LOCUS       XM_017592560            9064 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P1 (Foxp1), transcript
            variant X12, mRNA.
ACCESSION   XM_017592560
VERSION     XM_017592560.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017592560.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9064
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..9064
                     /gene="Foxp1"
                     /note="forkhead box P1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 68 ESTs, 9 long
                     SRA reads, 3 Proteins, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 103
                     samples with support for all annotated introns"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
     CDS             975..3107
                     /gene="Foxp1"
                     /codon_start=1
                     /product="forkhead box protein P1 isoform X7"
                     /protein_id="XP_017448049.1"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
                     /translation="MMQESGSEAKSNGSTIQNGSSGGNHLLECGTLRDTRSNGEAPAV
                     DLGAADLAHVQQQQQQALQVARQLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
                     QQQQQQQVSGLKSPKRNDKQPALQVPVSVAMMTPQVITPQQMQQILQQQVLSPQQLQV
                     LLQQQQALMLQQQLQEFYKKQQEQLQLQLLQQQHAGKQPKEQQQQQVATQQLAFQQQL
                     LQMQQLQQQHLLSLQRQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEE
                     TTGSNHSSLDLTSTCVSSSAPSKTSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHP
                     LYGHGVCKWPGCEAVCDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDK
                     ERLQAMMTHLHVKSTEPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPV
                     TQGPSVITTTSMHTVGPIRRRYSDKYNVPISSADIAQNQEFYKNAEVRPPFTYASLIR
                     QAILESPEKQLTLNEIYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAV
                     WTVDEVEFQKRRPQKISGNPSLIKNMQSGHAYCTPLNAALQASMAENSIPLYTTASMG
                     NPTLGSLASAIREELNGAMEHTNSNESDSSPGRSPMQAVHPIHVKEEPLDPEEAEGPL
                     SLVTTANHSPDFDHDRDYEDEPVNEDME"
ORIGIN      
        1 gctgcgctcg gaaactttga ttccttgtcc ccctccccac ctgttgtgag ctccgcctta
       61 gtccctggag actggcggtg acacacacgg gcgccaggga gctccgcgcc cagaaacaaa
      121 gtctcatgcc cccccacccc agtgtttgct tggaaattgc tgcctgcagc acccccattc
      181 ccgcgcagct cccgccccct gggagtctaa ggactaaata aacagttgta actccaaacc
      241 ttgcgcctgc caccgcagcc ctatcccacc cctttccccc ggtcctgccc ctcctttttt
      301 gttgttgcaa ctttgtaaga tcccgggaag gtgctgagac taaggctcaa gccgggctcc
      361 gggtttcccg atccctgcag ggatcccccg cggcgcatcc tcctaccctg tcccccccgg
      421 agctcggggt cctctccttc ctgctgcccc cctatctact ccggccccct ccgcctaatc
      481 acctcgtccc cttcgagccc ctcactacac aaccttcacg gaaggaagac ttgctgaggg
      541 tcgccccggt ctcttgtcga tcgcagaccc cgaaactttg ccccaagagg acggcgcgcg
      601 gcgggcgagg ggcagcggcg gcggcggcgg cggcgcggag aagcgtggag ctgccggcgc
      661 ctcctccccg gactccgtgg cgtcccagga gcttctgctg acgatcccgg tttccgaggg
      721 aaccctttcg gcaatgttga gggctgcgct cctttctctg ccgtgcggtc agccatgagc
      781 ggatgggtgt gatgcctgct agcataaagg gttcctcctg tgtgctgcag tccccctgcc
      841 agtgacccca ggctttttat ggctgtgaga ctcattaaaa gctcaggggt gagacttgac
      901 ctttggaggt gactataact gaagattgaa ttactgaagc caaaaaaaat aaataaataa
      961 aaggtttttg agtcatgatg caagaatctg ggtctgaggc aaaaagtaac ggatcaacca
