LOCUS       XM_006236955            8416 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box P1 (Foxp1), transcript
            variant X15, mRNA.
ACCESSION   XM_006236955
VERSION     XM_006236955.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236955.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236955.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8416
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8416
                     /gene="Foxp1"
                     /note="forkhead box P1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 66 ESTs, 10 long
                     SRA reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 79 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
     CDS             720..2459
                     /gene="Foxp1"
                     /codon_start=1
                     /product="forkhead box protein P1 isoform X10"
                     /protein_id="XP_006237017.1"
                     /db_xref="GeneID:297480"
                     /db_xref="RGD:1308669"
                     /translation="MMTPQVITPQQMQQILQQQVLSPQQLQVLLQQQQALMLQQQQLQ
                     EFYKKQQEQLQLQLLQQQHAGKQPKEQQQQQVATQQLAFQQQLLQMQQLQQQHLLSLQ
                     RQGLLTIQPGQPALPLQPLAQGMIPTELQQLWKEVTSAHTAEETTGSNHSSLDLTSTC
                     VSSSAPSKTSLIMNPHASTNGQLSVHTPKRESLSHEEHPHSHPLYGHGVCKWPGCEAV
                     CDDFPAFLKHLNSEHALDDRSTAQCRVQMQVVQQLELQLAKDKERLQAMMTHLHVKST
                     EPKAAPQPLNLVSSVTLSKSASEASPQSLPHTPTTPTAPLTPVTQGPSVITTTSMHTV
                     GPIRRRYSDKYNVPISSADIAQNQEFYKNAEVRPPFTYASLIRQAILESPEKQLTLNE
                     IYNWFTRMFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEFQKRRPQK
                     ISGNPSLIKNMQSGHAYCTPLNAALQASMAENSIPLYTTASMGNPTLGSLASAIREEL
                     NGAMEHTNSNESDSSPGRSPMQAVHPIHVKEEPLDPEEAEGPLSLVTTANHSPDFDHD
                     RDYEDEPVNEDME"
ORIGIN      
        1 aaataataat tttcaataaa aatttgtggg ttggttttgt tgttttgttt tgttgttttt
       61 ttttaaatac acaaaccaga aagttttttt aagtttagaa atagcataat tgagaagtga
      121 tttccgaagc tgctgatacc ttgtataggc taatctgcca cttaaatcct gacactagag
      181 ccaacaaagt ttagcattat tggtaacttt aaaaggggga aaaaactgcc cttcggctct
      241 tgctctcagc atctaagcag tgagttgttt ctaaccgagg tcatctcaaa gtgcctgttg
      301 agaggcgctt ttgttgtggc tgatgttgca taaataagaa aggaatttca agaattattt
      361 cttagcaaac gtgtggcagc tgtcgttcta gaggggaagt agcgaagagg cacgttgcgt
      421 ggtgaattat ttggagctcc atgtggggtt ccttccctgc gtcaacaggc atactttgtg
      481 aggtggcctc tggatccgca agggtggcag ggagatgaag gctgggcccc accaccgacg
      541 tgaagtgaaa gttctccacc gaggcgggtt ttcgaggaaa ggcacagcct ggcgccccgc
      601 aagcctgtct ttgggccggt tcggtagctc ggagcagctg agtctgtagg cttgcttggc
      661 ggagggcgca tggggggccc tcctgctccg cgtcccggaa ggttcccgtg tcagtggcta
      721 tgatgacacc tcaggttatc actcctcaac aaatgcagca gatcctccag cagcaagtgc
      781 tgagcccaca gcagctccag gttctcctcc agcaacagca ggccctcatg cttcaacagc
      841 agcagcttca agaattttac aagaaacaac aggaacagtt gcagcttcaa ctcctccaac
      901 agcaacatgc tggaaaacag ccgaaagagc agcagcagca gcaggtggct acccagcagt
