LOCUS       NM_001107971            4874 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus forkhead box J3 (Foxj3), mRNA.
ACCESSION   NM_001107971 XM_001074052 XM_008764012 XM_233463
VERSION     NM_001107971.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4874)
  AUTHORS   Jolma,A., Yan,J., Whitington,T., Toivonen,J., Nitta,K.R.,
            Rastas,P., Morgunova,E., Enge,M., Taipale,M., Wei,G., Palin,K.,
            Vaquerizas,J.M., Vincentelli,R., Luscombe,N.M., Hughes,T.R.,
            Lemaire,P., Ukkonen,E., Kivioja,T. and Taipale,J.
  TITLE     DNA-binding specificities of human transcription factors
  JOURNAL   Cell 152 (1-2), 327-339 (2013)
   PUBMED   23332764
REFERENCE   2  (bases 1 to 4874)
  AUTHORS   Grant,G.D., Gamsby,J., Martyanov,V., Brooks,L. 3rd, George,L.K.,
            Mahoney,J.M., Loros,J.J., Dunlap,J.C. and Whitfield,M.L.
  TITLE     Live-cell monitoring of periodic gene expression in synchronous
            human cells identifies Forkhead genes involved in cell cycle
            control
  JOURNAL   Mol Biol Cell 23 (16), 3079-3093 (2012)
   PUBMED   22740631
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001107971.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760400 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-282               JAXUCZ010000005.1  138426163-138426444
            283-343             JAXUCZ010000005.1  138443449-138443509
            344-668             JAXUCZ010000005.1  138459387-138459711
            669-743             JAXUCZ010000005.1  138472612-138472686
            744-827             JAXUCZ010000005.1  138483915-138483998
            828-929             JAXUCZ010000005.1  138493530-138493631
            930-1058            JAXUCZ010000005.1  138500382-138500510
            1059-1233           JAXUCZ010000005.1  138503684-138503858
            1234-1647           JAXUCZ010000005.1  138504374-138504787
            1648-1749           JAXUCZ010000005.1  138506043-138506144
            1750-1941           JAXUCZ010000005.1  138507652-138507843
            1942-2052           JAXUCZ010000005.1  138509278-138509388
            2053-4874           JAXUCZ010000005.1  138510939-138513760
FEATURES             Location/Qualifiers
     source          1..4874
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4874
                     /gene="Foxj3"
                     /note="forkhead box J3"
                     /db_xref="GeneID:313554"
                     /db_xref="RGD:1311770"
     exon            1..282
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            283..343
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..2168
                     /gene="Foxj3"
                     /codon_start=1
                     /product="forkhead box protein J3"
                     /protein_id="NP_001101441.1"
                     /db_xref="GeneID:313554"
                     /db_xref="RGD:1311770"
                     /translation="MGLYGQACPSVTSLRMTSELESSLTSMDWLPQLTMRAAIQKSDA
                     TQNAHGTGISKKNALLDPNTTLDQEEVQQHKDGKPPYSYASLITFAINSSPKKKMTLS
                     EIYQWICDNFPYYREAGSGWKNSIRHNLSLNKCFLKVPRSKDDPGKGSYWAIDTNPKE
                     DTLPTRPKKRARSVERASTPYSIDSDSLGMECIISGSASPTLAINTVTNKVTLYNTDQ
                     DGSDSPRSSLNNSLSDQSLASVNLNSVGSVHSYTPVTNHPEPVSQSLTPQQQPQYNLP
                     ERDKQLLFTEYNFEDLSASFRSLYKSVFEQSLSQQGLMSIPSESSQQSHTSCSYQHSP
                     SSTVTSHPHSNQSSLPNNHSGLSATGSNSVAQVSLSHPQMHTQPSPHTPHRPHGLPQH
                     PQRPQHPASHPQQHSQLQPPHSQHPPPHQHIQHHPNHQHQTLAHQPPPPPQQVSCNSG
