LOCUS       XM_039112340            7839 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus forkhead box N3 (Foxn3), transcript
            variant X8, mRNA.
ACCESSION   XM_039112340
VERSION     XM_039112340.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112340.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7839
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7839
                     /gene="Foxn3"
                     /gene_synonym="Ches1"
                     /note="forkhead box N3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 109 ESTs, 2 long
                     SRA reads, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 29 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:314374"
                     /db_xref="RGD:1305711"
     CDS             319..1758
                     /gene="Foxn3"
                     /gene_synonym="Ches1"
                     /codon_start=1
                     /product="forkhead box protein N3 isoform X1"
                     /protein_id="XP_038968268.1"
                     /db_xref="GeneID:314374"
                     /db_xref="RGD:1305711"
                     /translation="MGPVMPASKKPESSGISVSSGLSQRYRGSGFSKALQEDDDLDFP
                     LPDIRLEEGTMEDEELTNLNWLHESKNLLKSFGESVLRSVSPVQDLDDDTPPSPAHSD
                     MPYDARQNPNCKPPYSFSCLIFMAIEDSPTKRLPVKDIYNWILEHFPYFANAPTGWKN
                     SVRHNLSLNKCFKKVDKERSQSIGKGSLWCIDPEYRQNLIQALKKTPYHPPPTPQAYQ
                     STSGPPIWPGSTFFKRNGALLQDPDIDAASAMMLLNSPPEIQAGFSPGVIQNGARVLS
                     RGLFPGARPLPITPIGMTAAIRNSITSCRVRTESEPPCGSPVVSGDPKEDHNYSSAKS
                     SNARSTSPTSDSISSSSSSADDHYEFATKGSQEGSEGSFQSHESHSEPEEDDRKPSQK
                     EGKDALGDSGYASQHRKRQHLAKARKVPSDTLPLKKRRTEKPPESDDEEMKEAAGSLL
                     HLAGIRSCLNNITNRTAKGQKEQKETAKN"
ORIGIN      
        1 ccgggcgctg gagccgggtg ttccggccgc ggtccgtgca gctcggctgg gagacggcgc
       61 gagccggcgg cggggccccc cgcgagtcca gcgccgctgc agccccccaa tgcggccgcg
      121 agaagcagct ggggggcagg cgatcgaagc ctctagaagt gtcgtctagt gattatgaag
      181 gcacctttgt cctttctgga gagatgctga cctccgtttc ctggacccat tctgactcag
      241 gtcacaggga gcgactgtgg acccagggag gagcctctgt gtgaaatcgc tgattccttt
      301 tacggagcct tcacgtaaat gggtccagtc atgcctgcca gtaagaagcc cgagagctca
      361 ggaatcagtg tgtccagtgg actgagtcag cggtaccggg gcagtggttt ctccaaggcc
      421 ctccaggaag atgatgatct cgacttccct ctgcctgaca tcagattaga agaggggacc
      481 atggaagatg aagagctgac caacctgaac tggttgcacg agagcaaaaa cttactgaag
      541 agctttgggg agtcggtcct gaggagtgtc agtcccgtgc aggacctgga cgatgatacc
      601 ccgccgtccc ccgcccactc ggacatgccc tacgatgcca ggcagaaccc caactgcaag
      661 cccccctact cttttagctg cctcatattc atggccattg aggactctcc aaccaagcgc
      721 ctgccagtga aggatatcta caactggatc ttagaacatt tcccgtattt tgcaaatgca
      781 cctactgggt ggaagaactc agtgagacat aatttgtccc tgaataagtg tttcaagaaa
      841 gtggacaaag agaggagtca gagtattggg aaaggatcat tgtggtgcat agacccagag
