LOCUS       NM_001109352            4979 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus forkhead box J2 (Foxj2), mRNA.
ACCESSION   NM_001109352 XM_001060923 XM_578387
VERSION     NM_001109352.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4979)
  AUTHORS   Li,X., Wang,W., Wang,J., Malovannaya,A., Xi,Y., Li,W., Guerra,R.,
            Hawke,D.H., Qin,J. and Chen,J.
  TITLE     Proteomic analyses reveal distinct chromatin-associated and soluble
            transcription factor complexes
  JOURNAL   Mol Syst Biol 11 (1), 775 (2015)
   PUBMED   25609649
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4979)
  AUTHORS   Cheng,B.B., Qu,M.J., Wu,L.L., Shen,Y., Yan,Z.Q., Zhang,P., Qi,Y.X.
            and Jiang,Z.L.
  TITLE     MicroRNA-34a targets Forkhead box j2 to modulate differentiation of
            endothelial progenitor cells in response to shear stress
  JOURNAL   J Mol Cell Cardiol 74, 4-12 (2014)
   PUBMED   24792364
REFERENCE   3  (bases 1 to 4979)
  AUTHORS   Chen,X., Cao,X., Tao,G., Cao,Z., Wang,S., Zhou,F., Xie,W., Zhao,P.,
            Zhang,Z. and Cui,Z.
  TITLE     FOXJ2 expression in rat spinal cord after injury and its role in
            inflammation
  JOURNAL   J Mol Neurosci 47 (1), 158-165 (2012)
   PUBMED   22246994
  REMARK    GeneRIF: FOXJ2 may be involved in the pathophysiology of spinal
            cord injuries.
REFERENCE   4  (bases 1 to 4979)
  AUTHORS   Perez-Sanchez,C., Arias-de-la-Fuente,C., Gomez-Ferreria,M.A.,
            Granadino,B. and Rey-Campos,J.
  TITLE     FHX.L and FHX.S, two isoforms of the human fork-head factor FHX
            (FOXJ2) with differential activity
  JOURNAL   J Mol Biol 301 (4), 795-806 (2000)
   PUBMED   10966786
REFERENCE   5  (bases 1 to 4979)
  AUTHORS   Perez-Sanchez,C., Gomez-Ferreria,M.A., de La Fuente,C.A.,
            Granadino,B., Velasco,G., Esteban-Gamboa,A. and Rey-Campos,J.
  TITLE     FHX, a novel fork head factor with a dual DNA binding specificity
  JOURNAL   J Biol Chem 275 (17), 12909-12916 (2000)
   PUBMED   10777590
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001109352.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.17366.1,
                                           SRR26643287.12015.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-769               JAXUCZ010000004.1  157719259-157720027
            770-1116            JAXUCZ010000004.1  157727337-157727683
            1117-1191           JAXUCZ010000004.1  157731204-157731278
            1192-1260           JAXUCZ010000004.1  157732716-157732784
            1261-1401           JAXUCZ010000004.1  157732935-157733075
            1402-1597           JAXUCZ010000004.1  157733428-157733623
            1598-2035           JAXUCZ010000004.1  157737916-157738353
            2036-2137           JAXUCZ010000004.1  157738759-157738860
            2138-2347           JAXUCZ010000004.1  157739771-157739980
            2348-2446           JAXUCZ010000004.1  157740480-157740578
            2447-4979           JAXUCZ010000004.1  157742918-157745450
FEATURES             Location/Qualifiers
     source          1..4979
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..4979
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /note="forkhead box J2"
                     /db_xref="GeneID:502886"
                     /db_xref="RGD:1565101"
     exon            1..769
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            770..1116
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     CDS             784..2535
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /codon_start=1
                     /product="forkhead box protein J2"
                     /protein_id="NP_001102822.1"
                     /db_xref="GeneID:502886"
                     /db_xref="RGD:1565101"
                     /translation="MASDLESSLTSIDWLPQLTLRATIEKLGSASQAGPPGGTRKCSP
