LOCUS       XM_233144               5825 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus focadhesin (Focad), transcript variant
            X1, mRNA.
ACCESSION   XM_233144
VERSION     XM_233144.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427695.1.
            
            On Jan 21, 2021 this sequence version replaced XM_233144.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5825
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5825
                     /gene="Focad"
                     /note="focadhesin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 29 ESTs, 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 107 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:313346"
                     /db_xref="RGD:1311849"
     CDS             108..5504
                     /gene="Focad"
                     /codon_start=1
                     /product="focadhesin isoform X1"
                     /protein_id="XP_233144.5"
                     /db_xref="GeneID:313346"
                     /db_xref="RGD:1311849"
                     /translation="MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGASEKIHQSTNQ
                     TAALNLLWEKSCSDNVVVRTACSEGLVALVAQGHAEFSYVLNGILNLIPSARNMSGLI
                     KALMKLLQMQASREGQGGAKDLQDLYSIRNPPQPLITVLEHRPDCWPLLLQQLTAFFQ
                     QCPERSEASCVQIMAPFLWYLYCEPSQLQEYAKLRLSLLKVLLQPRGVCEEAQPSVLE
                     QQILQLCCNMVPCLQMKDLMQTTEMTLFVEEVYLSLLRHPAFWKRQLTQLTVQLLCIC
                     EVSLKTTGECSSLIQLLERSVELLGEDFPVKLVIIGIALILLQTPASQQKPVLNLTLK
                     LLSLTEGQRIPKASLLLLVPLLQILSSTALEDCLATGEEGPSRQQLALSLLEVLQREC
                     HGDDRHTISCRLAFPVSSMYGSVFTACRILEVMGEASAASDWLAAVESLLPATTVIPP
                     HVFLLLAHLLVEDGGQNLQQILKVTTQLAQADSSQVPHLIPVLMFKLGRPLDPVSYNH
                     ILYTLPTLGVHKVCVGQILRVIQLLGTTPRLRAVTLRLLTSLWEKQDRVYPELQRFMA
                     MSDAPSLSVGKELQWEKLIAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQAS
                     PAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDMRPLILKTLSELFSLVPSLTVNTV
                     EYENFKVQVLTFLWTHTQNKDPIVASAAYKSLSHFSAGEHTILHLPEKIRPEMPVPDE
                     LDEEESVDLSIPGSCYLRLLTITAPSILPALEEFFTSLVRQEMVNMPRGIYHSALKGG
                     VCSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGMLFCYDVAMYQSKDGKPLNRLMA
                     SRGRTFKQTTLALVHEVHVQLSEWHRAIFLPQAWLAYMTRAYHAILQGRIAELELQLQ
                     HGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPVVKGNALLALSSLAVVVSKHE
                     ASLSSESDGVLEVQPNFLPVKEWVSMVLNTVLVIVDSHYHPRGQLFTCFYHKSYSGEN
                     TASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQAVQIHMGL
                     ALGMFLSRLCEEKLSDMSGQQMSLLLMKSLDALESCCFDPSLEHNTGCILGVGLALSL