                     VSSDWYATLDMLKESCRIASSVNWSDVDLSQFQGLMESMRQADLKNWSLDQVQFADLC
                     SSLNQFFTQTGLIHSQSNAQQNVCHGAMHPAKPSQHIGAGNLYIDSRQSGIPPSVMPP
                     PGYPHIPQALNTPGTTMAGHHGAMNQQHMMPSQAFQMRRSLPPDDIQDDFDWDSIV"
     exon            344..668
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            669..743
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            744..827
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            828..929
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1058
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1233
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1647
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            1648..1749
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1941
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            1942..2052
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
     exon            2053..4874
                     /gene="Foxj3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctcgtggg ccgcgggtac cctgcggggg tgaggaggct ggggcgaggg tcccatcttc
       61 tgtcctatcc tgtccctgcg tccttctctg gcattggggc aaaggcagac ttcgcatgcg
      121 gacgtgttgc tgctgtcctg cgtgtgttgc atcctgccca cgtggtagtg tcccgtccct
      181 cccaccccgt ccattttttg cagttggtca agatgttttt ccctcgtgct ttaccccccg
      241 tctaccctgt gatttcttct gggcagcgtg gaagatgtta agattctctt tgtggccaga
      301 tgggtttgta tggacaagcc tgtccatctg taacttcatt aaggatgaca tctgaactgg
      361 agagcagcct aacatctatg gactggttac cacagcttac tatgagagca gccatccaaa
      421 aatctgatgc cacacaaaat gcacatggaa cgggaatttc taagaagaat gcactccttg
      481 acccaaatac aacgctagac caggaagaag tccaacagca caaagatgga aagcctccgt
      541 acagctatgc cagcctcatc acgtttgcaa ttaatagctc acctaaaaag aaaatgacgt
      601 taagtgagat ttaccagtgg atttgtgata actttccgta ttacagagag gctggcagtg
      661 gttggaagaa ttccatacgg cataatctgt cactgaacaa atgtttcctt aaagtgcctc
      721 gatccaagga tgatcccgga aagggttctt actgggccat agacaccaat ccgaaggaag
      781 acacgctgcc tacccggcca aagaagaggg caagatctgt agaacgggcc tcaactccat
      841 atagcataga ttcagattct ttgggaatgg agtgtattat ttcgggaagt gcctctccaa
      901 ctctggcaat caacactgtg actaacaaag taacattgta caacactgat caggatggta
      961 gtgacagccc tcggagcagc cttaacaaca gtctctcaga ccagagtttg gcgtctgtta
     1021 atttgaacag tgtgggaagt gtacatagtt atacaccggt cactaaccat ccagaaccag
     1081 tctctcaatc actaacgcct cagcagcagc cgcagtacaa ccttccagaa cgagataaac
     1141 aactgctttt cacagaatac aattttgaag atcttagtgc ctcgtttcgg agtctgtata
     1201 agtcagtttt tgagcaatca cttagtcaac aaggtttaat gagcatccct tcggaatctt
     1261 cccaacagtc ccatacttca tgttcctatc agcactctcc tagcagtaca gtgacctctc
     1321 accctcacag caaccaaagc agcctgccca acaatcatag tggcctcagt gccacaggta
     1381 gtaattcggt tgcacaggtc tcgctgtccc acccccagat gcacacacag ccctctccac
     1441 atacacccca tagaccgcat ggtttaccac agcacccaca gcgtccccag cacccagcat
     1501 cacacccaca gcaacacagc cagctacagc cgcctcactc ccagcacccc cctccacatc
     1561 agcacataca acaccatcca aaccatcagc accagacgtt agcgcatcag ccaccaccac
     1621 cccctcaaca ggtatcctgt aattctggtg tttcaagcga ctggtatgca acactcgata
     1681 tgctgaagga aagctgtcga attgccagca gtgttaactg gtcagacgta gacctttcac
     1741 agttccaagg tctgatggag agtatgcggc aggcggatct caagaactgg tccttagatc
     1801 aggttcagtt cgctgacctc tgttcctctc tgaatcagtt cttcacacag acgggcctta
     1861 tccactcaca gagtaatgct cagcagaatg tctgtcatgg tgccatgcac ccagcaaaac
     1921 cttcccaaca catcggggca ggaaatttgt acatagattc caggcaaagt ggaatccctc
     1981 cctcagtgat gccaccccct ggttatcctc atattccaca ggcgctcaac actccaggaa
