LOCUS       XM_039107378            9208 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P1 (Foxp1), transcript
            variant X2, mRNA.
ACCESSION   XM_039107378
VERSION     XM_039107378.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107378.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9208
                     /gene="Foxp1"
                     /note="forkhead box P1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 68 ESTs, 9 long
                     SRA reads, 4 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 1 sample
                     with support for all annotated introns"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
     CDS             1050..3251
                     /gene="Foxp1"
                     /codon_start=1
                     /product="forkhead box protein P1 isoform X1"
                     /protein_id="XP_038963306.1"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
                     /translation="MMQESGSEAKSNGSTIQNGSSGGNHLLECGTLRDTRSNGEAPAV
                     DLGAADLAHVQQQQQQKNVNEDRSPFQTQGLKDILETGALQVARQLLLQQQQQQQQQQ
                     QQQQQQQQQQQQQQQQQQQQQQQQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQV
                     ITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQEFYKKQQEQLQLQLLQQQHA
                     GKQPKEQQQQQVATQQLAFQQQLLQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLA
                     QGMIPTELQQLWKEVTSAHTAEETTGSNHSSLDLTSTCVSSSAPSKTSLIMNPHASTN
                     GQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDR
                     STAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKS
                     ASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTVGPIRRRYSDKYNVPISSADI
                     AQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWK
                     NAVRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQKISGNPSLIKNMQSGHAYCTP
                     LNAALQASMAENSIPLYTTASMGNPTLGSLASAIREELNGAMEHTNSNESDSSPGRSP
                     MQAVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME"
ORIGIN      
        1 gctgcgctcg gaaactttga ttccttgtcc ccctccccac ctgttgtgag ctccgcctta
       61 gtccctggag actggcggtg acacacacgg gcgccaggga gctccgcgcc cagaaacaaa
      121 gtctcatgcc cccccacccc agtgtttgct tggaaattgc tgcctgcagc acccccattc
      181 ccgcgcagct cccgccccct gggagtctaa ggactaaata aacagttgta actccaaacc
      241 ttgcgcctgc caccgcagcc ctatcccacc cctttccccc ggtcctgccc ctcctttttt
      301 gttgttgcaa ctttgtaaga tcccgggaag gtgctgagac taaggctcaa gccgggctcc
      361 gggtttcccg atccctgcag ggatcccccg cggcgcatcc tcctaccctg tcccccccgg
      421 agctcggggt cctctccttc ctgctgcccc cctatctact ccggccccct ccgcctaatc
      481 acctcgtccc cttcgagccc ctcactacac aaccttcacg gaaggaagac ttgctgaggg
      541 tcgccccggt ctcttgtcga tcgcagaccc cgaaactttg ccccaagagg acggcgcgcg
      601 gcgggcgagg ggcagcggcg gcggcggcgg cggcgcggag aagcgtggag ctgccggcgc
      661 ctcctccccg gactccgtgg cgtcccagga gcttctgctg acgatcccgg tttccgaggg
      721 aaccctttcg gcaatgttga gggctgcgct cctttctctg ccgtgcggtc agccatgagc
      781 ggatgggtgt gatgcctgct agcataaagg gttcctcctg tgtgctgcag tccccctgcc
      841 agtgacccca ggctttttat ggctgtgaga ctcattaaaa gctcaggtgc aggcacgagc
      901 gatctgtgtt cagttggaaa ccagcctcct ggtcttgctc ctgatcttcc ctcacacttg
      961 agggtgagac ttgacctttg gaggtgacta taactgaaga ttgaattact gaagccaaaa
     1021 aaaataaata aataaaaggt ttttgagtca tgatgcaaga atctgggtct gaggcaaaaa
