LOCUS       NM_001389210            4000 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus forkhead box P4 (Foxp4), mRNA.
ACCESSION   NM_001389210 XM_008766869
VERSION     NM_001389210.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4000)
  AUTHORS   Li,S., Wang,Y., Zhang,Y., Lu,M.M., DeMayo,F.J., Dekker,J.D.,
            Tucker,P.W. and Morrisey,E.E.
  TITLE     Foxp1/4 control epithelial cell fate during lung development and
            regeneration through regulation of anterior gradient 2
  JOURNAL   Development 139 (14), 2500-2509 (2012)
   PUBMED   22675208
REFERENCE   2  (bases 1 to 4000)
  AUTHORS   Takahashi,K., Liu,F.C., Hirokawa,K. and Takahashi,H.
  TITLE     Expression of Foxp4 in the developing and adult rat forebrain
  JOURNAL   J Neurosci Res 86 (14), 3106-3116 (2008)
   PUBMED   18561326
  REMARK    GeneRIF: Foxp4 was developmentally down-regulated such that Foxp4
            was undetectable in the forebrain after postnatal day 14
REFERENCE   3  (bases 1 to 4000)
  AUTHORS   Hannenhalli,S., Putt,M.E., Gilmore,J.M., Wang,J., Parmacek,M.S.,
            Epstein,J.A., Morrisey,E.E., Margulies,K.B. and Cappola,T.P.
  TITLE     Transcriptional genomics associates FOX transcription factors with
            human heart failure
  JOURNAL   Circulation 114 (12), 1269-1276 (2006)
   PUBMED   16952980
REFERENCE   4  (bases 1 to 4000)
  AUTHORS   Li,S., Zhou,D., Lu,M.M. and Morrisey,E.E.
  TITLE     Advanced cardiac morphogenesis does not require heart tube fusion
  JOURNAL   Science 305 (5690), 1619-1622 (2004)
   PUBMED   15361625
REFERENCE   5  (bases 1 to 4000)
  AUTHORS   Li,S., Weidenfeld,J. and Morrisey,E.E.
  TITLE     Transcriptional and DNA binding activity of the Foxp1/2/4 family is
            modulated by heterotypic and homotypic protein interactions
  JOURNAL   Mol Cell Biol 24 (2), 809-822 (2004)
   PUBMED   14701752
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 26, 2020 this sequence version replaced XM_008766869.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.49023.1,
                                           SRR26643429.33021.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-437               JAXUCZ010000009.1  20556270-20556706
            438-673             JAXUCZ010000009.1  20575374-20575609
            674-769             JAXUCZ010000009.1  20591929-20592024
            770-892             JAXUCZ010000009.1  20599299-20599421
            893-979             JAXUCZ010000009.1  20599826-20599912
            980-1127            JAXUCZ010000009.1  20601311-20601458
            1128-1341           JAXUCZ010000009.1  20601566-20601779
            1342-1446           JAXUCZ010000009.1  20602014-20602118
            1447-1534           JAXUCZ010000009.1  20602786-20602873
            1535-1618           JAXUCZ010000009.1  20604132-20604215
            1619-1787           JAXUCZ010000009.1  20604374-20604542
            1788-1864           JAXUCZ010000009.1  20604625-20604701
            1865-1966           JAXUCZ010000009.1  20605387-20605488
            1967-2088           JAXUCZ010000009.1  20608705-20608826
            2089-2155           JAXUCZ010000009.1  20610297-20610363
            2156-2325           JAXUCZ010000009.1  20610805-20610974
            2326-4000           JAXUCZ010000009.1  20611293-20612967
FEATURES             Location/Qualifiers
     source          1..4000
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..4000
                     /gene="Foxp4"
                     /note="forkhead box P4"
                     /db_xref="GeneID:363185"
                     /db_xref="RGD:1311386"
     exon            1..437
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            438..673
