LOCUS       NM_001401050            3414 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus forkhead box L1 (Foxl1), mRNA.
ACCESSION   NM_001401050 XM_006255726
VERSION     NM_001401050.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3414)
  AUTHORS   Iascone,M., Ciccone,R., Galletti,L., Marchetti,D., Seddio,F.,
            Lincesso,A.R., Pezzoli,L., Vetro,A., Barachetti,D., Boni,L.,
            Federici,D., Soto,A.M., Comas,J.V., Ferrazzi,P. and Zuffardi,O.
  TITLE     Identification of de novo mutations and rare variants in
            hypoplastic left heart syndrome
  JOURNAL   Clin Genet 81 (6), 542-554 (2012)
   PUBMED   21457232
REFERENCE   2  (bases 1 to 3414)
  AUTHORS   Madison,B.B., McKenna,L.B., Dolson,D., Epstein,D.J. and
            Kaestner,K.H.
  TITLE     FoxF1 and FoxL1 link hedgehog signaling and the control of
            epithelial proliferation in the developing stomach and intestine
  JOURNAL   J Biol Chem 284 (9), 5936-5944 (2009)
   PUBMED   19049965
REFERENCE   3  (bases 1 to 3414)
  AUTHORS   Fukuda,K., Yoshida,H., Sato,T., Furumoto,T.A., Mizutani-Koseki,Y.,
            Suzuki,Y., Saito,Y., Takemori,T., Kimura,M., Sato,H., Taniguchi,M.,
            Nishikawa,S., Nakayama,T. and Koseki,H.
  TITLE     Mesenchymal expression of Foxl1, a winged helix transcriptional
            factor, regulates generation and maintenance of gut-associated
            lymphoid organs
  JOURNAL   Dev Biol 255 (2), 278-289 (2003)
   PUBMED   12648490
REFERENCE   4  (bases 1 to 3414)
  AUTHORS   Perreault,N., Katz,J.P., Sackett,S.D. and Kaestner,K.H.
  TITLE     Foxl1 controls the Wnt/beta-catenin pathway by modulating the
            expression of proteoglycans in the gut
  JOURNAL   J Biol Chem 276 (46), 43328-43333 (2001)
   PUBMED   11555641
REFERENCE   5  (bases 1 to 3414)
  AUTHORS   Kaestner,K.H., Silberg,D.G., Traber,P.G. and Schutz,G.
  TITLE     The mesenchymal winged helix transcription factor Fkh6 is required
            for the control of gastrointestinal proliferation and
            differentiation
  JOURNAL   Genes Dev 11 (12), 1583-1595 (1997)
   PUBMED   9203584
REFERENCE   6  (bases 1 to 3414)
  AUTHORS   Pierrou,S., Hellqvist,M., Samuelsson,L., Enerback,S. and
            Carlsson,P.
  TITLE     Cloning and characterization of seven human forkhead proteins:
            binding site specificity and DNA bending
  JOURNAL   EMBO J 13 (20), 5002-5012 (1994)
   PUBMED   7957066
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Feb 1, 2022 this sequence version replaced XM_006255726.3.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643299.64989.1,
                                        SRR21887623.533048.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-3414              JAXUCZ010000019.1  66105953-66109366
FEATURES             Location/Qualifiers
     source          1..3414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..3414
                     /gene="Foxl1"
                     /note="forkhead box L1"
                     /db_xref="GeneID:687553"
                     /db_xref="RGD:1584212"
     exon            1..3414
                     /gene="Foxl1"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..1157
                     /gene="Foxl1"
                     /codon_start=1
                     /product="forkhead box protein L1"
                     /protein_id="NP_001387979.1"
                     /db_xref="GeneID:687553"
                     /db_xref="RGD:1584212"
                     /translation="MSHLFSPPLAALAASPLLYVYSPERPGLPLAFAPATALAGPGRV
                     EPPQKPPYSYIALIAMAIQDAPEQRVTLNGIYQFIMDRFPFYHDNRQGWQNSIRHNLS
                     LNECFVKVPREKGRPGKGSYWTLDPRCLDMFENGNYRRRKRKPKPAAGSPEAKRTRVE
                     PRESEVGCDVGSPNLATARPMHEPDRSQSPAAGGTARSALLPWPGPELRDPDADRTIQ
                     DAGAVASGQLERPVHYPVHHLGSSLRPAPSGSPKGSKSKSFSIDSILAVRPKPASGAE
                     APGISKPLPGALGSSLLTASSGLPPPFNASLVFDPHVQGGFSQLGIPFLSYFPLQVPE
                     ATVLRFH"
ORIGIN      
        1 gacagagcgc gcagcggctg gggagagcgg cagatcgcag ggcagacgca cggagggctc
       61 cccaggaggg ccctggcgca gggcaaagtc cctaggactt cccggtggaa cagagacagg