     1081 gtaacggatc aaccatccag aacgggtcca gcggtggcaa ccacttacta gagtgcggga
     1141 cacttcgtga cactcggtcc aacggagagg caccagcggt ggacctggga gcagccgacc
     1201 ttgcccacgt ccagcagcag cagcagcaga aaaatgtaaa tgaagaccgg tcccctttcc
     1261 agactcaagg cctgaaggac atccttgaga caggggccct gcaggtggca aggcagctcc
     1321 tccttcaaca gcagcaacag cagcagcagc agcagcaaca acaacagcag cagcagcagc
     1381 aacagcagca gcagcagcag cagcagcagc agcaacagca gcaacagcaa caacagcagc
     1441 aagttagtgg attaaagtct ccgaagagga atgacaagca accagctctt caggttcccg
     1501 tgtcagtggc tatgatgaca cctcaggtta tcactcctca acaaatgcag cagatcctcc
     1561 agcagcaagt gctgagccca cagcagctcc aggttctcct ccagcaacag caggccctca
     1621 tgcttcaaca gcagcagctt caagaatttt acaagaaaca acaggaacag ttgcagcttc
     1681 aactcctcca acagcaacat gctggaaaac agccgaaaga gcagcagcag cagcaggtgg
     1741 ctacccagca gttggctttc cagcagcagc ttcttcagat gcagcagctg cagcagcagc
     1801 acctcctgtc tctccagcgg caaggccttc taacaattca gcccgggcag cctgcccttc
     1861 ccctccaacc tcttgctcaa ggcatgattc caacggaact gcagcagctc tggaaagaag
     1921 tgacaagtgc ccacactgca gaggaaacca caggcagcaa ccacagcagc ctagacctga
     1981 ccagcacatg cgtctcgtcc tccgcacctt ccaagacctc cctaatcatg aacccacacg
     2041 cctctaccaa tggacagctc tcggtccaca cccccaaaag ggaaagcttg tcccacgagg
     2101 agcaccccca cagccaccct ctctacggac atggtgtctg caagtggcca ggctgtgaag
     2161 cagtttgtga cgacttcccg gcctttctaa aacatctcaa cagtgagcat gcgctggacg
     2221 atagaagcac agctcaatgt agagtacaaa tgcaggttgt acagcagtta gagctacagc
     2281 ttgcaaaaga caaagagcgc ctgcaagcca tgatgaccca cctgcatgtg aagtctacag
     2341 aacccaaagc tgcccctcag cccctgaatc tggtatcaag tgtcaccctc tccaagtccg
     2401 cctcagaggc ttctccacag agcttacctc atactccaac aaccccaacc gcccccctga
     2461 ctcccgtcac ccaaggcccc tctgtcatca ccaccaccag catgcacacg gtgggaccta
     2521 tccgcaggcg gtactcagac aaatacaacg tgcccatttc ttcagcagat attgcgcaga
     2581 accaagaatt ttataagaac gcggaagtta gaccaccatt tacatatgca tctttaatta
     2641 ggcaggccat tcttgaatct ccagaaaagc agctaacact aaacgaaatc tataactggt
     2701 tcacacgaat gtttgcttac ttccgacgca atgcagccac gtggaagaat gcagtgcgtc
     2761 ataatcttag tctccacaag tgttttgtgc gagtagagaa cgttaaaggg gcagtatgga
     2821 cagtggatga agtagagttc caaaaacgga ggccacaaaa gatcagtggt aacccttccc
     2881 ttattaaaaa catgcagagc ggccacgcct actgcacacc tctcaatgca gctttacagg
     2941 cttccatggc tgagaacagt atacctctgt acactaccgc ctccatgggg aaccccacgc
     3001 tgggcagcct ggccagcgcc atccgggagg agctgaacgg ggccatggag cacaccaaca
     3061 gcaacgagag tgacagcagt ccaggcagat cccctatgca agctgtgcac cccatacacg
     3121 tcaaggagga acccctcgac cccgaggaag ctgaagggcc tctgtcctta gtgacaacag
     3181 ccaaccacag tccagatttt gaccacgaca gagattacga agacgaacct gtaaacgagg
     3241 acatggagtg aacccttggg cgggccgacc cccgagaccg aagattggga aagaagcaaa
     3301 acaaattaaa aaaaaataaa aagaaagaaa agcaaaaaga aaaaagaaaa gaaaccacgt
     3361 caaaagttag cagtgaaagc gtcctccgct tcttgtacag tctggaggat tttcactaca
     3421 ttttgacaac tctgaaatgt gttaactctt agtgccatca agaatcccat ttgggagtat
     3481 ttttgatttt tctacttttt gttgacaaaa gggatttgta ctctgtgcat tggatggacc
     3541 tgtttggtac ttgggatttt cctctttgag tcaacatcag tgttgtaaat tcgataaacg
     3601 gattcacttt tagcagcaga ctttgaactg cagtttcgcc cggccgacgc cggacaccga
     3661 ggacacccga ctgagctcac gtacctgcac tgcagaccaa gccttcgccc gaattcgaga
     3721 ctccagtgga cgacctattt gcacagcact gcatgttgat ttcactgcct ttactcactt