     1021 tccagaacgg gtccagcggt ggcaaccact tactagagtg cgggacactt cgtgacactc
     1081 ggtccaacgg agaggcacca gcggtggacc tgggagcagc cgaccttgcc cacgtccagc
     1141 agcagcagca gcaggccctg caggtggcaa ggcagctcct ccttcaacag cagcaacagc
     1201 agcagcagca gcagcaacaa caacagcagc agcagcagca acagcagcag cagcagcagc
     1261 agcagcagca gcaacagcag caacagcaac aacagcagca agttagtgga ttaaagtctc
     1321 cgaagaggaa tgacaagcaa ccagctcttc aggttcccgt gtcagtggct atgatgacac
     1381 ctcaggttat cactcctcaa caaatgcagc agatcctcca gcagcaagtg ctgagcccac
     1441 agcagctcca ggttctcctc cagcaacagc aggccctcat gcttcaacag cagcttcaag
     1501 aattttacaa gaaacaacag gaacagttgc agcttcaact cctccaacag caacatgctg
     1561 gaaaacagcc gaaagagcag cagcagcagc aggtggctac ccagcagttg gctttccagc
     1621 agcagcttct tcagatgcag cagctgcagc agcagcacct cctgtctctc cagcggcaag
     1681 gccttctaac aattcagccc gggcagcctg cccttcccct ccaacctctt gctcaaggca
     1741 tgattccaac ggaactgcag cagctctgga aagaagtgac aagtgcccac actgcagagg
     1801 aaaccacagg cagcaaccac agcagcctag acctgaccag cacatgcgtc tcgtcctccg
     1861 caccttccaa gacctcccta atcatgaacc cacacgcctc taccaatgga cagctctcgg
     1921 tccacacccc caaaagggaa agcttgtccc acgaggagca cccccacagc caccctctct
     1981 acggacatgg tgtctgcaag tggccaggct gtgaagcagt ttgtgacgac ttcccggcct
     2041 ttctaaaaca tctcaacagt gagcatgcgc tggacgatag aagcacagct caatgtagag
     2101 tacaaatgca ggttgtacag cagttagagc tacagcttgc aaaagacaaa gagcgcctgc
     2161 aagccatgat gacccacctg catgtgaagt ctacagaacc caaagctgcc cctcagcccc
     2221 tgaatctggt atcaagtgtc accctctcca agtccgcctc agaggcttct ccacagagct
     2281 tacctcatac tccaacaacc ccaaccgccc ccctgactcc cgtcacccaa ggcccctctg
     2341 tcatcaccac caccagcatg cacacggtgg gacctatccg caggcggtac tcagacaaat
     2401 acaacgtgcc catttcttca gcagatattg cgcagaacca agaattttat aagaacgcgg
     2461 aagttagacc accatttaca tatgcatctt taattaggca ggccattctt gaatctccag
     2521 aaaagcagct aacactaaac gaaatctata actggttcac acgaatgttt gcttacttcc
     2581 gacgcaatgc agccacgtgg aagaatgcag tgcgtcataa tcttagtctc cacaagtgtt
     2641 ttgtgcgagt agagaacgtt aaaggggcag tatggacagt ggatgaagta gagttccaaa
     2701 aacggaggcc acaaaagatc agtggtaacc cttcccttat taaaaacatg cagagcggcc
     2761 acgcctactg cacacctctc aatgcagctt tacaggcttc catggctgag aacagtatac
     2821 ctctgtacac taccgcctcc atggggaacc ccacgctggg cagcctggcc agcgccatcc
     2881 gggaggagct gaacggggcc atggagcaca ccaacagcaa cgagagtgac agcagtccag
     2941 gcagatcccc tatgcaagct gtgcacccca tacacgtcaa ggaggaaccc ctcgaccccg
     3001 aggaagctga agggcctctg tccttagtga caacagccaa ccacagtcca gattttgacc
     3061 acgacagaga ttacgaagac gaacctgtaa acgaggacat ggagtgaacc cttgggcggg
     3121 ccgacccccg agaccgaaga ttgggaaaga agcaaaacaa attaaaaaaa aataaaaaga
     3181 aagaaaagca aaaagaaaaa agaaaagaaa ccacgtcaaa agttagcagt gaaagcgtcc
     3241 tccgcttctt gtacagtctg gaggattttc actacatttt gacaactctg aaatgtgtta
     3301 actcttagtg ccatcaagaa tcccatttgg gagtattttt gatttttcta ctttttgttg
     3361 acaaaaggga tttgtactct gtgcattgga tggacctgtt tggtacttgg gattttcctc
     3421 tttgagtcaa catcagtgtt gtaaattcga taaacggatt cacttttagc agcagacttt
     3481 gaactgcagt ttcgcccggc cgacgccgga caccgaggac acccgactga gctcacgtac
     3541 ctgcactgca gaccaagcct tcgcccgaat tcgagactcc agtggacgac ctatttgcac
     3601 agcactgcat gttgatttca ctgcctttac tcactttggt tggtttgttt ttgttttccg
     3661 cttccagttg ggatggggga aggcctttgt gtgtgtattg gggggagggg ttaaaaataa
