LOCUS       XM_039107382            9791 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P1 (Foxp1), transcript
            variant X6, mRNA.
ACCESSION   XM_039107382
VERSION     XM_039107382.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107382.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9791
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9791
                     /gene="Foxp1"
                     /note="forkhead box P1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 mRNAs, 68 ESTs, 9 long
                     SRA reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
     CDS             1633..3834
                     /gene="Foxp1"
                     /codon_start=1
                     /product="forkhead box protein P1 isoform X1"
                     /protein_id="XP_038963310.1"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
                     /translation="MMQESGSEAKSNGSTIQNGSSGGNHLLECGTLRDTRSNGEAPAV
                     DLGAADLAHVQQQQQQKNVNEDRSPFQTQGLKDILETGALQVARQLLLQQQQQQQQQQ
                     QQQQQQQQQQQQQQQQQQQQQQQQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQV
                     ITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHA
                     GKQPKEQQQQQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLA
                     QGMIPTELQQLWKEVTSAHTAEETTGSNHSSLDLTSTCVSSSAPSKTSLIMNPHASTN
                     GQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDR
                     STAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKS
                     ASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISSADI
                     AQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWK
                     NAVRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQSGHAYCTP
                     LNAALQASMAENSIPLYTTASMGNPTLGSLASAIREELNGAMEHTNSNESDSSPGRSP
                     MQAVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME"
ORIGIN      
        1 taatgctttc actgtagatt gaatccctaa atatagcatt tccgataagg tgtgataatg
       61 tctttctaac ttagtcagct agctatgtat ggcagtttac atgggaagtg aatctttgaa
      121 gattaaacat ttcttcttaa tggacatagg gaattaaatc actctggctt ttgcaaagat
      181 acaatttttc cccctaatgc taacctcaca aggaactcct gggcagagta aggtacccat
      241 cagctgacta tttataacat ctgttgtttc tcaaggacac tatcttcatg tggcatagtt
      301 tgaattttgc agagtccttg ggggctctgc ccttgtatct gttggcccag tgggtttaca
      361 gaagctttgc atatggaggg agaaagcatc agggcttccc ttatggaaga aatacccaga
      421 gccagggtct ctgtttgacc catgtgtttc attgattaaa gatgaaccca ggagatgagt
      481 gcagagctac tgaagcatgg aaacatcatg ggctttttca aagccaagtc tagatccagc
      541 cctgagtatt ttaccccgta gcccatgaca tatttttatc tgccaaccat gaaataaagg
      601 ggatttgcca aaggttgacc tgtctctttt ggggtgactt gtgtttcctg gaggaggtgc
      661 atgtccttga gtgttttctt tcctcaaagt ttcatgtaat gcttccagga aggagttaag