      121 ctgcggtcgc catgagccac ctcttcagtc ccccgctggc cgctctggca gcctcgccgc
      181 tgctgtacgt gtacagcccc gagaggcccg ggctgcccct ggccttcgcc cctgcgactg
      241 cattggccgg cccgggccgc gtcgagcccc cgcagaagcc gccctacagc tacatcgcgc
      301 ttatagccat ggcgatccag gacgctcccg agcagagggt cacactgaac ggcatctacc
      361 agttcatcat ggatcgcttc ccgttctacc acgacaaccg ccaaggctgg cagaacagca
      421 tccgccacaa cctgtcgctc aacgagtgct tcgtgaaagt gccacgtgag aaggggcggc
      481 cgggcaaggg cagctactgg accctggacc cccgctgctt ggacatgttt gagaacggca
      541 attacaggcg caggaagagg aagcccaaac ccgccgcggg ttccccagag gccaagcgca
      601 cccgggtcga gccgcgggaa tctgaggtgg gctgcgacgt agggtcaccg aacctggcca
      661 ctgcacgccc gatgcacgag ccggatcgct cccagtcccc ggcggcggga ggcaccgcgc
      721 ggtcggcgct ccttccctgg cctggccctg agctccggga ccccgacgcg gaccgcacaa
      781 tccaggacgc aggagcagtg gcgagcggcc agctggagcg cccggtacac tacccggtac
      841 accacctggg gtcctctctg cgccccgccc ccagcggctc ccccaaaggt tccaagtcaa
      901 agagtttcag catcgacagc atcttggccg tgaggccaaa gccggcttca ggggctgaag
      961 caccggggat ctctaagccc ctgcctggcg cgctgggctc ctctctgctg accgcctcct
     1021 ccggcctacc gcctcccttc aacgcttcgc tggtgttcga cccgcacgtc cagggaggct
     1081 tttcccagct ggggattcct ttcctttctt attttcctct gcaggttccc gaggccacgg
     1141 tgcttcgctt ccactaaggc ggattagcag ctgctttccc gccctgcgat cccccacctc
     1201 cagcgagcca atgcctgtgg gcgaagtcgc cctggtctct gccctggcag agattgtggg
     1261 tttggagctg cgggccaaac tcggtgcact gagaggccac gtccatctgc tttctccgat
     1321 tctgactgaa ccatacaccg gtagctttgc agatttaaaa gaccggtcct agaggacgtg
     1381 tttgccgcac tctcagcgcc tacagcccct cattggcctc ggcggcggcg gcgttgtaca
     1441 gtgacccacc acaagttccc gctaggagct gagtctcctg ctgaccccga gggcaggact
     1501 tacagataga gcgacgactc tatgtggagg gtcaactgga ccacagaccg ctcagcgtct
     1561 ccgcgttgca caggcctcgg ctttgacatc ttgggatggg gggggagctt gcagctaggg
     1621 cgctggagat gatccgtggt cctccgaagt gtctgggaga gatgcaggcc tggttaacgt
     1681 ttacaaccaa ggttgagcaa aagcaggcag agcggaaatg cccaatatga atagataaac
     1741 cttcttccag acagggaaag actcatttat tctgggctta taaaccaggc tccccttgct
     1801 atagttagta gcttcttttc aggcaccccg tgtgtggctc ccccaccacc accccaactt
     1861 taaggtggca cagtgatgca ttccacggca tagccctcta ttggcttctg cttttctttt
     1921 tcttttttct gtgtggaggg actatgcctc aaggacaaaa tgtttttatt tccgtagctt
     1981 ttcaagatct acctttctct ccccatgaga catactttcc agaatcacag agtgaaggac
     2041 tccatgtaat cagagaggcc agggagcaag cccactcctg agtgtgggac acagcctcca
     2101 ggctcgatag gactctcttc agacatagcc tgtggaaccc caagtctgtg ttccctccac
     2161 acccctccag gggaatctgg atctcgacat tatataaaca cataagaggt gaccagagcg
     2221 cggggggggg ggggtatcaa caaagagctg actaaggcaa gcgagttagt tggttacagt
     2281 tcagtcctgc ttccaacttt ggggaaaccg ctcaggcctt tgtggtgccc ctgtttgacc
     2341 ttttggtggg ctctgcaact cagcttccgg aggaaggaaa atgctggtcc ttgaggcaag
     2401 aaagggccaa acatgaattc tagagcatag gcctacagtg aagtctccca acaactgagg
     2461 tgtgccccct cacacctgta atctcagtac tcacaagacg gaggcaggag gattgctgtg
     2521 agtttaaggc tagcttgtac cacagagtta gacctgtctc tgaccgaccg gaggaacaaa
     2581 atccaaaaca accacctccc agggcttggg caaaagtgct taagaactct caagtcccct
     2641 gctggtcagc gttgggaaag cattttgggc cgctgtgata attcggtctc atagcccaac
     2701 ccaggtccca ccaggtcagt ggggagagag gactggacag ggccctctct gaaggtcatt
     2761 gctcagactc cctggtggat ccaggtggct atgactgagc ggagtgcagc cggaaggccg
     2821 ccattggatg cctcccatgt gttcagactc tgaataaagg tttttttttt ttcattaacc
     2881 tctcactgac tggttcagag gatcatgagg agataaacat gcaatataac aggagagaga
     2941 gagctcgaga ttatacccgg gaacccagtc agcatctttg gctgtactgg gcactcttag
     3001 tttttctttc cattcttgtg tttgacatgc tgtcttgtgt gtgtttgttg attcgtgaca
     3061 actgactttt gaagaaaccg ccggtttaac gcccgctgtt ctcagaaggc agcattttag
     3121 gcttataacc caagaagcct ttgtaaggcc atcatcttta aggggcagac agatacaaga
     3181 gcaggcatct acttggtgtg tttacgcagg aaaagtctat ccagcttccg ctctcatcag
     3241 gcacgaaatc gctggagaat tggactgtga ggatgttttc tgttcagtct gtgtgttcct
     3301 ctcctcctga ggaaaggggg gggggctggg ttctcaatat ccaagcagtt gctctaatgt
     3361 cccatgtatt taattggctt agtagtataa atggtgatga tgatgatgat gatg
//