     3721 ttatcccaaa ctttttaatg tattgctttt ttttttcttt tctttttttt ttttgcttct
     3781 tctttaccat tttaagttct gacctcaggc ctccatttgg gcccagggcc tcttggaggc
     3841 ttcgtgtttt ctgtaccttg tgatgaatgt taataggcgt ttttattata caaagctgaa
     3901 tgccgttttc ctcctcgtct gtagttctct ggcactcatt ccatttttcc tatagacatc
     3961 gccatgtttc tctcaagttc aaaacaaaac aaaacaaaac attccgtttc ggtctttttc
     4021 cataaaaaaa gatcccgaag gctgcacctt acacctgaag gtccccccaa cacggggaca
     4081 tgacgtcctg ccagaacgag aatgacagaa aagaaaagag agaaacgcac gcgcgcacac
     4141 actgtaggga catagcagat tcatttcaca aaagcagtat tgggggtggg acggggactg
     4201 ttggagattt ttctttttag tttttcatag cacccgccat tgtgagtaac cgctaccacg
     4261 tcaggaaaca caggcacgaa agaaaacaga agagagtaag caagtcctta atacttagac
     4321 tgtcgtgatg gccgtggaag gtttcccctc ctatcatcaa gtgaccagga ctgcaggcct
     4381 tgggttaccc ttaccagcat aggttgcttt gtttgcaaaa aaatgaccaa aaagccagct
     4441 tcgctaagca acgtacactc agcatggtga cagggctgag tctgcttcgg ttcagacctg
     4501 ctcggtggca ttcatctgtt ttaatgcaaa tgaggcttca cattgaactt gttatgggag
     4561 ttaatgagga ctgggctcag cagacgctaa tgtgtcagtt tccagtgtgc taagtcggta
     4621 ctgcagctcg gtctgcaatg tgagcatcac agccaccacc ccagtagcac agacttcacg
     4681 gaagaggaca ccaggtagac ggaggctccc aggaccaggg cccacagaac gtgatggctc
     4741 taggtcagta tggccctcag cccttcgaac ccctccgcac cgtctgcgcc cacttccctg
     4801 acgtttattt atctggggac gtagcttttg tttgggttta gtttgagagc ctttcggagc
     4861 ttaatttata tactttgtac cttttatttc taaaattacc aaagatatta cgcaaaggta
     4921 aattattttc ttttatgctt tatctgatga agccaaatat cctctattgt tgatcaaagg
     4981 aggcgaaagg attcagaggc aaatgtgagg tccgggctat tgctaacctg agggaaatga
     5041 ctacccatca gcagagttca cttagcagac tacgtaggca atggaaccaa aggtttttcc
     5101 tttttttttt tctaggttat ttttttcttt ctttccttct tttctctatc tatagagaga
     5161 ccaaaactaa ctcctggaag gagaaaaata cggggctact gcagagaaaa gaaaccaaga
     5221 caatagtatt atagctccta cggaaagaat gggctatcat ctcaaagaga gagaattgaa
     5281 tgtatgatgc tgaaacttag aatataatgg aggagacact taggatgaat tcagagagaa
     5341 cagagaagtg tctggctgca tgagaccact tctagaataa agagaatttt agaacgttca
     5401 gatgccactt ttgtttaagg gctgtgctct gatcgctgcg ttaattttgg ttttatcttg
     5461 gcttttatcc tctggttccc ttctggtttt tttttttttt ttttttttgt tgttgttttt
     5521 ccccccctct caaattatga tttggtcagt gtttttcatt tccacacaca agaaaaaggt
     5581 ggcattccca tccactcgta agcttagact agaacatctt tggcaattac tcctgaaggt
     5641 ttgctgtgct tttatagagg ggcagtctgt ggttattcat gccccgccct gtcccccctc
     5701 ttttccaggc agcttcatga tgtgcaggca gtagccaggc agggtcattg gaagggggcc
     5761 ctgtgcttct aaactgagtg gttgctggtt agatattcaa aagaggataa aaatctggta
     5821 gattagttca ttctcagcat gtgtagctag acacgagtaa agatagcgca tgaggactgt
     5881 tagtacgcat acctcagttc aaacctttag ggaatgagta aaaaaaaaat taaaaatata
     5941 cctttcactc agtcacactt agtcgtatgt cttgcatgct tagtctaaag actgtagcag
     6001 agaataaata aaaaagaaga attaggtttt atgtatcttt gcaggtgtca tagcctcgaa
     6061 gaagaaccaa ctgaaaaaaa aaaaaaaaga aaaagtctca ggctttacag caagcaatct
     6121 tcactctgac ttttacagtt ctgattctgt ccctcggggg gattgtggtc gcttctctag
     6181 aatggggttg cttcggttgt acatatatcc cgatgtgtct gtgtgggtct ttgtcttttt
     6241 gcgggggagg gctgagggga ggggtttttt tttgttttgt tttgttttaa ttattttatt
     6301 ttttaggtat tgttcctaaa aaggaataaa tgcatacacc tgtttgtcaa aacatctttg