      721 caagtgctac ttgctttatc ctggcttcca tgatgagtaa tggcggttgg taacagcaaa
      781 tcgttgttta tccacaaaca tggcattgtg caaacaagca ggcccacggg tctccaacca
      841 gttggatttc ctggtggtca gcagctgatc cgtgtaactt acaaccttcc tggctctcta
      901 aatgtcagaa gaatgacggc ttgtgtatct tgcctccttc ccagctgttt accctgcaat
      961 gcatttgcct ccgtacctcg accttgattc tagcgaagct gcccctttct cctctccagt
     1021 tctgtttgct ttcccctgcc cctggtgtca cctatgaaat ctgttggtta ttccacctgg
     1081 ttaatgttaa attgctctgg taagatgatg tgtttgttca taaacacaaa tgctgggccc
     1141 cctgtttact gtacccatgg cagcaatcat tattaaacaa atatcgctct gtttgcgggt
     1201 ggaagcagca gtttatcctg taaggtctgt ttaaaaagaa gaagaagaaa aaaaaaaaaa
     1261 acacaccgcg tacaaataca cacatacaag acttaaatgc tagaatttcg ataaagaaag
     1321 aaaaggggag cctgtccctg gaatgcggtt gaaagcgccc taggtttgct tttcttatct
     1381 cttgcttggg tgaaggggcc ggagagatta gcgacttgtt tggcttttct aagagatttc
     1441 cttagtgtaa tgatatctat gcagttgttt gctttcttca gagaggggca agatctcctg
     1501 aaaggccacc agctcagtcg ttgagcatca gatggctagg caattctttg tggaacaaac
     1561 aaggacctag aaagtacagg gaggaaaggt ctggactatg aacgaaggga gacgctggaa
     1621 ggtttttgag tcatgatgca agaatctggg tctgaggcaa aaagtaacgg atcaaccatc
     1681 cagaacgggt ccagcggtgg caaccactta ctagagtgcg ggacacttcg tgacactcgg
     1741 tccaacggag aggcaccagc ggtggacctg ggagcagccg accttgccca cgtccagcag
     1801 cagcagcagc agaaaaatgt aaatgaagac cggtcccctt tccagactca aggcctgaag
     1861 gacatccttg agacaggggc cctgcaggtg gcaaggcagc tcctccttca acagcagcaa
     1921 cagcagcagc agcagcagca acaacaacag cagcagcagc agcaacagca gcagcagcag
     1981 cagcagcagc agcagcaaca gcagcaacag caacaacagc agcaagttag tggattaaag
     2041 tctccgaaga ggaatgacaa gcaaccagct cttcaggttc ccgtgtcagt ggctatgatg
     2101 acacctcagg ttatcactcc tcaacaaatg cagcagatcc tccagcagca agtgctgagc
     2161 ccacagcagc tccaggttct cctccagcaa cagcaggccc tcatgcttca acagcagcag
     2221 cttcaagaat tttacaagaa acaacaggaa cagttgcagc ttcaactcct ccaacagcaa
     2281 catgctggaa aacagccgaa agagcagcag cagcagcagg tggctaccca gcagttggct
     2341 ttccagcagc agcttcttca gatgcagcag ctgcagcagc agcacctcct gtctctccag
     2401 cggcaaggcc ttctaacaat tcagcccggg cagcctgccc ttcccctcca acctcttgct
     2461 caaggcatga ttccaacgga actgcagcag ctctggaaag aagtgacaag tgcccacact
     2521 gcagaggaaa ccacaggcag caaccacagc agcctagacc tgaccagcac atgcgtctcg
     2581 tcctccgcac cttccaagac ctccctaatc atgaacccac acgcctctac caatggacag
     2641 ctctcggtcc acacccccaa aagggaaagc ttgtcccacg aggagcaccc ccacagccac
     2701 cctctctacg gacatggtgt ctgcaagtgg ccaggctgtg aagcagtttg tgacgacttc
     2761 ccggcctttc taaaacatct caacagtgag catgcgctgg acgatagaag cacagctcaa
     2821 tgtagagtac aaatgcaggt tgtacagcag ttagagctac agcttgcaaa agacaaagag
     2881 cgcctgcaag ccatgatgac ccacctgcat gtgaagtcta cagaacccaa agctgcccct
     2941 cagcccctga atctggtatc aagtgtcacc ctctccaagt ccgcctcaga ggcttctcca
