LOCUS       XM_039107386            9127 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P1 (Foxp1), transcript
            variant X10, mRNA.
ACCESSION   XM_039107386
VERSION     XM_039107386.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9127
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9127
                     /gene="Foxp1"
                     /note="forkhead box P1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 68 ESTs, 9 long
                     SRA reads, 2 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
     CDS             975..3170
                     /gene="Foxp1"
                     /codon_start=1
                     /product="forkhead box protein P1 isoform X5"
                     /protein_id="XP_038963314.1"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
                     /translation="MMQESGSEAKSNGSTIQNGSSGGNHLLECGTLRDTRSNGEAPAV
                     DLGAADLAHVQQQQQQKNVNEDRSPFQTQGLKDILETGALQVARQLLLQQQQQQQQQQ
                     QQQQQQQQQQQQQQQQQQQQQQQQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQV
                     ITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQLQEFYKKQQEQLQLQLLQQQHAG
                     KQPKEQQQQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQG
                     MIPTELQQLWKEVTSAHTAEETTGSNHSSLDLTSTCVSSSAPSKTSLIMNPHASTNGQ
                     LSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDRST
                     AQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKSAS
                     EASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISSADIAQ
                     NQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNA
                     VRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQSGHAYCTPLN
                     AALQASMAENSIPLYTTASMGNPTLGSLASAIREELNGAMEHTNSNESDSSPGRSPMQ
                     AVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME"
ORIGIN      
        1 gctgcgctcg gaaactttga ttccttgtcc ccctccccac ctgttgtgag ctccgcctta
       61 gtccctggag actggcggtg acacacacgg gcgccaggga gctccgcgcc cagaaacaaa
      121 gtctcatgcc cccccacccc agtgtttgct tggaaattgc tgcctgcagc acccccattc
      181 ccgcgcagct cccgccccct gggagtctaa ggactaaata aacagttgta actccaaacc
      241 ttgcgcctgc caccgcagcc ctatcccacc cctttccccc ggtcctgccc ctcctttttt
      301 gttgttgcaa ctttgtaaga tcccgggaag gtgctgagac taaggctcaa gccgggctcc
      361 gggtttcccg atccctgcag ggatcccccg cggcgcatcc tcctaccctg tcccccccgg
      421 agctcggggt cctctccttc ctgctgcccc cctatctact ccggccccct ccgcctaatc
      481 acctcgtccc cttcgagccc ctcactacac aaccttcacg gaaggaagac ttgctgaggg
      541 tcgccccggt ctcttgtcga tcgcagaccc cgaaactttg ccccaagagg acggcgcgcg
      601 gcgggcgagg ggcagcggcg gcggcggcgg cggcgcggag aagcgtggag ctgccggcgc
      661 ctcctccccg gactccgtgg cgtcccagga gcttctgctg acgatcccgg tttccgaggg
      721 aaccctttcg gcaatgttga gggctgcgct cctttctctg ccgtgcggtc agccatgagc
      781 ggatgggtgt gatgcctgct agcataaagg gttcctcctg tgtgctgcag tccccctgcc
      841 agtgacccca ggctttttat ggctgtgaga ctcattaaaa gctcaggggt gagacttgac
      901 ctttggaggt gactataact gaagattgaa ttactgaagc caaaaaaaat aaataaataa
      961 aaggtttttg agtcatgatg caagaatctg ggtctgaggc aaaaagtaac ggatcaacca
     1021 tccagaacgg gtccagcggt ggcaaccact tactagagtg cgggacactt cgtgacactc
     1081 ggtccaacgg agaggcacca gcggtggacc tgggagcagc cgaccttgcc cacgtccagc