                     MSHSSHTESRVHVAASLRKLSAYLDESGSQSRTFQEVLAYTLSCVCTSAFSAGIIEAV
                     EAEETMTKLQLLVENNQQTSGFALALGNLVYGLSVCGHGKAEDLGNRLRPSWIKIVLS
                     EGAPTMLCLAALHGLVALVGSDVDVMQFQSEAIHNSQFQARLNEVIRTLTEVISVSGV
                     IGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFITGGKKGPEA
                     VPPSLLKVVMKPIATVGENYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVSQAPSS
                     QSAAALLGLWVMPPLVHGLSLNIKKYLLVSMPLWAKHVSDEQIQGFVENLMVAVFKPA
                     SQPCHPEMCPSALQGLSQAMKLPSPSHHLWSLLCDATGRIFDLLPNRIRRNDLELYIS
                     IAKCLSEMTDEGANQVSQITKENIEKAAFVKLYLISQGRLPLMSLTDLLTAAMQHPSK
                     ETLAWMILHSLYQARIVNHTNTGVLKRLEWLLELMGYMRNIAYQSASAQNVPPAEALD
                     FLMLIFAAAVVAWADHEAPLLLGLSASWLPWHQENGPGGPAAALLGRSPMHRVTVQEV
                     LTLLPTSMLLLLQKEPWKEQTQKFIDWLFSIMEIPNEAFAATSKDLLKATLLSLRVLP
                     EFKKKAVWTRAYGW"
ORIGIN      
        1 ccgcctcccg gtggtggagg cggtccgcgg gccaggtcag gctggggaac gggctgcgcc
       61 tgtggcagaa gtgaggaact gtgtgtatag ctgtgagaga agcaaatatg tcagatgata
      121 tcaagaaaag gtttgatttt ccgaattccc ttatccagtc ccaggctgta ggtcatctta
      181 ttgctgctgt cttaaaagaa catggcgctt cagaaaagat acaccagtcc acaaaccaga
      241 ctgctgcctt gaacttgctg tgggagaaga gctgcagtga caatgtggtg gtccgaacag
      301 cctgcagcga gggactggtg gcacttgttg ctcagggtca cgcagagttc agctatgttc
      361 tcaatgggat actcaacctg attccttctg ccaggaatat gtccggtttg ataaaagccc
      421 ttatgaaatt attacaaatg caagcatcca gggaaggaca aggtggggca aaggatcttc
      481 aggacctata ttctatcaga aatcctcctc agcctttgat caccgtgctt gagcacaggc
      541 ctgattgctg gccactactc ctgcagcagc tgacagcttt tttccagcaa tgccctgaaa
      601 ggtcagaagc ttcatgtgtc caaataatgg caccatttct gtggtatctc tactgtgaac
      661 catcccagtt acaagaatat gctaagcttc gactgtccct gctcaaagtc ttgcttcagc
      721 ccagaggtgt ttgtgaggaa gcacagccat cagtgttgga acagcagatc cttcagctgt
      781 gctgtaacat ggttccgtgc ttgcagatga aagacctgat gcagacaaca gagatgacgc
      841 tgttcgtgga ggaagtatat ctaagccttc tgcgccatcc tgctttctgg aagagacagc
      901 ttacccagct gaccgttcag ttgctgtgca tctgtgaagt cagcttaaag acaactgggg
      961 aatgctcatc tttaattcag cttttagagc gcagtgttga acttcttggg gaggattttc
     1021 ctgtcaaatt ggtcattatt ggaatagctt taatacttct acagactcca gcaagtcagc
     1081 agaagccagt attgaaccta actctgaagc tcctctcgct tactgagggt cagagaatcc
     1141 cgaaggcctc tctgctgctc ctggtgcctc ttctgcagat tctgtcctcc actgccttgg
     1201 aagactgtct ggccacgggt gaggaaggcc cctccaggca gcagttagcc ctcagtctgt
     1261 tggaagtgct acagagagag tgtcatggcg acgaccgaca cacgatctcc tgcaggcttg
     1321 cttttcctgt gagcagcatg tatggctcag tcttcactgc ctgcaggatt cttgaagtca
     1381 tgggagaagc gtccgcagcg agtgactggc tggctgcagt agagtccttg ctccctgcca