      961 tggctttcca gcagcagctt cttcagatgc agcagctgca gcagcagcac ctcctgtctc
     1021 tccagcggca aggccttcta acaattcagc ccgggcagcc tgcccttccc ctccaacctc
     1081 ttgctcaagg catgattcca acggaactgc agcagctctg gaaagaagtg acaagtgccc
     1141 acactgcaga ggaaaccaca ggcagcaacc acagcagcct agacctgacc agcacatgcg
     1201 tctcgtcctc cgcaccttcc aagacctccc taatcatgaa cccacacgcc tctaccaatg
     1261 gacagctctc ggtccacacc cccaaaaggg aaagcttgtc ccacgaggag cacccccaca
     1321 gccaccctct ctacggacat ggtgtctgca agtggccagg ctgtgaagca gtttgtgacg
     1381 acttcccggc ctttctaaaa catctcaaca gtgagcatgc gctggacgat agaagcacag
     1441 ctcaatgtag agtacaaatg caggttgtac agcagttaga gctacagctt gcaaaagaca
     1501 aagagcgcct gcaagccatg atgacccacc tgcatgtgaa gtctacagaa cccaaagctg
     1561 cccctcagcc cctgaatctg gtatcaagtg tcaccctctc caagtccgcc tcagaggctt
     1621 ctccacagag cttacctcat actccaacaa ccccaaccgc ccccctgact cccgtcaccc
     1681 aaggcccctc tgtcatcacc accaccagca tgcacacggt gggacctatc cgcaggcggt
     1741 actcagacaa atacaacgtg cccatttctt cagcagatat tgcgcagaac caagaatttt
     1801 ataagaacgc ggaagttaga ccaccattta catatgcatc tttaattagg caggccattc
     1861 ttgaatctcc agaaaagcag ctaacactaa acgaaatcta taactggttc acacgaatgt
     1921 ttgcttactt ccgacgcaat gcagccacgt ggaagaatgc agtgcgtcat aatcttagtc
     1981 tccacaagtg ttttgtgcga gtagagaacg ttaaaggggc agtatggaca gtggatgaag
     2041 tagagttcca aaaacggagg ccacaaaaga tcagtggtaa cccttccctt attaaaaaca
     2101 tgcagagcgg ccacgcctac tgcacacctc tcaatgcagc tttacaggct tccatggctg
     2161 agaacagtat acctctgtac actaccgcct ccatggggaa ccccacgctg ggcagcctgg
     2221 ccagcgccat ccgggaggag ctgaacgggg ccatggagca caccaacagc aacgagagtg
     2281 acagcagtcc aggcagatcc cctatgcaag ctgtgcaccc catacacgtc aaggaggaac
     2341 ccctcgaccc cgaggaagct gaagggcctc tgtccttagt gacaacagcc aaccacagtc
     2401 cagattttga ccacgacaga gattacgaag acgaacctgt aaacgaggac atggagtgaa
     2461 cccttgggcg ggccgacccc cgagaccgaa gattgggaaa gaagcaaaac aaattaaaaa
     2521 aaaataaaaa gaaagaaaag caaaaagaaa aaagaaaaga aaccacgtca aaagttagca
     2581 gtgaaagcgt cctccgcttc ttgtacagtc tggaggattt tcactacatt ttgacaactc
     2641 tgaaatgtgt taactcttag tgccatcaag aatcccattt gggagtattt ttgatttttc
     2701 tactttttgt tgacaaaagg gatttgtact ctgtgcattg gatggacctg tttggtactt
     2761 gggattttcc tctttgagtc aacatcagtg ttgtaaattc gataaacgga ttcactttta
     2821 gcagcagact ttgaactgca gtttcgcccg gccgacgccg gacaccgagg acacccgact
     2881 gagctcacgt acctgcactg cagaccaagc cttcgcccga attcgagact ccagtggacg
     2941 acctatttgc acagcactgc atgttgattt cactgccttt actcactttg gttggtttgt
     3001 ttttgttttc cgcttccagt tgggatgggg gaaggccttt gtgtgtgtat tggggggagg
     3061 ggttaaaaat aattatccca aactttttaa tgtattgctt ttttttttct tttctttttt
     3121 ttttttgctt cttctttacc attttaagtt ctgacctcag gcctccattt gggcccaggg
     3181 cctcttggag gcttcgtgtt ttctgtacct tgtgatgaat gttaataggc gtttttatta
     3241 tacaaagctg aatgccgttt tcctcctcgt ctgtagttct ctggcactca ttccattttt
     3301 cctatagaca tcgccatgtt tctctcaagt tcaaaacaaa acaaaacaaa acattccgtt
     3361 tcggtctttt tccataaaaa aagatcccga aggctgcacc ttacacctga aggtcccccc
     3421 aacacgggga catgacgtcc tgccagaacg agaatgacag aaaagaaaag agagaaacgc