     1141 agcagcagca gcagaaaaat gtaaatgaag accggtcccc tttccagact caaggcctga
     1201 aggacatcct tgagacaggg gccctgcagg tggcaaggca gctcctcctt caacagcagc
     1261 aacagcagca gcagcagcag caacaacaac agcagcagca gcagcaacag cagcagcagc
     1321 agcagcagca gcagcagcaa cagcagcaac agcaacaaca gcagcaagtt agtggattaa
     1381 agtctccgaa gaggaatgac aagcaaccag ctcttcaggt tcccgtgtca gtggctatga
     1441 tgacacctca ggttatcact cctcaacaaa tgcagcagat cctccagcag caagtgctga
     1501 gcccacagca gctccaggtt ctcctccagc aacagcaggc cctcatgctt caacagcagc
     1561 ttcaagaatt ttacaagaaa caacaggaac agttgcagct tcaactcctc caacagcaac
     1621 atgctggaaa acagccgaaa gagcagcagc agcaggtggc tacccagcag ttggctttcc
     1681 agcagcagct tcttcagatg cagcagctgc agcagcagca cctcctgtct ctccagcggc
     1741 aaggccttct aacaattcag cccgggcagc ctgcccttcc cctccaacct cttgctcaag
     1801 gcatgattcc aacggaactg cagcagctct ggaaagaagt gacaagtgcc cacactgcag
     1861 aggaaaccac aggcagcaac cacagcagcc tagacctgac cagcacatgc gtctcgtcct
     1921 ccgcaccttc caagacctcc ctaatcatga acccacacgc ctctaccaat ggacagctct
     1981 cggtccacac ccccaaaagg gaaagcttgt cccacgagga gcacccccac agccaccctc
     2041 tctacggaca tggtgtctgc aagtggccag gctgtgaagc agtttgtgac gacttcccgg
     2101 cctttctaaa acatctcaac agtgagcatg cgctggacga tagaagcaca gctcaatgta
     2161 gagtacaaat gcaggttgta cagcagttag agctacagct tgcaaaagac aaagagcgcc
     2221 tgcaagccat gatgacccac ctgcatgtga agtctacaga acccaaagct gcccctcagc
     2281 ccctgaatct ggtatcaagt gtcaccctct ccaagtccgc ctcagaggct tctccacaga
     2341 gcttacctca tactccaaca accccaaccg cccccctgac tcccgtcacc caaggcccct
     2401 ctgtcatcac caccaccagc atgcacacgg tgggacctat ccgcaggcgg tactcagaca
     2461 aatacaacgt gcccatttct tcagcagata ttgcgcagaa ccaagaattt tataagaacg
     2521 cggaagttag accaccattt acatatgcat ctttaattag gcaggccatt cttgaatctc
     2581 cagaaaagca gctaacacta aacgaaatct ataactggtt cacacgaatg tttgcttact
     2641 tccgacgcaa tgcagccacg tggaagaatg cagtgcgtca taatcttagt ctccacaagt
     2701 gttttgtgcg agtagagaac gttaaagggg cagtatggac agtggatgaa gtagagttcc
     2761 aaaaacggag gccacaaaag atcagtggta acccttccct tattaaaaac atgcagagcg
     2821 gccacgccta ctgcacacct ctcaatgcag ctttacaggc ttccatggct gagaacagta
     2881 tacctctgta cactaccgcc tccatgggga accccacgct gggcagcctg gccagcgcca
     2941 tccgggagga gctgaacggg gccatggagc acaccaacag caacgagagt gacagcagtc
     3001 caggcagatc ccctatgcaa gctgtgcacc ccatacacgt caaggaggaa cccctcgacc
     3061 ccgaggaagc tgaagggcct ctgtccttag tgacaacagc caaccacagt ccagattttg
     3121 accacgacag agattacgaa gacgaacctg taaacgagga catggagtga acccttgggc
     3181 gggccgaccc ccgagaccga agattgggaa agaagcaaaa caaattaaaa aaaaataaaa
     3241 agaaagaaaa gcaaaaagaa aaaagaaaag aaaccacgtc aaaagttagc agtgaaagcg
     3301 tcctccgctt cttgtacagt ctggaggatt ttcactacat tttgacaact ctgaaatgtg
     3361 ttaactctta gtgccatcaa gaatcccatt tgggagtatt tttgattttt ctactttttg
     3421 ttgacaaaag ggatttgtac tctgtgcatt ggatggacct gtttggtact tgggattttc
     3481 ctctttgagt caacatcagt gttgtaaatt cgataaacgg attcactttt agcagcagac
     3541 tttgaactgc agtttcgccc ggccgacgcc ggacaccgag gacacccgac tgagctcacg
     3601 tacctgcact gcagaccaag ccttcgcccg aattcgagac tccagtggac gacctatttg
     3661 cacagcactg catgttgatt tcactgcctt tactcacttt ggttggtttg tttttgtttt
     3721 ccgcttccag ttgggatggg ggaaggcctt tgtgtgtgta ttggggggag gggttaaaaa