     3001 cagagcttac ctcatactcc aacaacccca accgcccccc tgactcccgt cacccaaggc
     3061 ccctctgtca tcaccaccac cagcatgcac acggtgggac ctatccgcag gcggtactca
     3121 gacaaataca acgtgcccat ttcttcagca gatattgcgc agaaccaaga attttataag
     3181 aacgcggaag ttagaccacc atttacatat gcatctttaa ttaggcaggc cattcttgaa
     3241 tctccagaaa agcagctaac actaaacgaa atctataact ggttcacacg aatgtttgct
     3301 tacttccgac gcaatgcagc cacgtggaag aatgcagtgc gtcataatct tagtctccac
     3361 aagtgttttg tgcgagtaga gaacgttaaa ggggcagtat ggacagtgga tgaagtagag
     3421 ttccaaaaac ggaggccaca aaagatcagt ggtaaccctt cccttattaa aaacatgcag
     3481 agcggccacg cctactgcac acctctcaat gcagctttac aggcttccat ggctgagaac
     3541 agtatacctc tgtacactac cgcctccatg gggaacccca cgctgggcag cctggccagc
     3601 gccatccggg aggagctgaa cggggccatg gagcacacca acagcaacga gagtgacagc
     3661 agtccaggca gatcccctat gcaagctgtg caccccatac acgtcaagga ggaacccctc
     3721 gaccccgagg aagctgaagg gcctctgtcc ttagtgacaa cagccaacca cagtccagat
     3781 tttgaccacg acagagatta cgaagacgaa cctgtaaacg aggacatgga gtgaaccctt
     3841 gggcgggccg acccccgaga ccgaagattg ggaaagaagc aaaacaaatt aaaaaaaaat
     3901 aaaaagaaag aaaagcaaaa agaaaaaaga aaagaaacca cgtcaaaagt tagcagtgaa
     3961 agcgtcctcc gcttcttgta cagtctggag gattttcact acattttgac aactctgaaa
     4021 tgtgttaact cttagtgcca tcaagaatcc catttgggag tatttttgat ttttctactt
     4081 tttgttgaca aaagggattt gtactctgtg cattggatgg acctgtttgg tacttgggat
     4141 tttcctcttt gagtcaacat cagtgttgta aattcgataa acggattcac ttttagcagc
     4201 agactttgaa ctgcagtttc gcccggccga cgccggacac cgaggacacc cgactgagct
     4261 cacgtacctg cactgcagac caagccttcg cccgaattcg agactccagt ggacgaccta
     4321 tttgcacagc actgcatgtt gatttcactg cctttactca ctttggttgg tttgtttttg
     4381 ttttccgctt ccagttggga tgggggaagg cctttgtgtg tgtattgggg ggaggggtta
     4441 aaaataatta tcccaaactt tttaatgtat tgcttttttt tttcttttct tttttttttt
     4501 tgcttcttct ttaccatttt aagttctgac ctcaggcctc catttgggcc cagggcctct
     4561 tggaggcttc gtgttttctg taccttgtga tgaatgttaa taggcgtttt tattatacaa
     4621 agctgaatgc cgttttcctc ctcgtctgta gttctctggc actcattcca tttttcctat
     4681 agacatcgcc atgtttctct caagttcaaa acaaaacaaa acaaaacatt ccgtttcggt
     4741 ctttttccat aaaaaaagat cccgaaggct gcaccttaca cctgaaggtc cccccaacac
     4801 ggggacatga cgtcctgcca gaacgagaat gacagaaaag aaaagagaga aacgcacgcg
     4861 cgcacacact gtagggacat agcagattca tttcacaaaa gcagtattgg gggtgggacg
     4921 gggactgttg gagatttttc tttttagttt ttcatagcac ccgccattgt gagtaaccgc
     4981 taccacgtca ggaaacacag gcacgaaaga aaacagaaga gagtaagcaa gtccttaata
     5041 cttagactgt cgtgatggcc gtggaaggtt tcccctccta tcatcaagtg accaggactg
     5101 caggccttgg gttaccctta ccagcatagg ttgctttgtt tgcaaaaaaa tgaccaaaaa
     5161 gccagcttcg ctaagcaacg tacactcagc atggtgacag ggctgagtct gcttcggttc
     5221 agacctgctc ggtggcattc atctgtttta atgcaaatga ggcttcacat tgaacttgtt