                     GSPTDPNATLSKDEASVHQDGKPRYSYATLITYAINSSPAKKMTLSEIYRWICDNFPY
                     YKNAGIGWKNSIRHNLSLNKCFRKVPRPRDDPGKGSYWTIDTCPDISRKRRHPPDDDL
                     SQDSPEQEASKSPRGGVPGSGEASLSHEGNPQMSLQSPSSMASYSQGPGPVDGGAVAA
                     GAPGQESTEGAPPLYNTNHDFKFSYSEINFQDLSWSFRNLYKSMLERSSSSQHGFSSL
                     LGDMPPSNNYYMYQQQQQQQQQQQQQQQQQQQQQQQQQPPPQPQPPPQQPQPQQQQAP
                     TQGPSNVGGAPPLHTPSPDGCTTPGGKQAGAEVYGPPTGMAMHPPPLQHGGYHPHQHH
                     PHSHPAQQPPQQQAQSQAPINSTGFAFPPDWCSNIDSLKESFKMVNRLNWSSIEQSQF
                     SELMESLRQAEQRNWTLDQHHIANLCDSLNHFLTQTGHMPPQGGSHRPPAPSRITDSC
                     ALTSGKPEPSMNQVNSYGHPQASHLYPGPAPMYPISTQDSAGYSRPTHHMVPRPPVPP
                     PGANEEITDDFDWDLIT"
     exon            1117..1191
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1260
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            1261..1401
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1597
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..2035
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            2036..2137
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            2138..2347
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            2348..2446
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
     exon            2447..4979
                     /gene="Foxj2"
                     /gene_synonym="RGD1565101"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccagtgccc ggacctgccc ctctcccttg ggagggggga ccctccccac tcccgggaca
       61 gccagaagag accgccgcag ggcacgcggc tgtccctccc acggtggctc tagaggagac
      121 ccctagaagt cggacctgaa ggacctggag tgagacctca cgcctcaacg cacgccagac
      181 agttcgggac ttttgaggca gagagaaagg gagccatgcc tgtggagtag gcaccccgcg
      241 tcccacccgg gactcaccgc ggagaggcgt cctgacacgc acagccagga ccctccaggg
      301 aaccgccagg aattggttcc agtttgctgg agagtagaag acctcgcccc tcaacttccg
      361 tgcacccaga cagtggaccg gggccgagcc cctccgctca gatcaccaac tgacagaaag
      421 agccctcagc ccctgaaaga tccagtttgg gggggagggg gattccccca aaggggagga
      481 gacaactcct ggctgggaga ggctcctccc ctcctcccta gggtagcagg cagggtgtgg
      541 ggggtgtgcc atcttcccca ggtaggtcct ccctctcccc ctcctcctcc ttcgattcct
      601 cgtcctcagg ggactcagtt ccccgctcca gcctgggagg ctccgccagg cactggaaga
      661 gtcactgagg atgtcacctg tcacctgcca ctaaagaggg gagtccctgc aacctcaaac
      721 ttcagtacca ggtggtttcc tccagcggcc gggggaacct tggagacaga acctggaagt
      781 acaatggcct ccgacctgga gagtagcctc acctccatag actggctgcc acagctgact
      841 ctcagagcca ctattgagaa gcttgggagt gcttctcagg ctgggcctcc agggggcacc
      901 cggaagtgct cgccaggctc cccgacagat ccaaacgcca ccctcagcaa agatgaggca
      961 tcagtccacc aagatggcaa gccgcggtac agctatgcca ccctcatcac ctacgccatc
     1021 aattcctctc cagctaagaa gatgactctc agtgagattt accgctggat ctgcgacaac
     1081 ttcccctatt acaagaacgc cggcatcggc tggaagaatt ccattcgaca caacctttcc
     1141 cttaacaagt gtttccggaa ggtgcccaga cctcgggatg atcctgggaa gggctcctat
     1201 tggacaattg acacctgccc tgacatttcc cggaagagaa gacaccctcc agatgatgac
     1261 ctatcccaag actccccaga gcaggaggcc agcaagagcc cccggggagg tgttccaggg
     1321 agtggagaag cctcactctc tcatgagggc aatcctcaga tgtcactgca gagcccctcc
     1381 tccatggcca gctacagcca gggcccaggg cctgtggatg gtggagcagt ggcagcaggg
     1441 gccccaggcc aggagagcac agagggtgcc cctcccctct acaacaccaa ccatgacttc
     1501 aaattctcct actccgagat caactttcag gacctaagct ggtccttccg aaacctctac
     1561 aagtccatgc tggagcggtc ctcctcctcc cagcacggct tttcctcact ccttggagac
     1621 atgccacctt ccaacaacta ttacatgtac cagcagcagc agcagcagca gcagcagcag
     1681 cagcagcagc agcagcagca gcagcagcag cagcaacagc agcagccacc gccgcagcct
     1741 cagcccccac cccagcaacc acaaccgcag cagcagcagg cacccactca gggcccctca
     1801 aatgtagggg gtgcccctcc actgcacacc ccaagccccg atggctgtac tacaccaggg
     1861 ggaaaacagg caggagctga agtctacggc ccccccactg ggatggccat gcaccctccc