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     CDS             455..2473
                     /gene="Foxp4"
                     /note="CCR4-NOT transcription complex subunit 3-like;
                     serine/arginine repetitive matrix protein 1"
                     /codon_start=1
                     /product="forkhead box protein P4"
                     /protein_id="NP_001376139.1"
                     /db_xref="GeneID:363185"
                     /db_xref="RGD:1311386"
                     /translation="MMVESASETIRSAPSGQNGVGSLSAQADGGGGAGTAGTAPAAGR
                     DASGREAASGADSNGEMSPAELLHFQQQQALQVARQFLLQQASSLNSPGNNDSKQSAS
                     AVQVPVSVAMMSQQMLTPQQMQQILSPPQLQALLQQQQALMLQQLQEYYKKQQEQLHL
                     QLLSQQQAGKQQPKEALGNKQLAFQQQLLQMQQLQQQHLLNLQRQGLVSLQPSQASGP
                     LQALPQAAVCPTDLPQLWKGEGAPGQPAEDGGRQEGLDLASPAATATSFASPPKVSPP
                     LSHHPLPNGQPTVLTSRRDSSSHEETPSSHPLYGHGECKWPGCETLCEDLGQFIKHLN
                     TEHALDDRSTAQCRVQMQVVQQLEIQLAKESERLQAMMAHLHMRPSEPKPFSQPVTVS
                     ADPFPDGLVHPPTSAAAPVTPLRPPGLGSASLHGGGPARRRSNDKFCSPISSELAQNH
                     EFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVR
                     HNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASY
                     QAALAESSFPLLSSPGMLNPGSASSLLPLSQDDMGAPGEPLPSNGSSSPPRLSPPQYS
                     HQIQVKEEPAEAEEDRRPGPPLGAPNPSTVGPPEDRDLEEDLAGEDMS"
     exon            674..769
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            770..892
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            893..979
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            980..1127
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1128..1341
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1342..1446
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1534
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1618
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1619..1787
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1788..1864
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1865..1966
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1967..2088
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2089..2155
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2156..2325
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2326..4000
                     /gene="Foxp4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggagtccgg agccggtcgc ccctgcggac cggacagtgc caccggctgc cgggacggag
       61 ccccccagca cgcgatcagg gcgcggcgca ggcggccgcg gcgcggcggg gaggagcccg
      121 ggccggaacc agggctgggc cgggggcggg gacgccgggg tcccggagcc ccggagccgg
      181 agcgagctca ggagcgtcgc cggagcccgg ggaagggcga tcggaagccg gagagagcta
      241 agccatccta caaagtgcga tgcccccaag gggctgaggc gcgcggcgat cggcgctaga
      301 aagatcgctt cggagcggcg cggcgcgcag gggcagcccc ggcgagtggc ggcgggcccg
      361 ggctgcgacc cgagcgagcc ccatgccccg tgctggctga cgggccggag cccgcactga
      421 gcggccgggc cggacaggtc ccgatagagc ggcaatgatg gtggagtctg catcggagac
      481 aatcaggtcg gctccgtctg gtcagaacgg cgtgggcagc ctctctgcgc aggctgatgg
      541 cggcggtggg gccgggaccg caggcacggc cccggctgcg ggcagggacg cctcaggcag
      601 ggaagcggcc agcggagctg acagcaacgg cgagatgagc cccgcggagc ttctgcactt
      661 ccaacagcaa caggctctcc aggtggcccg gcagttcctg ttgcagcaag cctccagcct
      721 gaactccccg gggaacaatg acagtaaaca gtcggcctct gcagtgcagg tgcctgtgtc
      781 tgtggccatg atgtcccagc agatgcttac cccccagcag atgcagcaga tcctgtcgcc
      841 acctcagctg caggccttgc tgcagcagca acaggctctc atgctccaac agctgcagga
      901 atattacaag aagcagcagg aacagctcca cttgcagctc ctcagccagc agcaggctgg
      961 gaaacagcag cccaaagagg ctctggggaa caaacagctg gccttccagc agcagctcct
