LOCUS       NM_001399771            4905 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus forkhead box N2 (Foxn2), mRNA.
ACCESSION   NM_001399771 XM_006239736
VERSION     NM_001399771.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4905)
  AUTHORS   Rajan,S., Chu Pham Dang,H., Djambazian,H., Zuzan,H., Fedyshyn,Y.,
            Ketela,T., Moffat,J., Hudson,T.J. and Sladek,R.
  TITLE     Analysis of early C2C12 myogenesis identifies stably and
            differentially expressed transcriptional regulators whose
            knock-down inhibits myoblast differentiation
  JOURNAL   Physiol Genomics 44 (2), 183-197 (2012)
   PUBMED   22147266
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000006.1.
            
            On Jan 14, 2022 this sequence version replaced XM_006239736.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.8438.1,
                                           SRR26360190.3174709.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-145               JAXUCZ010000006.1  11818607-11818751   c
            146-696             JAXUCZ010000006.1  11797281-11797831   c
            697-791             JAXUCZ010000006.1  11789087-11789181   c
            792-856             JAXUCZ010000006.1  11783617-11783681   c
            857-925             JAXUCZ010000006.1  11778471-11778539   c
            926-4905            JAXUCZ010000006.1  11772180-11776159   c
FEATURES             Location/Qualifiers
     source          1..4905
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..4905
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /note="forkhead box N2"
                     /db_xref="GeneID:301676"
                     /db_xref="RGD:1562291"
     exon            1..145
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
     exon            146..696
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..1446
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /codon_start=1
                     /product="forkhead box protein N2"
                     /protein_id="NP_001386700.1"
                     /db_xref="GeneID:301676"
                     /db_xref="RGD:1562291"
                     /translation="MGPVIGMTPDKRAETPGAEKVAGLSQIYKMGSLPEAGEASRPKA
                     TLVGSDSTDDELTNLNWLHESSDLLTNLRLGGEGLPMVSPLYDIEGDDMPSFGPLCCQ
                     NPEKKSATSKPPYSFSLLIYMAIEHSPNKCLPVKEIYSWILDRFPYFATAPTGWKNSV
                     RHNLSLNKCFQKVERSHGKVNGKGSLWCVDPEYKPNLVQALKKQPFSSPQSASLSPHY
                     LSSVLKQSQVQTLKESDIDAATAMILLNTSIEQEMLECEKPLPLKTSLQKKRSYGSAF
                     SAPSAVQLQESHSPASSIDPKADHNYSASGVAAQRCASRASMSSLSSVDEVYEFIPKS
                     SHGGSDGSEGFHSDEETDAEDEDPLADSGYAPQALEDSTRKGQPGQKIPKQSCQEIDE
                     ELKEAAGSLLHLAGIRTCLGSLISTAKAQSQKHRKK"
     exon            697..791
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
     exon            792..856
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
     exon            857..925
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
     exon            926..4905
                     /gene="Foxn2"