     1441 ccacagtgat ccccccacat gttttcttac tgctggctca cctgcttgtt gaagatggag
     1501 gacagaatct tcagcagata ctgaaggtca ccacacagtt agctcaagca gattcctctc
     1561 aggtaccaca tctgattcca gttctgatgt tcaaattggg gagaccctta gaccctgtat
     1621 catataatca tatattatat actttgccca cacttggtgt tcacaaggta tgcgtagggc
     1681 agattctgcg ggtgattcaa ctgctgggga ccacaccacg actaagagct gtcacgttac
     1741 gcctgttgac atctctgtgg gaaaagcagg atcgtgtgta ccctgaactg cagcgcttca
     1801 tggccatgtc tgatgcaccc tctctctctg tgggcaagga gctgcagtgg gagaaactga
     1861 ttgcaaaagc tgcatccatc agagacatat gtaaacagag gccctatcag catggtgcag
     1921 acatgctggc agccatttct caggtgttga acgaatgcac caagcctgat caagcttctc
     1981 cagctgcttt ggtgttacaa ggtcttcatg cactctgcca ggctgaggtt gtctgtattc
     2041 gctccacatg gaatgctctc tctcccaagt tgagctgtga catgagacca cttatattga
     2101 agaccctgag tgaactattc tctctggttc cttccttaac agtcaataca gttgaatatg
     2161 agaattttaa agttcaagtc ctcaccttcc tctggactca cactcaaaac aaggatccca
     2221 ttgtagcaag tgccgcatat aaatctctgt ctcacttcag tgctggagag cacaccattc
     2281 ttcacctgcc agaaaagata aggccagaaa tgccggttcc cgatgagttg gatgaggagg
     2341 aatctgtgga cctttccatc cctggctctt gctatctccg actgctgacc atcactgctc
     2401 cttcaatttt accagctttg gaagaattct tcacgtctct tgtgagacaa gagatggtga
     2461 atatgccccg tgggatatac cactcagcat tgaagggagg cgtctgctca gaccaaggga
     2521 agacagtagc aggaatcccc aactttatat tgaagacata tgaaacaaac aagcaaccag
     2581 gactgaaacc cggtctggca ggtggcatgc tgttttgcta tgatgtggcc atgtatcaga
     2641 gcaaagatgg taagccactg aatcggctga tggccagtag agggcgaacc ttcaagcaga
     2701 caacactggc ccttgttcat gaagtccacg tccagctctc agaatggcac cgtgcaatct
     2761 ttcttccaca ggcttggctt gcatacatga ctcgagctta ccatgccatt ttacagggac
     2821 ggatagcaga gctggagctg cagttgcaac atggcaagga gggccccgag gaggtgcagt
     2881 acaaacgaag cacggcctgg ctctgggtca gagacatgct gacagatgag atcaccaaga
     2941 cagctgcgaa agagagtcca gtggtcaaag gcaatgctct gttggcctta agcagccttg
     3001 ccgtcgtggt gtccaagcat gaagccagcc tttcctcaga gtctgatgga gtcctagagg
     3061 tccaacctaa tttccttcca gtgaaagagt gggtttccat ggtgcttaat actgtcctgg
     3121 tcattgtgga tagccattac caccccagag gtcaactgtt cacctgcttt tatcataagt
     3181 cctattctgg cgagaacacg gcaagtgcta ttgcgcgctc tgccgccgcc acggctttgt
     3241 ctctcctcgt gccggttttc attatctctt gcaaagagaa ggttgaggaa atcctgaaca
     3301 tgctgactgc caggttacct gggaaaccaa gtgctgatga atctcaagcc gtgcaaatcc
     3361 acatgggcct tgccttgggg atgtttctct ctcgcctgtg tgaggagaaa ctcagtgaca
     3421 tgtctggcca acagatgagc cttcttctga tgaagtcctt ggatgccctg gagagctgct
     3481 gtttcgaccc cagtcttgaa cacaacaccg gctgtatact gggagttgga cttgccctgt
     3541 ccctcatgag ccacagcagc cacacagagt cacgcgttca tgtggcagca tccctgcgga
     3601 agctgtctgc ctacctggat gagagcggga gccagagcag gacatttcag gaggtccttg