     6361 ctttttgtgc aactgcattt tattaatgat actttttttt aaagaaaaaa aaggaaaaga
     6421 aaatagtatc tttgggggca aatctactgt atgtaatggg tttgcagtca gtgctgaaca
     6481 tgtgctttat ttccctgccc ctgatttaca aacgctggat gacatgttga tatatgggaa
     6541 gaaggaaaaa actccacact tctctctccc tctctctctc tctccctccc tccttccctc
     6601 cctcccccaa cccccttgct tttaaattgt aacatagttg acataatttg tttcttttcc
     6661 taccctcatt atttggaaca ttttgtactt tgtacaggtt cgtggagtgg ggagagagag
     6721 agagagagag agagagagag agagagtgag tgagtgtggg tgttactccg tttttgatac
     6781 attcctattt cttgtgttta tcacaccact gcctccttga ctatcttaaa caagttccta
     6841 agtttgaaaa gagaaaaaaa aatgtttaaa aaaaatgttc tctcttgccg cagtcaatat
     6901 ttttgcatga tgaaattcca ggctcacact ttaaaagttt tatcagtaaa gtagtgatta
     6961 ataatgggaa gtgttgcaaa tatggaactc tttgtataaa agttttttta caaggtccca
     7021 aggtgtaaag acaattttgt tactcttttc tttcttttct tagcaaatct aagcaaacat
     7081 gagggagatt ggacctatgt gtcagacaca gtcatgatga ggacccacct ccatgttctt
     7141 agggtctatc catgtgagaa ggcttagggc catcaaaggg tgaactgtct aggcttgcgt
     7201 gcatggcgac ccagctgcca gtcccttccc cacatcagaa gatagttgac ttcatattct
     7261 tagcatcttc agccataata aagccttggt ttaaaagaaa agaaaagaaa agaaaagaaa
     7321 ataatagagc caaaaacaca atataaatca ctagctcctt tattttcttc agttacaaca
     7381 ttgaatcgaa aagtctctcc tcctttccac attctagctg agctctctgt ctcccagggc
     7441 aaaaagcaaa ctctgctaat taaatctttt ccgtacctgt tggtcagtgc cataccctcc
     7501 tgacagtctg gaagtggttt acaactcggt tttactctat tatcctgaga agcaaatgga
     7561 caattctaat ggcgtcttgt gggtccagtg taactcaaag cggtccctgc tacccaggag
     7621 cctgggtaga ggtggtgcgg tctgggttgt gagtgtggtg ctctctgtat ctgtgatgcc
     7681 actaacaggg attgttttgt tttgttttga taaggcataa aagaatctca ttccttgaca
     7741 tcaactgtaa ttccatcatt ccatgtctgt ggatacagac aataaaaaaa aaaaaagttg
     7801 tgtagtcagt agtaattact gacatgagcg cattctcaaa tgcaataaaa atgctggttg
     7861 ttcacactgg tagacaaagt tgccacagac taagtttttt ccccacttct gacctctaca
     7921 tcagtcacac accccaagct gcctcttagc agctactcca agccaggttc ccaatcagcc
     7981 ctcactggca tcggcgagca ggctaaggga agggtcccga ggaaaggcag acgggttagt
     8041 tccttcagag ggaacatact gtctttcttc accaagtgtg ataaagagga aagaaaaaag
     8101 tttaataact aacacggaga gagccaaact aaaatttcag aggaaagcaa tttcatgaat
     8161 aattcattga catttcacat ctgcaagatc agtcatccaa ataaaacgct aacgtcaaaa
     8221 ccatgcacca tctacagcat tctcatcaag aaagctcttt gcatataagg ataaatgctt
     8281 agattagaac aaatgattac ataaaaatgc tctatcaaaa gtgtgctagg ctaaccacac
     8341 agaagacagc agatctggat ggagaaccac aggtcccagg aagccacctt tagagattat
     8401 ttttaattct gtacttttag aaaaatgtgc tttttctctt ttgcttaatt acatcacatg
     8461 tattctaagt actaatgaac ttaactgtgt ttttcaacac agttgtaaca ttgtaaagct
     8521 tcatgtggtg gtgcatgcct ttaagcctag cacttgggaa gcagaggcag gctcagttct
     8581 gtgagttcaa ggccagcctg gtctacatat tgagttcagc caagtgatat agcccgtgcc
     8641 tcaaaacaac caaataaacc ttaaagtagc cgaaccacgg catcttaacc actgtgactg
     8701 taattccaag cacatctgta aagctttcag atgacaaatg tccttacaaa catctttccc
     8761 aggacagcat acctccccat tttgggcaaa cattagaagg gtgtctcctg cattgtttat
     8821 gaatctacat tttacatttt ctacaacagt acggttttgc ttggggtggt tttggtttca
     8881 gtttgttttc attttgagac agggtctcac catgtagccc tggttggttt agaattctcc
     8941 taggaaaatc aggcagccta ccttattaaa attgcagggg ggttggggat ttagctcagc
     9001 ggtagagcgc ttgcctagaa agctcaaggc cctgggttcg gtccccagct ccaaaaaaaa
     9061 aaaa
//
