LOCUS       XM_039100345            3748 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box R2 (Foxr2), mRNA.
ACCESSION   XM_039100345
VERSION     XM_039100345.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100345.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3748
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3748
                     /gene="Foxr2"
                     /note="forkhead box R2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:302583"
                     /db_xref="RGD:1564437"
     CDS             1005..1913
                     /gene="Foxr2"
                     /codon_start=1
                     /product="forkhead box protein R2"
                     /protein_id="XP_038956273.1"
                     /db_xref="GeneID:302583"
                     /db_xref="RGD:1564437"
                     /translation="MNVKVKNRDFWYSLHGQVPGMLDWDMGNEFFLPCTMDQCSFAEQ
                     SLAKYKIQLTKPPTLPQEKKSSFDNDGPPTEPSLWMWVNPNIVCPVNSKEPPNPIHKV
                     LPSAAFPQTGESECFGTQRVAQSLSVIHTEYHQQQKLPIYSTVPHFMEEETKEQECAS
                     SKKYSKKYTMYHGPHREREAWPRPPLNYSHLVALALKSSPSCGLNVQQIYNFTRQHFP
                     YFRTAPEGWKNTIRHNLCSLTCFEKVPADLEDEPDGKPRSFLWKLTEEGNRFFQEDTR
                     VLAYARRESIKQSMRQPELIDLLFHL"
ORIGIN      
        1 ggaggctttt gtttaggcct gcccacagca gtaaagttat tcttcctcat aaggctagct
       61 cctagacaac actctgcatt tgggtcccct tcatggcaca gacagattta cagttgacgc
      121 aaccacacat acaaagtttc atttcatttc tattggcagg tttaaattta gccccgcctc
      181 caggatgttt ttgttcatag gccaattcta atgcttacat cagcaagctt gtcctatagg
      241 aaaagcctgt tgagatctgc ttctagaacg ttctgtctgc ttttgttagt gatggtaata
      301 catgtttttt tccccgctat ttccagtcat ttgggcagct ctgtgatatt agagtcactt
      361 gtcttcgatc tagacctcag ctccagcagg cactccctgg gaacccaaag gccactcccg
      421 ccaagcaagc aggaaggtga ggtcatacct tttgcaaaac aagcagtaag agacaaagga
      481 gttatggaat cttacatcag catatcttat aattgaaaag ccattgcaaa taagctagtg
      541 agtctcccca tcatttcaag gcgattgaag tgttagaatg aaagaaaaga aaattttgtc
      601 tctgaggctt ttgaactcat attgcagcat tcaaagcgcc ttcaaaatta aagatgaaag
      661 attttactca actacctaga aaacacacct atgacttgcc aagagctatc aaaacattta
      721 tttgtgatca acagtgagaa aagacttgga aaaatctgaa aacatttttt cctaataaaa
      781 tgatcttctt agttactctt ttgagctgta tctcagaaag ctgcggcttc tctgaccagt
      841 gaagtatcag tgtcctcggg tcagcccttc cagcaggcct actgatagat tgcactggag
      901 aggagacact ttgcattaaa tagtgccccc gtgatatcat cataaagttc tggagagact
      961 tttatctatt tggaagttta ccttcatcta tctcttcagt aaagatgaat gtaaaggtaa
     1021 aaaatcggga cttctggtac agtctccatg gtcaagtccc cgggatgctg gactgggaca
     1081 tggggaatga atttttcctc ccttgtacca tggatcagtg ctctttcgct gagcagagtc
     1141 ttgccaaata taaaatccaa ctgacaaaac cacctacact gcctcaggag aagaaatcca
     1201 gttttgataa tgatggtcct cccactgaac ccagcttgtg gatgtgggtg aatcctaaca
     1261 ttgtgtgccc cgtcaacagc aaggagcctc caaatcccat tcacaaagtt ctgccaagtg
     1321 cagcattccc acagactggc gagtctgagt gcttcgggac ccagagagtg gcacagtccc