     3481 acgcgcgcac acactgtagg gacatagcag attcatttca caaaagcagt attgggggtg
     3541 ggacggggac tgttggagat ttttcttttt agtttttcat agcacccgcc attgtgagta
     3601 accgctacca cgtcaggaaa cacaggcacg aaagaaaaca gaagagagta agcaagtcct
     3661 taatacttag actgtcgtga tggccgtgga aggtttcccc tcctatcatc aagtgaccag
     3721 gactgcaggc cttgggttac ccttaccagc ataggttgct ttgtttgcaa aaaaatgacc
     3781 aaaaagccag cttcgctaag caacgtacac tcagcatggt gacagggctg agtctgcttc
     3841 ggttcagacc tgctcggtgg cattcatctg ttttaatgca aatgaggctt cacattgaac
     3901 ttgttatggg agttaatgag gactgggctc agcagacgct aatgtgtcag tttccagtgt
     3961 gctaagtcgg tactgcagct cggtctgcaa tgtgagcatc acagccacca ccccagtagc
     4021 acagacttca cggaagagga caccaggtag acggaggctc ccaggaccag ggcccacaga
     4081 acgtgatggc tctaggtcag tatggccctc agcccttcga acccctccgc accgtctgcg
     4141 cccacttccc tgacgtttat ttatctgggg acgtagcttt tgtttgggtt tagtttgaga
     4201 gcctttcgga gcttaattta tatactttgt accttttatt tctaaaatta ccaaagatat
     4261 tacgcaaagg taaattattt tcttttatgc tttatctgat gaagccaaat atcctctatt
     4321 gttgatcaaa ggaggcgaaa ggattcagag gcaaatgtga ggtccgggct attgctaacc
     4381 tgagggaaat gactacccat cagcagagtt cacttagcag actacgtagg caatggaacc
     4441 aaaggttttt cctttttttt tttctaggtt atttttttct ttctttcctt cttttctcta
     4501 tctatagaga gaccaaaact aactcctgga aggagaaaaa tacggggcta ctgcagagaa
     4561 aagaaaccaa gacaatagta ttatagctcc tacggaaaga atgggctatc atctcaaaga
     4621 gagagaattg aatgtatgat gctgaaactt agaatataat ggaggagaca cttaggatga
     4681 attcagagag aacagagaag tgtctggctg catgagacca cttctagaat aaagagaatt
     4741 ttagaacgtt cagatgccac ttttgtttaa gggctgtgct ctgatcgctg cgttaatttt
     4801 ggttttatct tggcttttat cctctggttc ccttctggtt tttttttttt tttttttttt
     4861 gttgttgttt ttccccccct ctcaaattat gatttggtca gtgtttttca tttccacaca
     4921 caagaaaaag gtggcattcc catccactcg taagcttaga ctagaacatc tttggcaatt
     4981 actcctgaag gtttgctgtg cttttataga ggggcagtct gtggttattc atgccccgcc
     5041 ctgtcccccc tcttttccag gcagcttcat gatgtgcagg cagtagccag gcagggtcat
     5101 tggaaggggg ccctgtgctt ctaaactgag tggttgctgg ttagatattc aaaagaggat
     5161 aaaaatctgg tagattagtt cattctcagc atgtgtagct agacacgagt aaagatagcg
     5221 catgaggact gttagtacgc atacctcagt tcaaaccttt agggaatgag taaaaaaaaa
     5281 attaaaaata tacctttcac tcagtcacac ttagtcgtat gtcttgcatg cttagtctaa
     5341 agactgtagc agagaataaa taaaaaagaa gaattaggtt ttatgtatct ttgcaggtgt
     5401 catagcctcg aagaagaacc aactgaaaaa aaaaaaaaaa gaaaaagtct caggctttac
     5461 agcaagcaat cttcactctg acttttacag ttctgattct gtccctcggg gggattgtgg
     5521 tcgcttctct agaatggggt tgcttcggtt gtacatatat cccgatgtgt ctgtgtgggt
     5581 ctttgtcttt ttgcggggga gggctgaggg gaggggtttt tttttgtttt gttttgtttt
     5641 aattatttta ttttttaggt attgttccta aaaaggaata aatgcataca cctgtttgtc
     5701 aaaacatctt tgctttttgt gcaactgcat tttattaatg atactttttt ttaaagaaaa
     5761 aaaaggaaaa gaaaatagta tctttggggg caaatctact gtatgtaatg ggtttgcagt
     5821 cagtgctgaa catgtgcttt atttccctgc ccctgattta caaacgctgg atgacatgtt
     5881 gatatatggg aagaaggaaa aaactccaca cttctctctc cctctctctc tctctccctc