     2041 ctacgatggc aggccatcac ggagccatga accagcagca catgatgcct tcccaagcct
     2101 tccagatgcg gcgctctctg cctccagatg acatccagga tgactttgat tgggattcaa
     2161 tagtgtaggc ttgtctctgc aagacagcag actccagcat cctttttgtt cagtgaaagg
     2221 aaggattaga gtccggttga gaaaacaaag cagttaccag tgctatctaa attccttttg
     2281 aagacaatca gagattctag ctgggtaact tactgctttc atccaaccca agcaagaact
     2341 acatgtttgt ctccccgcca gcaccctctg tagcttctga ctgttgtgat ttggacagct
     2401 ttttgcatat ttgtgtcagt ttgatgttga ccacaagtgc cagactgatt tttcagacag
     2461 agcctatttt gctgcgagca gtttatagat acatgtgtaa atatgtgtac aaatattact
     2521 gaaaggcttc aagttttttc taattggatt attgtatctt gaaaggaaag ttattgtcag
     2581 tttttattcc ttgttaggcc attttctgca ggatgctttc aaatgataca gagagctgaa
     2641 aggaaattgg cttcccaaag cccagtttcc tttatttaat ctccagaggt aggagcaatc
     2701 atgaattcca ccgagtaagt caagaatctg gagttggcac tctcagcagt gcagagggtc
     2761 tgtggttcct gagcaagctt gtagtgcagg gtgtgagagt gctgtacccg gtcagcgtga
     2821 ctcctcagcc gcattctgac agctctgaag tgtgtgggcg gattgaaact aggtattgct
     2881 tggctcttca aacaaatcac gtctccatac tcacttatgt atttattatt caaaagtgtt
     2941 attttaatat ttattgctac tttctgtgaa tgcacagcgc tgttggattc actagggagg
     3001 aatttgtctg agagcatggt tatttttctg gataaaagtt tacaaacaaa gacaatcaga
     3061 aacatttgtc cttctcttta ccatcactct ttaccaggta gtgtgcttcc cgccttacct
     3121 agccttcctg ctggtggaga gttaataaat agctaaataa gaattttctg gaatttgaat
     3181 cagtctattt aggtagcaag acacagaagc tggagttata cagcagtgtc cttgctgttg
     3241 ttggtaacgc tagcaggggc tgcatgcagc tccagagtcc atctgcgtca gtctcgagtg
     3301 cagtgactgc gtgacctgct gttgggtctg tgtgtgtatc cctgacaaga agcacctcag
     3361 agctttatca gttgctttgt tttgtgtcgt gtcacagctt gcatgggttg attgtgttga
     3421 ttgtgttgat ttttataatg aaagtaaaag aaaggagatt ctcctcccca cagagaatag
     3481 attgttaatt ggttctttac agagggggaa aaatctgttt taatgaggaa aatagattct
     3541 gtcaaatcaa ggagaaataa ctggtcacca gttgcttgtt attgtctctg ggctcagtaa
     3601 tgcttaatca cgttaactaa cctcagtgag tctgtggatg agtaatctct acttgaacaa
     3661 aggtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtggagagag
     3721 agagagagag agaatatgaa tatctgtgta tgtattaatg gagtattgtc ttgaatgaat
     3781 cgctgggaag ccatggtagt actgggaaaa agggagagcc tcgagcttct cttgttgttt
     3841 agtcccccac ttggcatgag aagaagctca ggtatatccc cttgggttag tgaaaatcag
     3901 aggattctca aacaatagcc aacaggcctc tctcagaagg accaggcaag atgagatgac
     3961 tccctgcaga ggaacagatt gggaaaatga ggccccagaa gtttactccg tctgttttct
     4021 agataccaca gtggctgctc cctgactagg gtcgatgctc agcagtgtgc actttaagtg
     4081 attgcagccc atgaaacagc actgcttgat gagcttacaa atcacgtgaa gctgatttcc
     4141 catttggcag ttgtttgctg atttgcagtg atccgtatgg ttatgaacgt ttaaactgac
     4201 caggaatggc accaaaggac agactcacta ctgtctgaga ttccctgttc cccaggggct
     4261 cagcaagtct gagtggccct gcagggaggg ctagctgctg ggtgcagagt ccctctagtg
     4321 gccatttctg ttgttattcg acgacacata gcaagttctc ttgggcttaa attgactgga
     4381 gactttgggg taaagactaa taaccgtaca tacacaggtg gggtgctctg tccaagagaa
     4441 gagtccgact ggcatttgtg gcagtgtttg aaatgtaaat gtgctcctgt gtgttcctgt
     4501 aaatatttaa tacgtgtctc agacgccctt tgaagtggga ggggatcgat cttgggaata
     4561 tttcaaatgg aatagagtat tttgatatgt tcattggaag ggtgacgtgt acatacttct
     4621 gttgtatata cgtggtgaca tgcattggct tttgtgcaga aacaacctgc tctctgtgct
     4681 gctgttggac agtcagtgtt ttaatgtttc tacagttttc ctattgcacg atttcatatt
     4741 ctgccaatgg tgagtggcac ccattctttg taactgttta gtgctgtaaa gacatattcc
     4801 aagtgtcatt aggattgtcg ctgccagaac tgatatgcat ggatggcact taaaataaat
     4861 atattatgac tgta
//