                     /gene_synonym="RGD1562291"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accgcagctg ccgctgcctg ctcgcggctg ggtgtcccgg aggcggctgc tgggagccac
       61 gggagcagct gcggtgctct gccatattgt gtctggcccg gcccggcccg gccttcgcct
      121 ccccttcgcg gcggccgagc tgacgaaata taggagtaaa tgggtccagt aattggaatg
      181 actccggata agagagctga gaccccggga gctgagaagg ttgcaggact gagtcagatt
      241 tacaaaatgg ggagtttgcc tgaagctggg gaagcttcca ggccaaaggc cactctagtg
      301 ggcagtgact ccacagatga cgaactaaca aacttgaact ggcttcatga gagtagtgac
      361 cttctaacca acctcaggct cggcggtgaa ggccttccaa tggttagccc attgtatgac
      421 atagagggag atgatatgcc atcctttgga ccattgtgct gccagaaccc agaaaagaag
      481 tcagcaactt ccaagccccc ctactccttt agtcttctca tttacatggc catcgaacac
      541 tcgccaaata agtgcttgcc tgtcaaagag atttacagct ggatcctgga tcgcttcccg
      601 tactttgcca ctgcacctac aggctggaag aattctgttc ggcataatct atccctgaat
      661 aaatgttttc agaaagtgga aagaagtcac ggcaaggtta atggaaaagg ctccttatgg
      721 tgcgttgatc cagaatataa gcccaatctt gtgcaggcct tgaagaagca accgttttcc
      781 tctccacaaa gtgcttcttt atcgcctcac tacttaagct ctgttctcaa gcaaagtcaa
      841 gtgcaaactc ttaaagaatc tgatattgat gctgccactg caatgatact tttaaatact
      901 tcaatagaac aagagatgtt agagtgtgag aagcctctgc ctcttaaaac atcactgcag
      961 aaaaagagga gttacggcag cgcgttcagt gcccccagtg ctgtgcaact gcaggagagc
     1021 cattctccag cctccagcat cgacccaaaa gcagaccata actacagtgc cagcggcgtg
     1081 gcagcccagc gttgtgcatc gagggctagc atgtcttccc tgtcttctgt ggatgaggtg
     1141 tatgaattca tccccaagag tagccatggc gggagtgacg gcagcgaagg cttccacagt
     1201 gacgaggaga cagatgctga ggatgaggat cctcttgcag acagtggcta tgcaccgcaa
     1261 gctcttgaag acagcactcg gaaaggacag ccaggccaaa agattccaaa acagtcatgt
     1321 caagagatcg atgaggagct caaagaagca gccgggtcgc tgctccacct tgctggaatc
     1381 cgcacctgcc ttggctccct tataagtact gcaaaggcac aaagtcaaaa acaccggaaa
     1441 aagtagaaat gcttatagtg tggagttgtt ttaaagtgtg gcaatactct tctacttaac
     1501 tttttaccag ggatacagag ccatatcaga tggaccgctt tagctaaggg tgggggaggc
     1561 gtgccacttg tttctttcta aatatttttt ggttgctttt cttttttgtt taaacagttg
     1621 ctcttaggat catgcataat tgtaaatctg acataaagga ccccacaaca taatttctgt
     1681 gaataagtgt ctcccagatt tggaaaattt cgtatagaaa aattctcagc ctctgtctta
     1741 aacttgtagg gaaaaaatct ctttgttaat cggttaaaaa attggtaact tggattttca
     1801 tttttcttcc cattctgctg tgaactagtt actggtatct ccctgacgtg cttctctcct
     1861 gacgtagtgc aggagggtga gatgggatcg cttgtctgac cttgtttcgg ttgttctttg
     1921 ttgcagcatg agcttggcct cttctgcagc gggaagagcc taggtgccta gaaggttctc
     1981 tggtctgtgg agaatggagc agttgtaagg catgggaagg ccatctgggg atgaggctca
     2041 tctcatgact agctcctgca gtagcatctc tgcaatgccc cacctcacag ttaacgcaca
     2101 gcctcgagga cctccgccct tccccagagc actctgcaag cgcttaagct ttagctgctc
     2161 attgtcttgc ttaagtaaaa atgtctgagg atgcagccgg agagtgtcat ggagtagcag
     2221 tcgtcttgac acacgtgcag agaggcttgc atttgttttc tcaccgtagt gtagtgaagg
     2281 gagagtgtga catcagaagt aaagtaggtc actgagggcg gaactgccca agcttcgtaa
     2341 agttaaaatt aaatgtatag tgagttagat ttaaaacagt attaaatgtc ctactgagga
     2401 agatgtagag atcaatatct tcagggattt caaaatacat agaaaaactg ggtcttacac
