LOCUS       NM_001419549            3163 bp    mRNA    linear   ROD 14-JUN-2024
DEFINITION  Rattus norvegicus forkhead box I2 (Foxi2), mRNA.
ACCESSION   NM_001419549 XM_341949
VERSION     NM_001419549.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3163)
  AUTHORS   Clevidence,D.E., Overdier,D.G., Tao,W., Qian,X., Pani,L., Lai,E.
            and Costa,R.H.
  TITLE     Identification of nine tissue-specific transcription factors of the
            hepatocyte nuclear factor 3/forkhead DNA-binding-domain family
  JOURNAL   Proc Natl Acad Sci U S A 90 (9), 3948-3952 (1993)
   PUBMED   7683413
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Apr 7, 2023 this sequence version replaced XM_341949.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR23984936.579390.1,
                                           SRR22582424.2035204.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06680412, SAMN06680413
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-598               JAXUCZ010000001.1  199652703-199653300
            599-3163            JAXUCZ010000001.1  199653939-199656503
FEATURES             Location/Qualifiers
     source          1..3163
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..3163
                     /gene="Foxi2"
                     /gene_synonym="Fkhl5; Foxf1; HFH-5"
                     /note="forkhead box I2"
                     /db_xref="GeneID:246073"
                     /db_xref="RGD:621739"
     exon            1..598
                     /gene="Foxi2"
                     /gene_synonym="Fkhl5; Foxf1; HFH-5"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..1032
                     /gene="Foxi2"
                     /gene_synonym="Fkhl5; Foxf1; HFH-5"
                     /note="hepatocyte nuclear factor 3 forkhead homolog 5;
                     HNF-3/fork-head homolog-5 (HFH-5)"
                     /codon_start=1
                     /product="forkhead box protein I2"
                     /protein_id="NP_001406478.1"
                     /db_xref="GeneID:246073"
                     /db_xref="RGD:621739"
                     /translation="MAGFCDGLGSCSVPHGLTRAIAHPPSYGRADLGSGRRLWVNSTA
                     LSPAPYTPGPGPAPTYAAAALAVSGSLLSPSGGLAGADLAWLSLSGQQELLRLVRPPY
                     SYSALIAMAIQSAPLRRLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKV
                     PRDENDPGKGNYWTLDPNCEKMFDNGNFRRKRRRRGETSEAAVPGASRPERAALEPSG
                     LVSQDLQTSPSPTAPEAAACLSSFSTALGALAGGFSTLPDGLPQDFSLRRPPTESSRR
                     PQIPNTSPGFGPGHQTGATGFRVGHLIYSRDGTEV"
     exon            599..3163
                     /gene="Foxi2"
                     /gene_synonym="Fkhl5; Foxf1; HFH-5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgagtgaatg gagtgcccat gagcttcagc acagagccaa ctgcacctgc acctgcacct
       61 gcaccggcac cggcacaggc cggaggagag ctggacatgg ctgggttctg tgatggtctg
      121 ggttcctgtt cggtccctca tggcctgacc cgggccatcg cgcatccccc gagctatggc
      181 cgcgcggatc tgggctctgg ccggcgcctg tgggtgaact cgaccgcgct cagcccggcg
      241 ccctacacac ctggaccagg accggctcca acctatgctg cagcggccct tgcggtctca
      301 ggttcgctcc tcagcccttc aggcggtctg gcgggcgccg atctcgcatg gctgagtcta
      361 tccggacagc aggagctgtt gaggctggta aggccaccct actcctactc agcgctcatc
      421 gccatggcca ttcaaagcgc gccgctgcgc aggttgacgc tcagccagat ctaccagtat
