LOCUS       XP_001055972             432 aa            linear   ROD 22-FEB-2024
DEFINITION  LOW QUALITY PROTEIN: forkhead box protein D4 [Rattus norvegicus].
ACCESSION   XP_001055972
VERSION     XP_001055972.2
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_001055972.6
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 2, 2010 this sequence version replaced XP_001055972.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..432
                     /product="LOW QUALITY PROTEIN: forkhead box protein D4"
                     /calculated_mol_wt=46660
     Region          103..198
                     /region_name="FH_FOXD4-like"
                     /note="Forkhead (FH) domain found in Forkhead box protein
                     D4 (FOXD4) and similar proteins; cd20048"
                     /db_xref="CDD:410822"
     Site            order(104..109,126..127,145..146,148..150,152..154,157,
                     163..168,170,172..177,194..198)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:410822"
     Region          213..>297
                     /region_name="flhF"
                     /note="flagellar biosynthesis protein FlhF; PRK06995"
                     /db_xref="CDD:235904"
     CDS             1..432
                     /gene="Foxd4"
                     /coded_by="XM_001055972.6:31..1329"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 3 bases in 2 codons; substituted 2 bases at 2
                     genomic stop codons"
                     /db_xref="GeneID:252886"
                     /db_xref="RGD:621716"
ORIGIN      
        1 mnlaraghll stpppsplss dpeeveidvl aeeedgdqte ddggeeshkc lerslqrpga
       61 rtlarrsawd cgdlsnssgf lrkfraprtr attttadgpq pakppysyia litmailqsp
      121 hkrltlsgic afisgrfpyy rrkfpawqns irhnlslndc fvkiprepgh pgkgnywsld
      181 pasqdmfdng sflrrrkrfk rhhpppgghp hcpfpppavp atvqvsqpgl llrysappqp
      241 nlavhpaspp rsrpcaplhp yplrylllaa payadeprka egadpatsla ipalqpapgs
      301 qpwegdqgsg srsrrgcasf tiesimqgvt gggtgsaqsp pfapwsychl lqhppcllhp
      361 qaasplfhvp aasrtvlqqq qprpppxqqe ehhcaircsp gkgkrlgrhl sasedxrltt
      421 xlsgregtlp af
//