     2461 aaaactttga gaaggcaatg taataacctg tatgtgccat taatccacgc tagaagattt
     2521 tatattacca tttcaaaagt gcattggcta agattttaaa tatttgaaca aaactgctta
     2581 tatgagacag ttttgactat agtgttaaga acagggatac taaggctata taactcatat
     2641 atattttttt acagtggtgg gagaaatttt cagaaacctt agtcttattt catgatacgt
     2701 cctgtattct agacagtgac cttgagtttt tctcacttac gtgcacacac ccttgctgtg
     2761 cacacacagg ctcaggttag cttcctgcgt tcaaatgttt ttatggctct acagcatctt
     2821 cttggacttt ttaaagtgac aaatgttttt atttttactt ctaaatgttt ttctgggcaa
     2881 tattgtcaaa taagaaaaac aaaagaatgt ttcttatgtg accacactta agctataaca
     2941 gtattgatac actcctgaat ccatgttagt tataattgaa tttggagagc caaattaatg
     3001 gaattggtgc tactaaaata tagacatttt tcttttattg ataatgcagg atgaggaatt
     3061 tggaattttt ctaattcata aatgttatct ctcagaaaac agttaaagtt tttactgcag
     3121 actgaatgaa acaccaaaca gaagtgtggt tttagtgtgg tacaagtctt gaagaggtgg
     3181 tggagttcgg atgatagcat ggacttgtgc agctcctcac cgtgcccttc tgagaggtcc
     3241 ttcacagttg tgctcaccgc attctgttcc gactgatgtc cctggccagg gggcgggctg
     3301 ttctgcaaac aggaaaatga tctgaagtag gaggaaagag ttgttctcag ctccaagaga
     3361 aggatctttt cagatttgat gtttaggcag taacttaaat tcctttccct ccttcagtgg
     3421 cctcttattt aaagcagcag ccattagcaa ggatggcgtc atgtgcctgt gcacttagaa
     3481 ctaacatgca gagtccctaa caacttgcac ttcttgtagg attcagtgtc tcactttccg
     3541 tttgctgctg tgcccaggca cccacttcaa ggggagaacc ttcatgattg ggtcccttat
     3601 gctgttcttg gagattatgt gcctatttgg tgtgcttagc ctgaagcatg gcttggaact
     3661 atccagttga ggaagtcatc ctgaatttta cgggctagaa attcccagaa aatcgcaagc
     3721 tttgtgtaat aaagacagct tagaaatcca aggacaacat acatgtttca atcatttaaa
     3781 ctggttttag ctaaggtata ctttgtctta tatcaaaata agaattttgt tggaaccaat
     3841 tccattttta atggattcct aataaaagtt gtgtcttagc actattaact ttattttcta
     3901 cattgccaag agaatcagtg tttcttgaat atgtctttga aatttgtgca atatattaaa
     3961 aatagttgat ttctttgctt tcaaatttag gatgaaatat tgcctcaatc agtagaaaag
     4021 caggggtgca tcaccccttt ccttggagcc ttttctgttc tcatagccag cacgacttct
     4081 cttaactcag atcctttgta cattgtaaag tttagcacat gttgtcaccg ctttctgagg
     4141 cattctgtaa agggttcata ctagatggtc agttaaatac acgttagcat agttgaaagc
     4201 tagagcaaga gttgagggaa tacttgtgtc ttgtagactg gaggccttct cagcagcaaa
     4261 ggctgttgtc tcagatggac agcagcttaa cgaacgccct ttgaaaacta taaggcaact
     4321 tttgaggctt tctggtttac atatatgtca tggagatttt ttattattat tttgaaatgt
     4381 ctaagttttg attaaagttt actccaatgt gttgatgatg taatcatatt tattgaaagg
     4441 caaaatagaa tgttttcatg ttaaacctgc catttcccaa gactattctt tgcatttaac
     4501 tgccagtgcc attgtcaaag ttgtactttt tttattaaac acagtgctta attttaaagt
     4561 attatgttgc catcatagtg tataaaatgt ataattgcca ttcattgtaa ctattattta
     4621 tttttaaact aaagtataag aaaacctttt gattaaagaa atttgttatt aaattgtttt
     4681 ctcttttctg atgtagcata aaaacttctg agtttaactg ccaacagatg accaaccaca
     4741 agtgaaccac ttctcagttg cagccttgct tatagcagaa acaacttata aacatttagt
     4801 ttttttatct aatctctgac tattaaaatg tttataaagt ttatttttac caaagatatg
     4861 caattcatta tgataaagtt gcagaataaa catcatttta taaca
//