      481 gtggcaggca acttcccctt ctacaagcgc agcaaggcgg gctggcagaa ttccattcgc
      541 cacaacctgt cactcaatga ttgcttcaag aaggtgccca gagatgagaa cgacccagga
      601 aaaggcaatt attggacgct ggacccaaac tgtgagaaga tgttcgacaa tgggaacttc
      661 agaaggaaga ggagaaggag aggggagact agcgaggccg ctgtgcctgg agccagcagg
      721 ccagagagag ctgcactgga gcccagtggc ttggtttccc aggacctgca gacctcacca
      781 tccccgactg cacctgaagc tgccgcttgc ctctccagct tctccacggc cctgggagcc
      841 ctggctggcg gctttagcac cctccctgat ggtctgcccc aagacttttc tttgcggagg
      901 ccaccaactg aatcttcccg caggcctcag attcctaaca cctcccctgg ctttggtcca
      961 ggccatcaga caggggctac tggctttagg gtggggcacc tcatttacag ccgggatggg
     1021 actgaagttt gaaggaaggc tagagactag ccaggtgctc tgttccaaca ttgagctcag
     1081 gtcctgaatc aatccctcct gggagcccca cggctgctgc ataggaaatg gtggagctcc
     1141 tgtgtggact gactgaagca ggtgcagcta gctgtgtacc catcaagcag ggggaattta
     1201 ccctcttctt aggctgtttc taggactctc caacagagtg cccccagaga gccttcttaa
     1261 aggggcgata ggttcctaaa gaagtctgga ggtctccagt ctccagagag atgtcttgca
     1321 gccggtgaga ggatgggagg aagttgagct gcaagagcaa cttccgtctc gggcccgcct
     1381 gtttcagggc agctagggaa tgagataggg gtgcagcaac cctgagatga ggacagctgg
     1441 ctgctttcca ccctcatgag attgcatatt gaggggagtc cgccactctt gtgcttaggc
     1501 tgcctagaaa gaggaacttt ccaaatttgg gaggttggga agagctgttt cagcacagag
     1561 aggtacctgg ggacactagc tccccgaccc tgtcactatg gccattaccg gtgcccctct
     1621 tacagaacct cactgtcccc agaccacaga ggggctggca cctaggaatc cctggacagc
     1681 tttgggtttg ccttacctga ccgctactcc cacccccacc cccaccccca ccccctgcct
     1741 ctctcaccct ctcagctcac agttcactaa ggctcacctg aggcaggtgg gtgaccacac
     1801 ctgttttggg tttctctcta ttcctgcctc ctcccttgcg gtggctgccc caggcaagca
     1861 gaatcctgag aacttccttt tgaatttaac tctccagcct ttccaggtct gtttattttt
     1921 tattttttat ttttgccaac ttcttttatt tcttattgga tttttttaaa tttacatttc
     1981 gaatgttatc cctttttcca gtttcccatc cataaactcc ctattccatc ccccatcccc
     2041 cagcttctat gagggtgttc ccccacccat ccacctcttt ccacctgcct gccctgacat
     2101 tcccctacac tggggcatca aactcccact gatgcccaac aaggccatcc tctgctgtat
     2161 atactgctgg agccatgggt cagtctttgg atggtggttt agtccctggg agttctggtg
     2221 gttggtattg ttgttcttat ggggttgcaa acccctccag ctccttcaat cctttctcta
     2281 atgcctccat tggtgacccc attctcagtt cagtggttgg ctgtgagcat ctgcctctgc
     2341 atttgtcatg ctctggcaga gagtgactgg cagggaacca aagtcacttg aatctctgtg
     2401 ctttctggag ctccttaagg tcccagctag ctgttatgaa tctttgtgtc atctggaatt
     2461 ccctgaggac ctggccactg gagacagggg ttcatacaca caccactcta ggacagatag
     2521 caggagtaca ttccctggaa gagagaagag aactaaccaa cccttaagcc agatcagtgt
     2581 tgccctttag tgagaccagc caacttgcac caacatggca ggtttgcctt ggcttatccc
     2641 aaatctgcct gctgggagag ccgtggtcct ctgaacctgc agtgtcctga atggagagag
     2701 catggggagc tctggctcct ggtttctgga tgctcttcct acctggtgtg ctgtggtacc
     2761 tcagtggctg ccatgaggag gtgacctgtg tactaggtgg tggccatagt gttgcttaac
     2821 caagcttaca gccaacccat acgctctctc caaatgtaat tcgattttta aaattcagga
     2881 aaatataaat tatttaaaat ataaataaaa ggtttgagac cgattttaat agaataacac
     2941 actaaaaagg ggcagcccac tttacactct atctttgtaa gaaaattgaa aagaaaaaat
     3001 aactagatac cacaagaaga aatacagtgc aacttgagtc agggcttcca caaaagtgga
     3061 tgccatacgg gtgtcatggc tgtgtgacag ctgcatcatg ggagcttgtg tttatgtttc
     3121 atttctgaca ctgaatgttc tattaaaatc gagaaaggaa aaa
//