      901 tatagacaaa atctaattca ggctttgaaa aagacaccgt accacccacc tcctactcct
      961 caggcttatc aaagcacatc aggtccaccc atctggccgg gtagtacctt cttcaagaga
     1021 aatggagccc ttctgcaaga tcctgacatt gatgctgcca gtgccatgat gcttttgaat
     1081 tctccccctg agatacaagc aggtttttct ccaggagtga tacaaaatgg agcgagggtt
     1141 ctgagccgag ggctgtttcc tggtgcccgc ccgttgccaa tcactcccat tgggatgacg
     1201 gcagccataa ggaatagcat caccagttgc cgggtgcgga ctgagagcga gccgccatgt
     1261 ggctccccag tggtcagtgg ggaccccaag gaggaccaca actacagtag tgccaagtcc
     1321 tccaatgccc ggagcacctc tcccaccagc gactccatct cctcctcctc ctcctcagcc
     1381 gacgaccact acgagtttgc cacgaagggg agccaggagg gcagtgaggg aagcttccag
     1441 agccatgaga gccacagcga accagaggag gacgacagga aacccagcca gaaggagggc
     1501 aaggacgccc tgggggacag cggatacgca tcccagcaca ggaagcgcca gcacttggcc
     1561 aaggccagga aagtccccag cgacacactg cccctcaaaa agagacgcac ggagaagccg
     1621 cccgagagcg acgatgagga gatgaaggag gcggccggtt cgctcctgca cttggcaggg
     1681 attcggtcct gtttgaacaa catcaccaat cggacggcca aggggcagaa agaacaaaag
     1741 gaaaccgcaa aaaattgaaa caagtctctg atttgttttg aacttacggc catttggttt
     1801 cagcatgtca ggagatttct aatgatttgt ggcaatatca gcaatttttt tctttttctt
     1861 ttttcctttt gttggtttgg ttttctttac tttctttcct tttttttttt taatttgccc
     1921 cccactcctt tgtttttgga cccttaagaa ttttctgttt aaaggagatt gaagccatag
     1981 aaactcatat cgacactcag ccgttttaca aaagcttttc tttatctgaa cacaaaaacc
     2041 gaaaaacaaa aagccaaaat taaccattgc ttcctgcagc ctgtcagacc tgtgcttaaa
     2101 cccacaggga tgttcgtgtc aatgccacag gaacgaggca cgcaatcacc accgctcagc
     2161 ccaaccctta ggtttaacaa gtcagttgag cttggagtga ggctgagaag catttgcaga
     2221 gactgaagag cccaggtccc ctagaaacag attatcccca ggctctggcc ctggcatccc
     2281 accttaccag aagcgccatc gccattgccc tgtggcaagc cgggggcctg cctgcccgtc
     2341 ctctgcactt cccagccttg agcctggtaa catctcccag gttggacacc agactgttca
     2401 gctggattag gtgtcagtga ctggaaaggg aaagcaggga ttgttagagc catcgataac
     2461 cactgagttc tgctctatgt taaatcaaga agacgttcca aaagccataa gcctgaaggt
     2521 tggtcctgtg tacacacaca cacacacaca cacacacaca cacacacaca cgacttaagg
     2581 tgatgtagaa aacacgctgt gccctcttaa ctgcacaagg aaaagcaatc gggcccaaga
     2641 aatgacagta gctgttaaga aaggaaaatg gtgcagattt tttccttcta tataatctga
     2701 tccaagttgg gggtgggggg tgctacagaa actgccatta gtattatggt gtcttttctt
     2761 gaggttaaag gcacgtttgg tggactcaaa aaacaaaaac atggcaacaa tacaactcct
     2821 gcactgtcct caaaaattaa tatcagtact catttttgca acaaaaaaga ccagtgattt
     2881 tcacattcag ccagtgtagc cagcagaaat ttctgatcca caatgcatgg attcctttga
     2941 agaaacgaaa aaaggaaaaa aaaagaaaaa gaaaaaaaaa tcacaaaaac aaactttttt
     3001 ttattcagaa ataacaaagt tcttgtaagg taaatgatgt atttagcatg aagcatgaat
     3061 tattttcata taaatataga gaatagagag aagactatgc ctctaatttt taagccctta
     3121 agcttagagg ccctttgttc tttttttttt cctccctttt tctttctttt ttttccccct