     5281 atgggagtta atgaggactg ggctcagcag acgctaatgt gtcagtttcc agtgtgctaa
     5341 gtcggtactg cagctcggtc tgcaatgtga gcatcacagc caccacccca gtagcacaga
     5401 cttcacggaa gaggacacca ggtagacgga ggctcccagg accagggccc acagaacgtg
     5461 atggctctag gtcagtatgg ccctcagccc ttcgaacccc tccgcaccgt ctgcgcccac
     5521 ttccctgacg tttatttatc tggggacgta gcttttgttt gggtttagtt tgagagcctt
     5581 tcggagctta atttatatac tttgtacctt ttatttctaa aattaccaaa gatattacgc
     5641 aaaggtaaat tattttcttt tatgctttat ctgatgaagc caaatatcct ctattgttga
     5701 tcaaaggagg cgaaaggatt cagaggcaaa tgtgaggtcc gggctattgc taacctgagg
     5761 gaaatgacta cccatcagca gagttcactt agcagactac gtaggcaatg gaaccaaagg
     5821 tttttccttt ttttttttct aggttatttt tttctttctt tccttctttt ctctatctat
     5881 agagagacca aaactaactc ctggaaggag aaaaatacgg ggctactgca gagaaaagaa
     5941 accaagacaa tagtattata gctcctacgg aaagaatggg ctatcatctc aaagagagag
     6001 aattgaatgt atgatgctga aacttagaat ataatggagg agacacttag gatgaattca
     6061 gagagaacag agaagtgtct ggctgcatga gaccacttct agaataaaga gaattttaga
     6121 acgttcagat gccacttttg tttaagggct gtgctctgat cgctgcgtta attttggttt
     6181 tatcttggct tttatcctct ggttcccttc tggttttttt tttttttttt tttttgttgt
     6241 tgtttttccc cccctctcaa attatgattt ggtcagtgtt tttcatttcc acacacaaga
     6301 aaaaggtggc attcccatcc actcgtaagc ttagactaga acatctttgg caattactcc
     6361 tgaaggtttg ctgtgctttt atagaggggc agtctgtggt tattcatgcc ccgccctgtc
     6421 ccccctcttt tccaggcagc ttcatgatgt gcaggcagta gccaggcagg gtcattggaa
     6481 gggggccctg tgcttctaaa ctgagtggtt gctggttaga tattcaaaag aggataaaaa
     6541 tctggtagat tagttcattc tcagcatgtg tagctagaca cgagtaaaga tagcgcatga
     6601 ggactgttag tacgcatacc tcagttcaaa cctttaggga atgagtaaaa aaaaaattaa
     6661 aaatatacct ttcactcagt cacacttagt cgtatgtctt gcatgcttag tctaaagact
     6721 gtagcagaga ataaataaaa aagaagaatt aggttttatg tatctttgca ggtgtcatag
     6781 cctcgaagaa gaaccaactg aaaaaaaaaa aaaaagaaaa agtctcaggc tttacagcaa
     6841 gcaatcttca ctctgacttt tacagttctg attctgtccc tcggggggat tgtggtcgct
     6901 tctctagaat ggggttgctt cggttgtaca tatatcccga tgtgtctgtg tgggtctttg
     6961 tctttttgcg ggggagggct gaggggaggg gttttttttt gttttgtttt gttttaatta
     7021 ttttattttt taggtattgt tcctaaaaag gaataaatgc atacacctgt ttgtcaaaac
     7081 atctttgctt tttgtgcaac tgcattttat taatgatact tttttttaaa gaaaaaaaag
     7141 gaaaagaaaa tagtatcttt gggggcaaat ctactgtatg taatgggttt gcagtcagtg
     7201 ctgaacatgt gctttatttc cctgcccctg atttacaaac gctggatgac atgttgatat
     7261 atgggaagaa ggaaaaaact ccacacttct ctctccctct ctctctctct ccctccctcc
     7321 ttccctccct cccccaaccc ccttgctttt aaattgtaac atagttgaca taatttgttt
     7381 cttttcctac cctcattatt tggaacattt tgtactttgt acaggttcgt ggagtgggga
     7441 gagagagaga gagagagaga gagagagaga gagtgagtga gtgtgggtgt tactccgttt