     1921 ccactgcagc atggaggcta ccaccctcat cagcaccatc cccactccca ccctgcccag
     1981 cagccaccac agcagcaggc acagagccag gcacccatca acagcaccgg ctttgccttt
     2041 cctccagact ggtgctccaa tattgactcc ttaaaggaaa gcttcaaaat ggtgaaccgg
     2101 ctcaactggt ccagcatcga gcaatcccag ttctcagagc tgatggagag cctacggcag
     2161 gcagagcaga ggaactggac cctcgatcag catcacatcg ccaacttgtg tgactccctc
     2221 aaccacttcc tcacccagac tggtcacatg cccccgcaag ggggctccca ccgaccacct
     2281 gccccttccc ggatcactga ctcctgtgct ctcaccagtg gcaaaccgga gccatctatg
     2341 aaccaagtga actcttatgg gcacccgcaa gcctctcatc tctaccctgg cccagcacca
     2401 atgtacccaa tctccaccca agactcagca ggatacagtc gcccaacaca ccacatggtt
     2461 ccccggccac ctgtcccacc tcctggtgcc aatgaggaga tcactgatga cttcgactgg
     2521 gacttgatca cttaacaaat cacagtggac atcagcctaa gacctggtgg tgaattctag
     2581 ccacggggga agaacagtcc tgtccatcct ccccaaacct gtatatagat atatagcttc
     2641 cttctgttct ctctgtcaga gaagccactg caagatgctg ccgaggataa tcctctttcc
     2701 ctcctcattc ttcgttccct tttagttctt ttattattat tctaattata ttgttattgg
     2761 ttatctgctg cccagtctcc tgccctccta ccctgggctt tgcccatttg aaatcttcag
     2821 gcctcaagat gaggccatga tagctgtcaa ggaaggcttt acattctagt tcacctttct
     2881 gtccgagaag ctcagtgctg atcccacctt ccagctctga attgtgttct ggtcctgcct
     2941 gtttcaggct ggcctgcaga ggcctcagtc agtagagggg agtctaagac actgcttggc
     3001 aaccataatg ttgcagcttt actcaatggt gctaattgtg tcctctgagc tcgcctatta
     3061 aacacccaat ctttactatg ttcggcagtc ctcatgccat gacggctgga cttggagagc
     3121 tgggctcggt ggagtcggta taacccagcg tgaggttggg tgtgcactgc catgccaaag
     3181 cacccctggc ttctcccagc cgttgctcta ggaggtttgc ttgtctgctc aggcacaaag
     3241 accactgtcc atcatagttt agcttctcgg aaacaatttc aatttaaggc attttggctt
     3301 tggaaaagga attctttctg agagttaact gactattctg catatatcaa tgaccttcca
     3361 tcatctcttc ttcttcagca aatactattt tgtcttccta aagctgtttg tccaaatcat
     3421 ccacctgtct tatcttttgt tctcccattt tctgggattc tcaaaaagac aaaaggaagc
     3481 cattctcact cctagtcccc tcatgtcgta gacatgctgt ggaaacctct ttccctcccg
     3541 ccttggcaga cctgtggtcc tgctgctggg agggtgggga agttagggag ctggcgtaga
     3601 cctgggtggg gacctgtcac tgcgcaggga gatgcttctc ttgaagttcc tgttggtggg
     3661 gtggaagctt ttgattttga caggcaatga aaactgtaag acggaaatga ctaatacaga
     3721 gtcagggctc agcgagggca aggcgcaccc gtaggctcgg agtgaggagt ctccactaaa
     3781 atgagcagcc atgacttacg gctgcagagt tcttagcacg tgtgtggctg tcttgcgaga
     3841 gagaagtcca gtctcacttc catcgtattt tcactaaacc ttctggaaca gacaaaatgt
     3901 gttgtatctt ccacagggcc aacctctgtg atttttgttc atattctctt atttatccac
     3961 gatttccgag acactgagct tcccattctc acttcccctc atcaacccct ttcctttctt
     4021 tagaaggggg cttatgtatg agactggtgg agtccagtga agtaaagggg gcaagatggg
     4081 ggcagttcac tgaagagcac tttatttctt tgtaaggaaa ataaaaggga gtataaggaa
     4141 aaagagtgcg ctccagcaca gtgtgcagtg tactggagag catctggtag ggccgatgca
     4201 tgacagacgc aatgtttccc tcccgggaga ggggtgtttc cccacacaca ccctgcctgg
     4261 tgtcctacta gacatctctt gctgttcctt ccattcaggt gtattctaca cggcttccct
     4321 ttggtttcct caaggtcttg cccttgcaca gtaccacctc ttttcctaag cacctttcct
     4381 ggtcagatct gtcccaggtt ggggggcata ggctgagtca tacttccaga tgcccctggc
     4441 ttctccatgt cttgagagcc agtctccctg gtgggcagcc tgagcagctg ccttgggctg
     4501 gagactggag ggtggcttta gggccccctg aggctctagc ctctcctggg tcaggcttgc
     4561 agaatggggc agttcaaacc tggtccccct tgggcctcag tttcccatgc cctctgtgac
     4621 atggaaagag aactacactt attttgttgg tccgatgttg ctggacatga agtatagtca
     4681 ttgctgttgt cttgggtgat gtgtgcacag ttgtaggggt cactgcctgt aagaggaaac
     4741 aggggagaca gcagaggagc aggacaaagg agaagtcatt tgtgttgatt cacctatcct
     4801 aggcttcctc tcctcaaccc catgtttctg gtttggtgag ttctttacac cacccataat
     4861 gctttgcatt ggtgcaggct gggaaggggg ggtgtatggg ctcacaactt gtttggtttt
     4921 tttttttttt tgttttgttt ttatttttgt tttgtttttg tttttttgca tgctttctt
//