     3781 taattatccc aaacttttta atgtattgct tttttttttc ttttcttttt tttttttgct
     3841 tcttctttac cattttaagt tctgacctca ggcctccatt tgggcccagg gcctcttgga
     3901 ggcttcgtgt tttctgtacc ttgtgatgaa tgttaatagg cgtttttatt atacaaagct
     3961 gaatgccgtt ttcctcctcg tctgtagttc tctggcactc attccatttt tcctatagac
     4021 atcgccatgt ttctctcaag ttcaaaacaa aacaaaacaa aacattccgt ttcggtcttt
     4081 ttccataaaa aaagatcccg aaggctgcac cttacacctg aaggtccccc caacacgggg
     4141 acatgacgtc ctgccagaac gagaatgaca gaaaagaaaa gagagaaacg cacgcgcgca
     4201 cacactgtag ggacatagca gattcatttc acaaaagcag tattgggggt gggacgggga
     4261 ctgttggaga tttttctttt tagtttttca tagcacccgc cattgtgagt aaccgctacc
     4321 acgtcaggaa acacaggcac gaaagaaaac agaagagagt aagcaagtcc ttaatactta
     4381 gactgtcgtg atggccgtgg aaggtttccc ctcctatcat caagtgacca ggactgcagg
     4441 ccttgggtta cccttaccag cataggttgc tttgtttgca aaaaaatgac caaaaagcca
     4501 gcttcgctaa gcaacgtaca ctcagcatgg tgacagggct gagtctgctt cggttcagac
     4561 ctgctcggtg gcattcatct gttttaatgc aaatgaggct tcacattgaa cttgttatgg
     4621 gagttaatga ggactgggct cagcagacgc taatgtgtca gtttccagtg tgctaagtcg
     4681 gtactgcagc tcggtctgca atgtgagcat cacagccacc accccagtag cacagacttc
     4741 acggaagagg acaccaggta gacggaggct cccaggacca gggcccacag aacgtgatgg
     4801 ctctaggtca gtatggccct cagcccttcg aacccctccg caccgtctgc gcccacttcc
     4861 ctgacgttta tttatctggg gacgtagctt ttgtttgggt ttagtttgag agcctttcgg
     4921 agcttaattt atatactttg taccttttat ttctaaaatt accaaagata ttacgcaaag
     4981 gtaaattatt ttcttttatg ctttatctga tgaagccaaa tatcctctat tgttgatcaa
     5041 aggaggcgaa aggattcaga ggcaaatgtg aggtccgggc tattgctaac ctgagggaaa
     5101 tgactaccca tcagcagagt tcacttagca gactacgtag gcaatggaac caaaggtttt
     5161 tccttttttt ttttctaggt tatttttttc tttctttcct tcttttctct atctatagag
     5221 agaccaaaac taactcctgg aaggagaaaa atacggggct actgcagaga aaagaaacca
     5281 agacaatagt attatagctc ctacggaaag aatgggctat catctcaaag agagagaatt
     5341 gaatgtatga tgctgaaact tagaatataa tggaggagac acttaggatg aattcagaga
     5401 gaacagagaa gtgtctggct gcatgagacc acttctagaa taaagagaat tttagaacgt
     5461 tcagatgcca cttttgttta agggctgtgc tctgatcgct gcgttaattt tggttttatc
     5521 ttggctttta tcctctggtt cccttctggt tttttttttt tttttttttt tgttgttgtt
     5581 tttccccccc tctcaaatta tgatttggtc agtgtttttc atttccacac acaagaaaaa
     5641 ggtggcattc ccatccactc gtaagcttag actagaacat ctttggcaat tactcctgaa
     5701 ggtttgctgt gcttttatag aggggcagtc tgtggttatt catgccccgc cctgtccccc
     5761 ctcttttcca ggcagcttca tgatgtgcag gcagtagcca ggcagggtca ttggaagggg
     5821 gccctgtgct tctaaactga gtggttgctg gttagatatt caaaagagga taaaaatctg
     5881 gtagattagt tcattctcag catgtgtagc tagacacgag taaagatagc gcatgaggac
     5941 tgttagtacg catacctcag ttcaaacctt tagggaatga gtaaaaaaaa aattaaaaat
     6001 atacctttca ctcagtcaca cttagtcgta tgtcttgcat gcttagtcta aagactgtag
     6061 cagagaataa ataaaaaaga agaattaggt tttatgtatc tttgcaggtg tcatagcctc
     6121 gaagaagaac caactgaaaa aaaaaaaaaa agaaaaagtc tcaggcttta cagcaagcaa
     6181 tcttcactct gacttttaca gttctgattc tgtccctcgg ggggattgtg gtcgcttctc
     6241 tagaatgggg ttgcttcggt tgtacatata tcccgatgtg tctgtgtggg tctttgtctt
     6301 tttgcggggg agggctgagg ggaggggttt ttttttgttt tgttttgttt taattatttt
     6361 attttttagg tattgttcct aaaaaggaat aaatgcatac acctgtttgt caaaacatct
     6421 ttgctttttg tgcaactgca ttttattaat gatacttttt tttaaagaaa aaaaaggaaa