     3181 ttttctttct ttctttcttc tttttttgtt gtcgttatta ttttgtttgg ttttttgaag
     3241 caggtgttta aggtttaacc ttcttcaggg acaaattctg actgatgggg agcttactct
     3301 gcaatatcaa ctatcttcat gctctggtag gggcttgggt ggctgagctc tatactgcct
     3361 tgtctacact cagccccgac ccctctgatt ctctactgaa gagtgtgtcc ttccctttgt
     3421 ctgtatgtgt ttaacatgac gcaataattc gagggcaaac ttagtgtgta cgatagaatc
     3481 aagagagttg tgggacgctt acttgaggaa aatcattacc gtgatttggt tctaggaaaa
     3541 aggcagtgaa taattatgca aattcgccag aggaagggga aacatgctaa tgggccttac
     3601 tgggtgaggg taagagatgg gtacttgggt aggaggaagt aagtgatcga ggggttggat
     3661 ggagcagccc tgagccttcc acagcgacgg tctgatgtcg cagcaagacg ggggctggcc
     3721 atctctgcca cttcaacaca gtgaccacct tgggactaag accacctaaa tagtgagagc
     3781 tgagtaacaa ccaaaccacg tcacagaagc cagaaacttc agttaccttt gccaaaaaaa
     3841 aaaaaaaaaa aaaaaaaagt ttttccttga ggtctaagag aaatccctaa aacagtatgg
     3901 cctcctgtcc aaatggaggg aacttttaaa agcaaaaaca cttccctggc tcagggtgtg
     3961 atgtttggga gatgggggaa actaaagtga ccttgaactc ttgaaacagg gcagtggtgg
     4021 gcctttaaag ctatgcccac gtgtcagcac caggtaccat ggtaacctcg gcaacccaga
     4081 aggttatctg gtgcgtttcc ccctacctaa cctgagggca gctttgggtg gggggggggc
     4141 tcccacttta gggcaggcta gatttaccct cacatggccc tcagcctgga ctctctcagc
     4201 atgggggttc agggtcagat gagagcacag gttgtgttct ccacaaacct ctgacaccct
     4261 acaagccatc cacagctctg gaaccctgag ccacaaattg atttctactg tcccctttac
     4321 caagtccaaa agactcccgc ccccaccccc aagatgttca aactcagacg tgagggtaaa
     4381 ggtgagcact cagcactgtt tctggcgggg acttcttccg acggaaaccc cacgcgggct
     4441 gtctcccctc agttcattgt tctcagaagg ggctgaggcc tctttcagag ataacaagat
     4501 gcagtgtgtg tgtgatttac ttttctgatc tcgccgagat ctggaaaact atcttataca
     4561 agtgcgttct gaaccccaga accactccgt ttgcataaat acctcatcgg gcagctttgt
     4621 aagtgttatt ttcccgagcc tccccttggc acctttgttg gaattttctg gaagacttgt
     4681 tggggaaact ttagtaaggg tacttttttc tattttcctc ctgttttggg cggcacgttc
     4741 attgtgcgta accaaaacaa cggctcaatt gtgtttaact ctgtattttg actgttgagg
     4801 cgaaaacaaa atcatcaatg tgtatgtggc tgtttgtagc gaagtctgcc gaatgaggcg
     4861 gcccatgtcc ttaacaagcc aaggggcagg aggcgccctc tcttccccct cccccaagag
     4921 cagtagagaa tttaagcaca agcctatttg tgaaagaata ttttgcttaa gtgtaattca
     4981 ctttagtgtt ggacttcctt cccaaacgtc aggtgttctt ttagctttca aactagcctg
     5041 tgtatccatt agaaggacag atcgcctgag catcgtgaaa gggatgcggt gttgttgctg
     5101 ttttcttttt tttttccttg catttctcct gtggggagaa gtggcggttc atgtgtcatt
     5161 ccagtatctc acgtactcac atggggtggg gggaggggga gggggaacta tagcaatatt
     5221 tacagatgct ttggggacac atcagcaccg cgacattaca actactggct gtcggccctc
     5281 ggacacattt aagagaagag agaggctcgc tttcttttct caggtgatac atcgacattt
     5341 ttgtatcccg ctcctggcag tctttcctcg ttctctagta ctttttggaa agggtctgca
     5401 ccgtagattt tctttctaac acatcaccaa gctcctactt ccctctgcat ctccagtcag
     5461 tatgttcgtt cttcaagagt tcttttggta aagctggctg tccgaaacta acgctgaacc
