtatttcccg gctttctggc taaacagcta
     2401 aacaagtacc atgcttctta ccaaaatgac agagggaaca gcaaaatgag tagtctgatg
     2461 tgggacaaac tgaaaggaaa gtgcctgtgg gaggtgtgat gggtgattgc actagttggg
     2521 tggacaggtg acagaacagc atcaccaaag gagagcaaaa tgtagggaca actaaaaagc
     2581 tggagtatcc actgacattt agagaaaaca gatgaacgct gaaggactga cccatgaggc
     2641 aggagaaaat ccagtgatac ggaatcatga agaccaagaa gtaggcacca gaatgaaatg
     2701 tcccatgcca gctgggctca gcacctagca ctcactggtg accagggaat gcaatctaag
     2761 gcacatagta gagtagaaaa tcttgggaaa atggctcctt catcagaagt cctttggagt
     2821 aaataaaaag taaaagaggt agatatcata taggggaggg gacaggagaa gagatgggcc
     2881 agctgggagt ataaagcctg tgtggtttga agagcgccag gaatgaggca gtaagcaaaa
     2941 gaaaagtcac cagaagataa tgctgaaata tcatgtcagg aacagcgtgg acaggcttta
     3001 ggttaaagag gaaaaatcag agacttggat tataaattag ccctggatta tagaggtgcc
     3061 ctgtagcaga attttaacag aatgtttgta tctgccatga atctggagta atggcaccta
     3121 agctttgaag tagcttttgt cagtgattgt tatctgagat ttttatgggg ttattccttt
     3181 gaaggttttt tcagcctttg catatcatag tcaggagata ggtctggcaa accgggacat
     3241 ctcccatggt tgagaattgc ttaggtgatt gtaggatgat gtcatacagg tgaaggcagg
     3301 tacaagatag aatgaggcct gtcattggac gagaaggaag gatgggcggg agaaaagttt
     3361 tagagagagg agactggaac cagaggagag aagcagctag gagaaaatgg aggtggatgt
     3421 taagatccct ctctgtacac ttacaggttg ttatgaatat tcttaaggga tgtatatgtc
     3481 cagggctttg tatgtttagg tgggcaatta tatcttatca attggatcag a
//