     7501 ttgatacatt cctatttctt gtgtttatca caccactgcc tccttgacta tcttaaacaa
     7561 gttcctaagt ttgaaaagag aaaaaaaaat gtttaaaaaa aatgttctct cttgccgcag
     7621 tcaatatttt tgcatgatga aattccaggc tcacacttta aaagttttat cagtaaagta
     7681 gtgattaata atgggaagtg ttgcaaatat ggaactcttt gtataaaagt ttttttacaa
     7741 ggtcccaagg tgtaaagaca attttgttac tcttttcttt cttttcttag caaatctaag
     7801 caaacatgag ggagattgga cctatgtgtc agacacagtc atgatgagga cccacctcca
     7861 tgttcttagg gtctatccat gtgagaaggc ttagggccat caaagggtga actgtctagg
     7921 cttgcgtgca tggcgaccca gctgccagtc ccttccccac atcagaagat agttgacttc
     7981 atattcttag catcttcagc cataataaag ccttggttta aaagaaaaga aaagaaaaga
     8041 aaagaaaata atagagccaa aaacacaata taaatcacta gctcctttat tttcttcagt
     8101 tacaacattg aatcgaaaag tctctcctcc tttccacatt ctagctgagc tctctgtctc
     8161 ccagggcaaa aagcaaactc tgctaattaa atcttttccg tacctgttgg tcagtgccat
     8221 accctcctga cagtctggaa gtggtttaca actcggtttt actctattat cctgagaagc
     8281 aaatggacaa ttctaatggc gtcttgtggg tccagtgtaa ctcaaagcgg tccctgctac
     8341 ccaggagcct gggtagaggt ggtgcggtct gggttgtgag tgtggtgctc tctgtatctg
     8401 tgatgccact aacagggatt gttttgtttt gttttgataa ggcataaaag aatctcattc
     8461 cttgacatca actgtaattc catcattcca tgtctgtgga tacagacaat aaaaaaaaaa
     8521 aaagttgtgt agtcagtagt aattactgac atgagcgcat tctcaaatgc aataaaaatg
     8581 ctggttgttc acactggtag acaaagttgc cacagactaa gttttttccc cacttctgac
     8641 ctctacatca gtcacacacc ccaagctgcc tcttagcagc tactccaagc caggttccca
     8701 atcagccctc actggcatcg gcgagcaggc taagggaagg gtcccgagga aaggcagacg
     8761 ggttagttcc ttcagaggga acatactgtc tttcttcacc aagtgtgata aagaggaaag
     8821 aaaaaagttt aataactaac acggagagag ccaaactaaa atttcagagg aaagcaattt
     8881 catgaataat tcattgacat ttcacatctg caagatcagt catccaaata aaacgctaac
     8941 gtcaaaacca tgcaccatct acagcattct catcaagaaa gctctttgca tataaggata
     9001 aatgcttaga ttagaacaaa tgattacata aaaatgctct atcaaaagtg tgctaggcta
     9061 accacacaga agacagcaga tctggatgga gaaccacagg tcccaggaag ccacctttag
     9121 agattatttt taattctgta cttttagaaa aatgtgcttt ttctcttttg cttaattaca
     9181 tcacatgtat tctaagtact aatgaactta actgtgtttt tcaacacagt tgtaacattg
     9241 taaagcttca tgtggtggtg catgccttta agcctagcac ttgggaagca gaggcaggct
     9301 cagttctgtg agttcaaggc cagcctggtc tacatattga gttcagccaa gtgatatagc
     9361 ccgtgcctca aaacaaccaa ataaacctta aagtagccga accacggcat cttaaccact
     9421 gtgactgtaa ttccaagcac atctgtaaag ctttcagatg acaaatgtcc ttacaaacat
     9481 ctttcccagg acagcatacc tccccatttt gggcaaacat tagaagggtg tctcctgcat
     9541 tgtttatgaa tctacatttt acattttcta caacagtacg gttttgcttg gggtggtttt
     9601 ggtttcagtt tgttttcatt ttgagacagg gtctcaccat gtagccctgg ttggtttaga
     9661 attctcctag gaaaatcagg cagcctacct tattaaaatt gcaggggggt tggggattta
     9721 gctcagcggt agagcgcttg cctagaaagc tcaaggccct gggttcggtc cccagctcca
     9781 aaaaaaaaaa a
//