     3781 tggttggttt gtttttgttt tccgcttcca gttgggatgg gggaaggcct ttgtgtgtgt
     3841 attgggggga ggggttaaaa ataattatcc caaacttttt aatgtattgc tttttttttt
     3901 cttttctttt ttttttttgc ttcttcttta ccattttaag ttctgacctc aggcctccat
     3961 ttgggcccag ggcctcttgg aggcttcgtg ttttctgtac cttgtgatga atgttaatag
     4021 gcgtttttat tatacaaagc tgaatgccgt tttcctcctc gtctgtagtt ctctggcact
     4081 cattccattt ttcctataga catcgccatg tttctctcaa gttcaaaaca aaacaaaaca
     4141 aaacattccg tttcggtctt tttccataaa aaaagatccc gaaggctgca ccttacacct
     4201 gaaggtcccc ccaacacggg gacatgacgt cctgccagaa cgagaatgac agaaaagaaa
     4261 agagagaaac gcacgcgcgc acacactgta gggacatagc agattcattt cacaaaagca
     4321 gtattggggg tgggacgggg actgttggag atttttcttt ttagtttttc atagcacccg
     4381 ccattgtgag taaccgctac cacgtcagga aacacaggca cgaaagaaaa cagaagagag
     4441 taagcaagtc cttaatactt agactgtcgt gatggccgtg gaaggtttcc cctcctatca
     4501 tcaagtgacc aggactgcag gccttgggtt acccttacca gcataggttg ctttgtttgc
     4561 aaaaaaatga ccaaaaagcc agcttcgcta agcaacgtac actcagcatg gtgacagggc
     4621 tgagtctgct tcggttcaga cctgctcggt ggcattcatc tgttttaatg caaatgaggc
     4681 ttcacattga acttgttatg ggagttaatg aggactgggc tcagcagacg ctaatgtgtc
     4741 agtttccagt gtgctaagtc ggtactgcag ctcggtctgc aatgtgagca tcacagccac
     4801 caccccagta gcacagactt cacggaagag gacaccaggt agacggaggc tcccaggacc
     4861 agggcccaca gaacgtgatg gctctaggtc agtatggccc tcagcccttc gaacccctcc
     4921 gcaccgtctg cgcccacttc cctgacgttt atttatctgg ggacgtagct tttgtttggg
     4981 tttagtttga gagcctttcg gagcttaatt tatatacttt gtacctttta tttctaaaat
     5041 taccaaagat attacgcaaa ggtaaattat tttcttttat gctttatctg atgaagccaa
     5101 atatcctcta ttgttgatca aaggaggcga aaggattcag aggcaaatgt gaggtccggg
     5161 ctattgctaa cctgagggaa atgactaccc atcagcagag ttcacttagc agactacgta
     5221 ggcaatggaa ccaaaggttt ttcctttttt tttttctagg ttattttttt ctttctttcc
     5281 ttcttttctc tatctataga gagaccaaaa ctaactcctg gaaggagaaa aatacggggc
     5341 tactgcagag aaaagaaacc aagacaatag tattatagct cctacggaaa gaatgggcta
     5401 tcatctcaaa gagagagaat tgaatgtatg atgctgaaac ttagaatata atggaggaga
     5461 cacttaggat gaattcagag agaacagaga agtgtctggc tgcatgagac cacttctaga
     5521 ataaagagaa ttttagaacg ttcagatgcc acttttgttt aagggctgtg ctctgatcgc
     5581 tgcgttaatt ttggttttat cttggctttt atcctctggt tcccttctgg tttttttttt
     5641 tttttttttt ttgttgttgt ttttcccccc ctctcaaatt atgatttggt cagtgttttt
     5701 catttccaca cacaagaaaa aggtggcatt cccatccact cgtaagctta gactagaaca
     5761 tctttggcaa ttactcctga aggtttgctg tgcttttata gaggggcagt ctgtggttat
     5821 tcatgccccg ccctgtcccc cctcttttcc aggcagcttc atgatgtgca ggcagtagcc
     5881 aggcagggtc attggaaggg ggccctgtgc ttctaaactg agtggttgct ggttagatat
     5941 tcaaaagagg ataaaaatct ggtagattag ttcattctca gcatgtgtag ctagacacga
     6001 gtaaagatag cgcatgagga ctgttagtac gcatacctca gttcaaacct ttagggaatg
     6061 agtaaaaaaa aaattaaaaa tatacctttc actcagtcac acttagtcgt atgtcttgca
     6121 tgcttagtct aaagactgta gcagagaata aataaaaaag aagaattagg ttttatgtat
     6181 ctttgcaggt gtcatagcct cgaagaagaa ccaactgaaa aaaaaaaaaa aagaaaaagt
     6241 ctcaggcttt acagcaagca atcttcactc tgacttttac agttctgatt ctgtccctcg
     6301 gggggattgt ggtcgcttct ctagaatggg gttgcttcgg ttgtacatat atcccgatgt
     6361 gtctgtgtgg gtctttgtct ttttgcgggg gagggctgag gggaggggtt tttttttgtt
     6421 ttgttttgtt ttaattattt tattttttag gtattgttcc taaaaaggaa taaatgcata