     1381 tatctgttat ccacactgag tatcatcagc aacaaaagct gcccatttac tccactgtcc
     1441 ctcatttcat ggaagaggag actaaggaac aggaatgcgc atcctctaag aaatactcaa
     1501 agaagtacac aatgtaccat ggcccccacc gagagaggga ggcctggcca cgccctcctc
     1561 tcaactacag ccatctagtt gctcttgcat taaaaagcag cccttcctgt ggcctcaatg
     1621 tgcaacagat ctacaatttt actcgacaac atttccccta tttccggaca gcaccagagg
     1681 gctggaaaaa caccattcgc cacaacctct gctccttgac ctgctttgaa aaggtaccag
     1741 ccgaccttga agatgagcca gatggaaaac ctcgatcttt cctctggaag ctcactgagg
     1801 agggaaaccg attctttcag gaggacaccc gtgtcttggc ctatgctcga agggagagca
     1861 tcaaacagag catgcgccaa ccagaactga tagacctcct ctttcatctt taatagtttc
     1921 ttcttttctt atgtgtgtgt ggtatgtgta agtgtgagta tgcatgcttg tatgtgtgtg
     1981 ggcatacatg tgcacatgtg tgtggaagcc caaggctgac atcaagattt tccctccatt
     2041 gctcttccac ctcattcttt gaggcagggt ctttcactca aacccagagc tcatagatac
     2101 tgtgagtctc acttgccagc ttgctcccag gatcccctgt ctgtgcatgc attccatagc
     2161 tgagattgta ggcaggtcat catgcccacc cagtttggtt tcggggatct gaatgcagat
     2221 cctcttgctt gcatggcagg cactttaact gctgagccat ctccccagcc tcctctgtca
     2281 tttctgaaag acaactgctc actttctgga acactgccct gcttaccgtg ctgaactaac
     2341 ccttactcat cggtaatcct actctgtttg gttggcacca agcctgtctt tagccactgt
     2401 taaatagtca gaggtgacta caggggaggc agagactaaa tccaggtgta gaaggattga
     2461 aagttataca acagctgaat tgttctacac tctgagcaga ggcagaaagt cttaggaacc
     2521 atggcaagca atctaaggct agaagaatat gttacatctt ttggagcaaa ctgtgaaatg
     2581 taagggatga atatgaaata aacccaggat atgggcaacc tccactgcca tgtgaaggta
     2641 tatgtgtata aaaagaacta ggcttggtgt ttaaagtatg gagactcaaa tatccccctc
     2701 caccattcat tgttttcatc ttcttttgac gtgacccatt gtacccttca gagcctcact
     2761 ttcctttctt gtcctagact taatagcttt gttctattgc tatccagttc cagcagtgaa
     2821 aaatgcaggc agctgttatt tgtttgaata ttgaaagtcc ttaaattgat tgtgtattaa
     2881 tcctaagctt tttgatgaca gtgcattggt gctcatttgt ggttttcagc aaatgttatt
     2941 tgaggaactg taaggtccat cttaggtgtt aaaagataga aagcaaacgc atatttgtga
     3001 ggcatcgata tttatgtgtg ataaaacaga ggtgcgaagt tgccatggaa atggggacac
     3061 atccttcctg gaaacaggga agcattaaaa atgaagtgcc ttttgagcta aatttgaaga
     3121 acaaagagga atttgctgag cacataaact gagaagaaac attatggcgg acagtgtgaa
     3181 tagcattaac caggtgtttg gtgtattcta ggaagacagc tatactaggt tcctgagcca
     3241 ctgtaagaaa ggtaaccaaa ctgcttttac gctgtgctta tgtgtttaag gctatacaga
     3301 actaagaaac ataatttgtg cattgctaaa aaaaagcaca aacaaaatac caacataaca
     3361 aatgtttcag cctttgactc taattttaaa atttattttt tgtaggcact aagttcataa
     3421 aatgtaaacc tagtttttgc cttttgtctt aatacatttt taaatatata ccaacactta
     3481 ggaaatagct tttaagtatg tgattagttg ccaagtaatc aatgagagta taatatctat
     3541 accatacaaa agcaggtgat ttaatatgat tacaacaatg gagaccttac tttttaatgg
     3601 cttactacag cagatacaaa accgtttagg tttaattgca aaggctgcat aatccagcaa
     3661 aatcatttcc aaaagtaatt gtaaatgtca cttctgtatc atagttactt tgaaaatgtt
     3721 gacaaaacag tctgtactta ataaactt
//