     3661 cctacacact tagctgtgtg tgtacatcag cgttcagtgc tggcattatt gaggctgtgg
     3721 aggctgaaga gactatgacc aagctccagc tgttggtgga gaacaaccag cagacttcag
     3781 gctttgcact ggccttagga aacttggttt atgggttgtc tgtgtgtgga catggaaaag
     3841 ctgaagactt gggcaacaga cttcgcccca gctggattaa aattgtcctg tcagagggtg
     3901 cccccaccat gctctgtctg gcagcccttc atggcctggt ggcactggta ggctccgatg
     3961 tggatgtcat gcagttccag tcagaagcca tccacaactc ccagtttcaa gcaagactta
     4021 atgaagtcat tcgaacctta actgaggtca tcagtgtctc aggggtgatt ggtcttcaat
     4081 caaatgcaat atggctgcta ggacatcttc atctatccac cttgtcttca aatcaaagca
     4141 gaacttccgt tcctaccgac tacagctatt tgcctgaagg cagttttatt agagcagcca
     4201 ttggcttctt catcacagga ggaaaaaaag gccctgaagc tgtgccaccg tcccttctca
     4261 aagtagtgat gaaacccata gcaactgttg gggaaaacta ccagtaccct cctgcaaact
     4321 tagccgcact cctctctcca cttatgaggc taaactttgg cgaggagata cagcaactgt
     4381 gccttgagat tgctgtgtcc caggcaccgt cgtcacagag tgcagctgca ctgctgggct
     4441 tgtgggtgat gccgccgctg gtccacggtc tgagtctgaa tatcaagaaa tacctcctgg
     4501 tatctatgcc tctgtgggca aagcatgttt ctgatgaaca gatccagggt tttgttgaaa
     4561 atctgatggt ggcagttttt aaaccggctt cccaaccttg tcatcctgag atgtgcccaa
     4621 gtgccttaca gggtctgagc caggccatga aactgcccag tccttcccac cacctctgga
     4681 gtctgctctg cgatgctact gggagaattt ttgaccttct gccaaatagg attcggagaa
     4741 atgatctcga gctgtacatc agtatagcaa agtgcctctc agagatgacg gatgaaggtg
     4801 ccaatcaggt ttcccagatt actaaggaaa acatagaaaa ggctgccttt gtcaagctgt
     4861 acttaatctc tcaaggacga ctcccgttga tgagcctgac tgatttactc actgctgcta
     4921 tgcaacaccc ctcgaaggag actctagcct ggatgatcct gcacagctta taccaggcac
     4981 gcattgtcaa tcacaccaac acaggtgtac tgaagagact ggagtggctc ctggagctga
     5041 tgggttatat gagaaacatt gcttaccagt cggcgtctgc tcagaatgtg cctcctgcgg
     5101 aggctttgga cttcttgatg ctgatatttg ctgctgcagt ggtagcatgg gcagaccatg
     5161 aggcccccct tctccttggc ctcagtgcca gttggttgcc atggcaccag gaaaatggcc
     5221 ctggtgggcc agcagcagcc ttacttggca ggagtccgat gcacagagtc actgtgcagg
     5281 aggttctcac tctcctcccc acgagcatgc tactgctcct gcaaaaagag ccatggaagg
     5341 aacagaccca gaagttcatt gactggctgt tcagcatcat ggaaattcct aacgaagcct
     5401 ttgcagccac gtccaaggat cttttgaaag ccaccctgct gtccttgaga gttctcccag
     5461 agtttaagaa gaaagctgta tggacccgag cgtatggctg gtgacagtca caggaaccaa
     5521 caatattctc cactgaagga gacagaccag agaaactgaa gctttctagg actgctatct
     5581 gagatcagtg agacgtggtc ctcaccattg gaggccatga aaagatggct acaaactgac
     5641 atctcaccat gtgtgtggcc aggggtgcat tccttgcgca tctggacatt tgaaactgaa
     5701 atagaacatg cctcctatat ggccagaatt cattgtaaaa gtcttctttt ctttgtgaaa
     5761 actggagtat attttctctc ccttaagttc tagcaaaata aacttatgag ttttgtgcaa
     5821 tgtga
//
