LOCUS       XM_039099794            2473 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P3 (Foxp3), transcript
            variant X1, mRNA.
ACCESSION   XM_039099794
VERSION     XM_039099794.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099794.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2473
                     /gene="Foxp3"
                     /gene_synonym="RGD1562112"
                     /note="forkhead box P3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 2 ESTs, 6
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 4 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:317382"
                     /db_xref="RGD:1562112"
     CDS             245..1618
                     /gene="Foxp3"
                     /gene_synonym="RGD1562112"
                     /codon_start=1
                     /product="forkhead box protein P3 isoform X1"
                     /protein_id="XP_038955722.1"
                     /db_xref="GeneID:317382"
                     /db_xref="RGD:1562112"
                     /translation="MLTFLHHPWNACDFTPLLSFQPASDKNLMPNPRPAKPMAPSLAP
                     GPSPGGLPSWKTAPKGSELLGTRGPGGPFQGRDLRSGAHTSSSSLNPLPPSQLQLPTV
                     PLVMVAPSGARLGPSPHLQALLQDRPHFMHQLSTVDAHGHTPVLQVRPLDNPAMIGLP
                     PPTAATGVFSLKARPGLPPGINVASLEWVSREPALLCTFPRSGTPRKDSNLLAAPQGS
                     YPLLANGVCKWPGCEKAFEEPGEFLKHCQADHLLDEKGKAQCLLQREVVQSLEQQLEL
                     EKEKLGAMQAHLAGKMALTKAPPVASVDKSSCCLVATSTQGSVLPAWSSPREASDSLF
                     AVRRHLWGSHGNSTFPEFFHNMDYFKYHNMRPPFTYATLIRWAILEAPERQRTLNEIY
                     HWFTRMFAYFRNHPATWKNAIRHNLSLHKCFVRVESEKGAVWTVDEFEFRKKRSQRPS
                     KCSNPCP"
ORIGIN      
        1 aaccaactcc ccattgcccc gcatccatga caggactgtg tggtgtatgc aagcaagtga
       61 ggtgctggac atatgcgtgt gtgggatata tacatcaacc tgtgctcctg atatcaggga
      121 aggtagggta tgtgtatgta agacaggcca gaggtatagt cacggggccc tttgtggcat
      181 gtcccagcca acacctattc tgaccagagg ctggaaatgt tgaactatct tacaccatct
      241 gtaaatgttg actttcttac accatccctg gaatgcatgt gacttcactc cactgttgtc
      301 ctttcagcct gcctcagaca agaacctgat gcccaaccca aggccagcta agcctatggc
      361 tccttccttg gcccctggcc cgtccccagg aggcttgcca agctggaaga ctgcgcccaa
      421 gggctcagaa ctcctaggga ccaggggtcc tgggggaccc ttccaaggcc gggacctgcg
      481 aagtggggcc cacacctcct cttcttcctt gaaccccctg ccaccatcac agctgcagct
      541 gcctacagtg cccctagtca tggtggcacc ctctggggcc cgactaggcc cctcaccgca
      601 cctgcaggca cttctccagg acagaccaca ctttatgcat cagctctcca ctgtagacgc
      661 acatggccac acccctgtgc tacaagtgcg cccactggac aacccagcga tgatcggcct
      721 cccaccgcct actgctgcca ctggagtctt ctccctcaag gcccggcctg gcctgccacc
      781 tgggatcaat gtggccagtc tggaatgggt gtccagggag ccggctctac tctgcacctt
      841 cccacgctca ggtacaccca ggaaagacag caaccttctg gctgcaccac aaggatccta
      901 cccactgctg gcaaacggag tctgcaagtg gccgggttgt gagaaggcct tcgaggagcc
      961 gggagagttt ctcaagcact gccaagcaga tcacctcttg gatgagaagg gcaaggccca
     1021 gtgcctcctc cagagagaag tggtgcagtc tctggagcag cagctggagc tggaaaagga
     1081 gaagctggga gctatgcagg cccacctggc tgggaagatg gcattgacaa aagctccacc
     1141 tgtggcctca gtggacaaga gctcctgctg cctcgtagcc accagcaccc agggcagcgt
     1201 cctcccggcc tggtctagtc cccgggaagc ttcagacagc ttgtttgctg tgcggagaca
     1261 cctctgggga agccatggaa acagcacctt tccagagttc ttccacaaca tggactactt
     1321 caagtaccat aatatgcggc cccctttcac ctatgccacc ctcatccgat gggccatcct
     1381 ggaagctcca gagaggcaga ggacactcaa tgaaatctac cattggttca cacgcatgtt
     1441 cgcctacttc agaaaccacc ccgccacctg gaagaatgcc atccgccaca acctgagcct
     1501 gcacaagtgc tttgtgcgag tggagagtga gaagggagca gtgtggaccg tagatgaatt
     1561 tgagtttcgc aagaagagga gccaacgccc cagcaagtgc tccaacccct gcccttgacc
     1621 tcaaaaccaa gaaaacatgg acgggggcca aaacatgaga ctgaggctgt aggggcaagg
     1681 aggcaagtcc tggacatacc tatggagacc aggcagtgag gtttctgcca tcttgcctat
     1741 cagggcctcc actctctatc tagctgccct cctgagaggg gtgccaatct caacctagcc
     1801 cctagcccca acctaccccc aagatgagct ttccagccaa acagccctca caaccagcta
     1861 tacatatatc tgccttggcc actgccaagc agaaaaatga cagacacagt tcctaatact
     1921 gtcccttgga ctcaacccaa accctaaaac acgaagagcc tgccttcgca cattcatggg
     1981 ccctcaaagt tacaatcctg caattgcacg tgactgcaat cctactgact catagcccaa
     2041 cactcaccca caacgtctgc aaccacagac actatgacac atagcagggg tgtagatgca
     2101 gaccctcgta caggagcagc gctggaacct tcagaattag catcccagaa aaccacacag
     2161 gcataactga tcatacgtag cctctagtaa tgcccaaaaa atatcaagtc agacacagct
     2221 tgtcagaacg cacacgtgta catgtacaca catgcagccc ctccaccgta tctcctgagt
     2281 tccatgaata cacaccgact ttccaaaatg taccccatgt atcacttgcc actaacccca
     2341 gtcccctacc cccaagcccc aatccatgcc taagcgtggc ccacagaaga acttctcttt
     2401 tatttggaat ccaaggcccc tggtccccag tgcccatcca ataaactgtg gtcaagctgg
     2461 acaatcaccc tga
//
