LOCUS       XM_039099795            1683 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P3 (Foxp3), transcript
            variant X2, mRNA.
ACCESSION   XM_039099795
VERSION     XM_039099795.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1683
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1683
                     /gene="Foxp3"
                     /gene_synonym="RGD1562112"
                     /note="forkhead box P3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:317382"
                     /db_xref="RGD:1562112"
     CDS             245..1336
                     /gene="Foxp3"
                     /gene_synonym="RGD1562112"
                     /codon_start=1
                     /product="forkhead box protein P3 isoform X2"
                     /protein_id="XP_038955723.1"
                     /db_xref="GeneID:317382"
                     /db_xref="RGD:1562112"
                     /translation="MLTFLHHPWNACDFTPLLSFQPASDKNLMPNPRPAKPMAPSLAP
                     GPSPGGLPSWKTAPKGSELLGTRGPGGPFQGRDLRSGAHTSSSSLNPLPPSQLQLPTV
                     PLVMVAPSGARLGPSPHLQALLQDRPHFMHQLSTVDAHGHTPVLQVRPLDNPAMIGLP
                     PPTAATGVFSLKARPGLPPGINVASLEWVSREPALLCTFPRSGTPRKDSNLLAAPQGS
                     YPLLANGVCKWPGCEKAFEEPGEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLEL
                     EKEKLGAMQAHLAGKMALTKAPPVASVDKSSCCLVATSTQGSVLPAWSSPREASDSLF
                     AVRRHLWGSHGNSTFPGHPGSSREAEDTQ"
ORIGIN      
        1 aaccaactcc ccattgcccc gcatccatga caggactgtg tggtgtatgc aagcaagtga
       61 ggtgctggac atatgcgtgt gtgggatata tacatcaacc tgtgctcctg atatcaggga
      121 aggtagggta tgtgtatgta agacaggcca gaggtatagt cacggggccc tttgtggcat
      181 gtcccagcca acacctattc tgaccagagg ctggaaatgt tgaactatct tacaccatct
      241 gtaaatgttg actttcttac accatccctg gaatgcatgt gacttcactc cactgttgtc
      301 ctttcagcct gcctcagaca agaacctgat gcccaaccca aggccagcta agcctatggc
      361 tccttccttg gcccctggcc cgtccccagg aggcttgcca agctggaaga ctgcgcccaa
      421 gggctcagaa ctcctaggga ccaggggtcc tgggggaccc ttccaaggcc gggacctgcg
      481 aagtggggcc cacacctcct cttcttcctt gaaccccctg ccaccatcac agctgcagct
      541 gcctacagtg cccctagtca tggtggcacc ctctggggcc cgactaggcc cctcaccgca
      601 cctgcaggca cttctccagg acagaccaca ctttatgcat cagctctcca ctgtagacgc
      661 acatggccac acccctgtgc tacaagtgcg cccactggac aacccagcga tgatcggcct
      721 cccaccgcct actgctgcca ctggagtctt ctccctcaag gcccggcctg gcctgccacc
      781 tgggatcaat gtggccagtc tggaatgggt gtccagggag ccggctctac tctgcacctt
      841 cccacgctca ggtacaccca ggaaagacag caaccttctg gctgcaccac aaggatccta
      901 cccactgctg gcaaacggag tctgcaagtg gccgggttgt gagaaggcct tcgaggagcc
      961 gggagagttt ctcaagcact gccaagcaga tcacctcttg gatgagaagg gcaaggccca
     1021 gtgcctcctc cagagagaag tggtgcagtc tctggagcag cagctggagc tggaaaagga
     1081 gaagctggga gctatgcagg cccacctggc tgggaagatg gcattgacaa aagctccacc
     1141 tgtggcctca gtggacaaga gctcctgctg cctcgtagcc accagcaccc agggcagcgt
     1201 cctcccggcc tggtctagtc cccgggaagc ttcagacagc ttgtttgctg tgcggagaca
     1261 cctctgggga agccatggaa acagcacctt tccaggccat cctggaagct ccagagaggc
     1321 agaggacact caatgaaatc taccattggt tcacacgcat gttcgcctac ttcagaaacc
     1381 accccgccac ctggaaggtg agtgcctctg tacacactgc cggctgtgat ggttccaagg
     1441 gtggctaacc tggggctaaa tgtgtgggga agtagcaggt cagaactgag taggtctgat
     1501 cagctcactg gactgacaat ccaccccatg caccttccac agaatgccat ccgccacaac
     1561 ctgagcctgc acaagtgctt tgtgcgagtg gagagtgaga agggagcagt gtggaccgta
     1621 gatgaatttg agtttcgcaa gaagaggagc caacgcccca gcaagtgctc caacccctgc
     1681 cct
//