     5521 aaacccacat gtggattgtg gcatgaggaa accatggtca ggatgactgg ggcaggtctc
     5581 catcttgggg ctgagccttt taagagggaa tgggttggtg ccctttcccg agaacaggtt
     5641 tttcttgtac agtcattagc atgtctagtg cttcctgttc atagcagttc caacacgggg
     5701 ctttctagaa ggactgttgc gtccagtggg gcccaagcaa gagaaggggt ggtttgggtg
     5761 cctagaggcc caacacagca ggccaatgta caacgcccca agccaccaat ttgggtttta
     5821 ttgatgccac tccaacctct ggactctccc tggaagggag agggtcctga catgatgcca
     5881 gagttaggga caagtgctca gaatgggaag ttttcccata tatgggatta gactaaattc
     5941 aatgtgattt ctttttcccc ttgcaaatcc tattcaggtt gggactcatt tctttctggt
     6001 ggatcacagc tgcccagatg tgtagattgg tttctgtgtc ctgtagacaa gtccttttct
     6061 ctcatcttca gcagggtttt ttatttcgtt tttttgccac caaaagaaaa catcggaaca
     6121 tacgtcccct cttagttgtg actttgcatt gttgacagtt cagttctctg tgttgtaggt
     6181 cccagcccac cagtactcta tcaaacactg ttaggcacat gatgcagcac tgtgatctaa
     6241 tttaaataat acttttttat tatttatact actatatata atatacatca acacttttgc
     6301 tatataacct aagtgataaa cccttttttt ggttacctgt cagactctag actttggtcc
     6361 ctattgcagt taacacagtt acagaattgt aatggtgtct tgttttattt ttttgttttt
     6421 gtttcttttc cttcttttcc ctttgtaacg gaatgtgtaa atcaaagtat atacattgtg
     6481 tgttgttcct gtttcttggg atgtcatgag gagttacaca cagcattcag tgttctgtat
     6541 agacctgccc accttcgtga attcatctgt taactcctcc tcctctgaga gcgcgccagc
     6601 cacggtggct aactcccagc gtcctctctc ctgctggcta ttcttgaatt aagcacagac
     6661 tcgtccactc ggttgcttta tcatgaataa tgggcgtgac ttggtcactc ttctaccctt
     6721 cagcaaacaa gtgctagctt cttcgctgac caaaaattaa ggaaggaaaa caccattttc
     6781 aaaacgatcc accttttcac ggccgagacg gatgttagtc tacggtgctg cctcgcgctg
     6841 tcgagcctct ggaatgagcc cgctgtggaa tgaccatttc tgacttgcta tgggatgctc
     6901 acaagtaccc ttcctgtctc gttagtattg gaatcaagac tcattatttg gaatctatac
     6961 agcagtgttc ctccactgtg tttcatttgc aaaagtagag aacatgcctt ctccaccctt
     7021 ttgcaaataa atgatactcc atattggatt ctcaaaagac ttcgatatgg tgatcctgtc
     7081 aaacctagaa attgtattat cttttcatac ctgacttccc ccacttctcc tgttttagag
     7141 gaaacagcac actttcagtt acggacacag tctccatttc tagagtatgt gtgttgcagc
     7201 catccaaggt catagctggc tcagccagac tcatgccatt gttctcactg cctgtcctac
     7261 catggtgcac atggggaggg aagaagaatg tgcgtctggg aaacagctac atagactttt
     7321 tgttttttta ctactctgat tctgtaacac ttctgagttt tgttctaatt ttacagaaaa
     7381 caaacaagac cacaatgata aagcagaagc ccacaaggtt tgtggctgaa tcttagagtc
     7441 acccgacctt tcctggccaa caggtctaca tggccaaatt tatttacaag agtaataatt
     7501 tcttcagaag ccaatttttt ttctgtattt ctgtacaaaa ctgccaatat catgaacaga
     7561 aggggagaac cgtaaaggag aaagcaagtg atgttcggtg gcgtttgcat tagcctaaag
     7621 cagcggtgtg acgatgactc catcagccga gctccaggga cttggtgttg cttgggaggg
     7681 atccatacag cattttgcgt tcttcatgtg taatcatatt gccaaagaca aactacttca
     7741 tcatttattg taaataacac ttccccagac ctaccataaa gtttctgtga tgtattgtct
     7801 tccagttgca ataaaaatga ctgagttgca tcaattgaa
//