     1021 gcagatgcaa cagttgcagc aacagcactt gctcaaccta cagaggcagg ggctggtcag
     1081 cctgcagcct agccaagcct cagggcccct ccaggccctc ccgcaagcag ccgtgtgccc
     1141 gacagacctg ccccagctgt ggaaaggcga gggtgccccg gggcagcctg ctgaggatgg
     1201 cggcaggcag gaggggctgg acctcgccag cccagctgct actgctacct cgttcgccag
     1261 ccctcccaag gtctccccgc ccctctccca ccacccctta cccaacggac aacccactgt
     1321 gctcacatct cggagagaca gctcctccca tgaggagacc cccagttccc accctcttta
     1381 tggacatgga gaatgcaagt ggcccggctg tgagaccctg tgtgaagacc tgggccagtt
     1441 tatcaaacac ctcaacacag agcatgcttt ggatgaccgg agcacggccc agtgccgcgt
     1501 gcagatgcag gtggtccaac agctggagat ccagctggcc aaggagagtg agaggctgca
     1561 ggccatgatg gcacatctgc atatgcgacc ttccgagccc aagcccttca gccagccagt
     1621 gaccgtctcc gcagacccat tcccagatgg cctcgtgcac cccccaactt cagccgctgc
     1681 ccctgtcaca cccctgcgtc cccctggcct gggctctgcc tctttgcacg gtgggggccc
     1741 tgcccgcagg agaagcaacg acaaattctg ctcccccatc tcctcagagc tggcccagaa
     1801 tcatgagttc tacaagaacg cagacgtcag gccccccttc acctatgcct cccttatccg
     1861 ccaggccatt ttggagactc cagataggca gctgacccta aatgagatat ataactggtt
     1921 caccaggatg ttcgcctatt ttcgaagaaa cacggccacc tggaagaatg ccgtgcgcca
     1981 caacctcagc ctgcacaagt gtttcgtccg cgtggagaat gtcaaggggg ccgtgtggac
     2041 tgtggatgag cgggaatatc agaaacggag accgccaaag atgacaggga gccccactct
     2101 ggtgaagaac atgatctccg gcctcagtta tggggcactt aacgccagct accaggctgc
     2161 cctggcagag agcagcttcc ctctcctcag cagccccggc atgctgaacc ctggctcagc
     2221 cagcagcctt ctgcccctca gccaggatga catgggcgcc cctggggaac cactacccag
     2281 caatgggagc agcagccccc ctcgcctctc ccctcctcag tacagtcacc agatacaagt
     2341 caaagaggag cctgctgagg cagaggaaga ccgacggccg ggacctcccc tgggcgcccc
     2401 caaccccagc actgtggggc ctccagaaga cagggacctg gaggaggacc tggcaggaga
     2461 ggacatgtcc taagggctgg gtgggcaggc agggcagaac aagaccctgc cgcccagtct
     2521 ggaccccggc ccacccaccc cactttacag cccctccaac ctcaaggcac ttcggggact
     2581 tggacagggg agacctgggc cccacgccac ctgactgaca gacgcctggg ggcaggcaca
     2641 tccctgcctc cccaagagaa cacagaatcc ttggactggg acctatagag gacatggagg
     2701 gcccagaccc tctcagcccc tccctgtatt cccaaccacc accagcagca gcagggctct
     2761 ccctccccac cagcgctccc ctccagggcc ccttagcaca ggggagaccc gcaggcgggg
     2821 ctgagccacc cccacaaacc ctaccttcat cccctctgcc ctgtcagtgg cagaggtttc
     2881 tggccagagg acccttcctg gttcatcttc cctcaccttc ttttcccaac tgtgaaaatt
     2941 agttctccag ccccagcttc ccgttcgatg gggcgagcag gctgggggta cacctgcagg
     3001 ccagcccctc agctgctggg gtggagcaag ttgtgccctg ccctccccta ccccaccccc
     3061 gacctgagac aggatccaga ctaagcaggc ctccacccca ccctgtttgc tgggtactcc
     3121 tgcggcaccc cgacttgagg aagcactgag ggacccccat gctgggcacc ttcagagctg
     3181 tgtgcatagg tggcctctgc ccagagcatc acagcacgaa gtaagccagg ctggaactac
     3241 cctcacccca gcctaggggt cccctgaatt ggggtcctct cacccccctc agcacccctt
     3301 cctgtccccc ctcccctccc ctcctcccag ttaaacggat gaccaaagac ctttcttatg
     3361 ccggaagcaa aaaccaaaac tttttgttgg ctttttcttt tgccgcctcc ccgagcatcc
     3421 tgccctccca accctgcctc ctggccccag gctggaagcc cctccttcac ttaagttatt
     3481 gttttaaacc aaagtttaca gtgtctgttg gtggcaagac cccctttctt ccctcccccc
     3541 aagggtccag gggtcctatt cacttccccc tctgctctta ccttgcctac ggagatagga
     3601 gagggcagaa ccctgcccca accctgggct gctttctgag ggggctcctc agatgcctcc
     3661 ataggaccaa gtccccatca tgccgggagt gtggattcta gcagaagagc tagaaacgat
     3721 gagattccac agacccccta tgggggaccc acaacccaag gccacgcacg gactgggtgt
     3781 aagggatgcc tagaacaccc tgaccaggcc ccttccctta gaaagacttc ttgggtattt
     3841 cccaggagaa ccccacattc accaccaacc ctctatccct accctacaca caagctgccc
     3901 tcctgagagg caaggggcac cccccggcct tcccctatgt atccccacct gtgttccgtt
     3961 tgacccagca cagaaatatt aaaatcctct atttaccggg
//
