LOCUS       XM_006242968            1363 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box R1 (Foxr1), transcript
            variant X1, mRNA.
ACCESSION   XM_006242968
VERSION     XM_006242968.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006242968.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006242968.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1363
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1363
                     /gene="Foxr1"
                     /note="forkhead box R1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:315601"
                     /db_xref="RGD:1309739"
     CDS             63..983
                     /gene="Foxr1"
                     /codon_start=1
                     /product="forkhead box protein R1 isoform X1"
                     /protein_id="XP_006243030.1"
                     /db_xref="GeneID:315601"
                     /db_xref="RGD:1309739"
                     /translation="MGNECFLSFTTSHLSEAEQKLALYRLRIVEPPKLPLEKIPNPDK
                     DGPDIKPNLWMWVNPNIVYPPGKLEVAVKKEDSSSAPPASQSALKEEDSCSEASEIPA
                     QQPPPPRKQKRKQKEKHIASSPSIWEEPTEEEEAKDRDDSFSVALPSLPTRAPLQNRW
                     RLRQAISPEGRLWSRPPLHYFHLIALALRNSPPCGLSVQQIYNFTREHFPFFRTAPEA
                     WKNTVRHNLCFRDSFEKVPVSKQGEASTRPRSCLWKLTEEGHRRFSEEARTLASTRLQ
                     SIQQCMSQPGVKPCQVHEPRGGGPEAQTLG"
ORIGIN      
        1 tccaggaccg ggacttctgg gccagcctcc atggccaggt cccgggcttg ttggactggg
       61 atatgggcaa tgagtgcttc ttgtccttca ccacgtcaca cctgtcggag gccgagcaga
      121 aacttgccct atacagactc cgaatcgttg aaccaccaaa actgcctttg gaaaaaatac
      181 ccaaccctga taaagatggc ccagacatta agcccaatct gtggatgtgg gtgaacccaa
      241 acatcgtgta tcctcctggc aagctggagg ttgcggtcaa aaaggaagac tcgtcgagcg
      301 caccacctgc ctcccagtca gccctgaaag aggaagacag ctgttccgaa gcctcggaga
      361 taccagcaca gcagccaccg cctcctcgca agcagaagag gaagcagaag gagaaacaca
      421 ttgcctcttc ccctagcatc tgggaggagc ctacagaaga ggaggaggcc aaggaccgtg
      481 atgacagctt ctctgtggct ctcccatccc ttcccacaag ggccccactc cagaatcggt
      541 ggaggctccg gcaagccatc agcccagagg ggcggctctg gtcccgcccc cctcttcatt
      601 acttccatct cattgccttg gcactcagaa acagtccccc ctgtggcctc agcgtgcagc
      661 agatctacaa cttcactcga gagcacttcc cctttttccg gacagctcca gaagcctgga
      721 agaatacagt tcgtcacaat ctctgtttcc gagacagctt tgagaaagtg ccggtcagta
      781 agcaggggga ggccagcact cggcctcgat cctgcctctg gaagttgacc gaggagggac
      841 atcgccgatt ttcagaggag gcccgcaccc tggcttccac tcggctgcag agtatccagc
      901 agtgcatgag ccagccaggt gtgaagcctt gtcaagtgca tgagcccagg ggtgggggac
      961 ctgaggccca gaccctaggc tagatgtgcc tccctcaatc agactctaaa gacatctaaa
     1021 gggagaacag gagtgatgag tttgtgagtg agagtttgtg tacaaggaat agggaaacag
     1081 gttgctgcag gctctgctca cagcccagaa tcctggccca atggcgttcg agctgggtaa
     1141 aaagtatgag ggtttatctg ctaagaggat tctaccgtaa cgagcagaaa ggcttcaaaa
     1201 gaggtagcgt tggaccctta agctccgtga gatagtatag cagacccggg acagcaggtc
     1261 aagattgcaa gctcctctga actctcttac agatgtgatg cccttcctct ttgaccttca
     1321 agaataagaa tcagccatgc cctattaaag attccttcag caa
//