     6481 cacctgtttg tcaaaacatc tttgcttttt gtgcaactgc attttattaa tgatactttt
     6541 ttttaaagaa aaaaaaggaa aagaaaatag tatctttggg ggcaaatcta ctgtatgtaa
     6601 tgggtttgca gtcagtgctg aacatgtgct ttatttccct gcccctgatt tacaaacgct
     6661 ggatgacatg ttgatatatg ggaagaagga aaaaactcca cacttctctc tccctctctc
     6721 tctctctccc tccctccttc cctccctccc ccaaccccct tgcttttaaa ttgtaacata
     6781 gttgacataa tttgtttctt ttcctaccct cattatttgg aacattttgt actttgtaca
     6841 ggttcgtgga gtggggagag agagagagag agagagagag agagagagag tgagtgagtg
     6901 tgggtgttac tccgtttttg atacattcct atttcttgtg tttatcacac cactgcctcc
     6961 ttgactatct taaacaagtt cctaagtttg aaaagagaaa aaaaaatgtt taaaaaaaat
     7021 gttctctctt gccgcagtca atatttttgc atgatgaaat tccaggctca cactttaaaa
     7081 gttttatcag taaagtagtg attaataatg ggaagtgttg caaatatgga actctttgta
     7141 taaaagtttt tttacaaggt cccaaggtgt aaagacaatt ttgttactct tttctttctt
     7201 ttcttagcaa atctaagcaa acatgaggga gattggacct atgtgtcaga cacagtcatg
     7261 atgaggaccc acctccatgt tcttagggtc tatccatgtg agaaggctta gggccatcaa
     7321 agggtgaact gtctaggctt gcgtgcatgg cgacccagct gccagtccct tccccacatc
     7381 agaagatagt tgacttcata ttcttagcat cttcagccat aataaagcct tggtttaaaa
     7441 gaaaagaaaa gaaaagaaaa gaaaataata gagccaaaaa cacaatataa atcactagct
     7501 cctttatttt cttcagttac aacattgaat cgaaaagtct ctcctccttt ccacattcta
     7561 gctgagctct ctgtctccca gggcaaaaag caaactctgc taattaaatc ttttccgtac
     7621 ctgttggtca gtgccatacc ctcctgacag tctggaagtg gtttacaact cggttttact
     7681 ctattatcct gagaagcaaa tggacaattc taatggcgtc ttgtgggtcc agtgtaactc
     7741 aaagcggtcc ctgctaccca ggagcctggg tagaggtggt gcggtctggg ttgtgagtgt
     7801 ggtgctctct gtatctgtga tgccactaac agggattgtt ttgttttgtt ttgataaggc
     7861 ataaaagaat ctcattcctt gacatcaact gtaattccat cattccatgt ctgtggatac
     7921 agacaataaa aaaaaaaaaa gttgtgtagt cagtagtaat tactgacatg agcgcattct
     7981 caaatgcaat aaaaatgctg gttgttcaca ctggtagaca aagttgccac agactaagtt
     8041 ttttccccac ttctgacctc tacatcagtc acacacccca agctgcctct tagcagctac
     8101 tccaagccag gttcccaatc agccctcact ggcatcggcg agcaggctaa gggaagggtc
     8161 ccgaggaaag gcagacgggt tagttccttc agagggaaca tactgtcttt cttcaccaag
     8221 tgtgataaag aggaaagaaa aaagtttaat aactaacacg gagagagcca aactaaaatt
     8281 tcagaggaaa gcaatttcat gaataattca ttgacatttc acatctgcaa gatcagtcat
     8341 ccaaataaaa cgctaacgtc aaaaccatgc accatctaca gcattctcat caagaaagct
     8401 ctttgcatat aaggataaat gcttagatta gaacaaatga ttacataaaa atgctctatc
     8461 aaaagtgtgc taggctaacc acacagaaga cagcagatct ggatggagaa ccacaggtcc
     8521 caggaagcca cctttagaga ttatttttaa ttctgtactt ttagaaaaat gtgctttttc
     8581 tcttttgctt aattacatca catgtattct aagtactaat gaacttaact gtgtttttca
     8641 acacagttgt aacattgtaa agcttcatgt ggtggtgcat gcctttaagc ctagcacttg
     8701 ggaagcagag gcaggctcag ttctgtgagt tcaaggccag cctggtctac atattgagtt
     8761 cagccaagtg atatagcccg tgcctcaaaa caaccaaata aaccttaaag tagccgaacc
     8821 acggcatctt aaccactgtg actgtaattc caagcacatc tgtaaagctt tcagatgaca
     8881 aatgtcctta caaacatctt tcccaggaca gcatacctcc ccattttggg caaacattag
     8941 aagggtgtct cctgcattgt ttatgaatct acattttaca ttttctacaa cagtacggtt
     9001 ttgcttgggg tggttttggt ttcagtttgt tttcattttg agacagggtc tcaccatgta
     9061 gccctggttg gtttagaatt ctcctaggaa aatcaggcag cctaccttat taaaattgca
     9121 ggggggttgg ggatttagct cagcggtaga gcgcttgcct agaaagctca aggccctggg
     9181 ttcggtcccc agctccaaaa aaaaaaaa
//