     6481 agaaaatagt atctttgggg gcaaatctac tgtatgtaat gggtttgcag tcagtgctga
     6541 acatgtgctt tatttccctg cccctgattt acaaacgctg gatgacatgt tgatatatgg
     6601 gaagaaggaa aaaactccac acttctctct ccctctctct ctctctccct ccctccttcc
     6661 ctccctcccc caaccccctt gcttttaaat tgtaacatag ttgacataat ttgtttcttt
     6721 tcctaccctc attatttgga acattttgta ctttgtacag gttcgtggag tggggagaga
     6781 gagagagaga gagagagaga gagagagagt gagtgagtgt gggtgttact ccgtttttga
     6841 tacattccta tttcttgtgt ttatcacacc actgcctcct tgactatctt aaacaagttc
     6901 ctaagtttga aaagagaaaa aaaaatgttt aaaaaaaatg ttctctcttg ccgcagtcaa
     6961 tatttttgca tgatgaaatt ccaggctcac actttaaaag ttttatcagt aaagtagtga
     7021 ttaataatgg gaagtgttgc aaatatggaa ctctttgtat aaaagttttt ttacaaggtc
     7081 ccaaggtgta aagacaattt tgttactctt ttctttcttt tcttagcaaa tctaagcaaa
     7141 catgagggag attggaccta tgtgtcagac acagtcatga tgaggaccca cctccatgtt
     7201 cttagggtct atccatgtga gaaggcttag ggccatcaaa gggtgaactg tctaggcttg
     7261 cgtgcatggc gacccagctg ccagtccctt ccccacatca gaagatagtt gacttcatat
     7321 tcttagcatc ttcagccata ataaagcctt ggtttaaaag aaaagaaaag aaaagaaaag
     7381 aaaataatag agccaaaaac acaatataaa tcactagctc ctttattttc ttcagttaca
     7441 acattgaatc gaaaagtctc tcctcctttc cacattctag ctgagctctc tgtctcccag
     7501 ggcaaaaagc aaactctgct aattaaatct tttccgtacc tgttggtcag tgccataccc
     7561 tcctgacagt ctggaagtgg tttacaactc ggttttactc tattatcctg agaagcaaat
     7621 ggacaattct aatggcgtct tgtgggtcca gtgtaactca aagcggtccc tgctacccag
     7681 gagcctgggt agaggtggtg cggtctgggt tgtgagtgtg gtgctctctg tatctgtgat
     7741 gccactaaca gggattgttt tgttttgttt tgataaggca taaaagaatc tcattccttg
     7801 acatcaactg taattccatc attccatgtc tgtggataca gacaataaaa aaaaaaaaag
     7861 ttgtgtagtc agtagtaatt actgacatga gcgcattctc aaatgcaata aaaatgctgg
     7921 ttgttcacac tggtagacaa agttgccaca gactaagttt tttccccact tctgacctct
     7981 acatcagtca cacaccccaa gctgcctctt agcagctact ccaagccagg ttcccaatca
     8041 gccctcactg gcatcggcga gcaggctaag ggaagggtcc cgaggaaagg cagacgggtt
     8101 agttccttca gagggaacat actgtctttc ttcaccaagt gtgataaaga ggaaagaaaa
     8161 aagtttaata actaacacgg agagagccaa actaaaattt cagaggaaag caatttcatg
     8221 aataattcat tgacatttca catctgcaag atcagtcatc caaataaaac gctaacgtca
     8281 aaaccatgca ccatctacag cattctcatc aagaaagctc tttgcatata aggataaatg
     8341 cttagattag aacaaatgat tacataaaaa tgctctatca aaagtgtgct aggctaacca
     8401 cacagaagac agcagatctg gatggagaac cacaggtccc aggaagccac ctttagagat
     8461 tatttttaat tctgtacttt tagaaaaatg tgctttttct cttttgctta attacatcac
     8521 atgtattcta agtactaatg aacttaactg tgtttttcaa cacagttgta acattgtaaa
     8581 gcttcatgtg gtggtgcatg cctttaagcc tagcacttgg gaagcagagg caggctcagt
     8641 tctgtgagtt caaggccagc ctggtctaca tattgagttc agccaagtga tatagcccgt
     8701 gcctcaaaac aaccaaataa accttaaagt agccgaacca cggcatctta accactgtga
     8761 ctgtaattcc aagcacatct gtaaagcttt cagatgacaa atgtccttac aaacatcttt
     8821 cccaggacag catacctccc cattttgggc aaacattaga agggtgtctc ctgcattgtt
     8881 tatgaatcta cattttacat tttctacaac agtacggttt tgcttggggt ggttttggtt
     8941 tcagtttgtt ttcattttga gacagggtct caccatgtag ccctggttgg tttagaattc
     9001 tcctaggaaa atcaggcagc ctaccttatt aaaattgcag gggggttggg gatttagctc
     9061 agcggtagag cgcttgccta gaaagctcaa ggccctgggt tcggtcccca gctccaaaaa
     9121 aaaaaaa
//