     5941 cctccttccc tccctccccc aacccccttg cttttaaatt gtaacatagt tgacataatt
     6001 tgtttctttt cctaccctca ttatttggaa cattttgtac tttgtacagg ttcgtggagt
     6061 ggggagagag agagagagag agagagagag agagagagtg agtgagtgtg ggtgttactc
     6121 cgtttttgat acattcctat ttcttgtgtt tatcacacca ctgcctcctt gactatctta
     6181 aacaagttcc taagtttgaa aagagaaaaa aaaatgttta aaaaaaatgt tctctcttgc
     6241 cgcagtcaat atttttgcat gatgaaattc caggctcaca ctttaaaagt tttatcagta
     6301 aagtagtgat taataatggg aagtgttgca aatatggaac tctttgtata aaagtttttt
     6361 tacaaggtcc caaggtgtaa agacaatttt gttactcttt tctttctttt cttagcaaat
     6421 ctaagcaaac atgagggaga ttggacctat gtgtcagaca cagtcatgat gaggacccac
     6481 ctccatgttc ttagggtcta tccatgtgag aaggcttagg gccatcaaag ggtgaactgt
     6541 ctaggcttgc gtgcatggcg acccagctgc cagtcccttc cccacatcag aagatagttg
     6601 acttcatatt cttagcatct tcagccataa taaagccttg gtttaaaaga aaagaaaaga
     6661 aaagaaaaga aaataataga gccaaaaaca caatataaat cactagctcc tttattttct
     6721 tcagttacaa cattgaatcg aaaagtctct cctcctttcc acattctagc tgagctctct
     6781 gtctcccagg gcaaaaagca aactctgcta attaaatctt ttccgtacct gttggtcagt
     6841 gccataccct cctgacagtc tggaagtggt ttacaactcg gttttactct attatcctga
     6901 gaagcaaatg gacaattcta atggcgtctt gtgggtccag tgtaactcaa agcggtccct
     6961 gctacccagg agcctgggta gaggtggtgc ggtctgggtt gtgagtgtgg tgctctctgt
     7021 atctgtgatg ccactaacag ggattgtttt gttttgtttt gataaggcat aaaagaatct
     7081 cattccttga catcaactgt aattccatca ttccatgtct gtggatacag acaataaaaa
     7141 aaaaaaaagt tgtgtagtca gtagtaatta ctgacatgag cgcattctca aatgcaataa
     7201 aaatgctggt tgttcacact ggtagacaaa gttgccacag actaagtttt ttccccactt
     7261 ctgacctcta catcagtcac acaccccaag ctgcctctta gcagctactc caagccaggt
     7321 tcccaatcag ccctcactgg catcggcgag caggctaagg gaagggtccc gaggaaaggc
     7381 agacgggtta gttccttcag agggaacata ctgtctttct tcaccaagtg tgataaagag
     7441 gaaagaaaaa agtttaataa ctaacacgga gagagccaaa ctaaaatttc agaggaaagc
     7501 aatttcatga ataattcatt gacatttcac atctgcaaga tcagtcatcc aaataaaacg
     7561 ctaacgtcaa aaccatgcac catctacagc attctcatca agaaagctct ttgcatataa
     7621 ggataaatgc ttagattaga acaaatgatt acataaaaat gctctatcaa aagtgtgcta
     7681 ggctaaccac acagaagaca gcagatctgg atggagaacc acaggtccca ggaagccacc
     7741 tttagagatt atttttaatt ctgtactttt agaaaaatgt gctttttctc ttttgcttaa
     7801 ttacatcaca tgtattctaa gtactaatga acttaactgt gtttttcaac acagttgtaa
     7861 cattgtaaag cttcatgtgg tggtgcatgc ctttaagcct agcacttggg aagcagaggc
     7921 aggctcagtt ctgtgagttc aaggccagcc tggtctacat attgagttca gccaagtgat
     7981 atagcccgtg cctcaaaaca accaaataaa ccttaaagta gccgaaccac ggcatcttaa
     8041 ccactgtgac tgtaattcca agcacatctg taaagctttc agatgacaaa tgtccttaca
     8101 aacatctttc ccaggacagc atacctcccc attttgggca aacattagaa gggtgtctcc
     8161 tgcattgttt atgaatctac attttacatt ttctacaaca gtacggtttt gcttggggtg
     8221 gttttggttt cagtttgttt tcattttgag acagggtctc accatgtagc cctggttggt
     8281 ttagaattct cctaggaaaa tcaggcagcc taccttatta aaattgcagg ggggttgggg
     8341 atttagctca gcggtagagc gcttgcctag aaagctcaag gccctgggtt cggtccccag
     8401 ctccaaaaaa aaaaaa
//
