LOCUS       XM_039113090            2334 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus fibronectin type III domain containing
            4 (Fndc4), mRNA.
ACCESSION   XM_039113090
VERSION     XM_039113090.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 12, 2024 this sequence was replaced by
            NM_001427209.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2334
                     /gene="Fndc4"
                     /note="fibronectin type III domain containing 4; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, 1 long SRA read, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 189 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100910821"
                     /db_xref="RGD:6496095"
     CDS             395..1099
                     /gene="Fndc4"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     4"
                     /protein_id="XP_038969018.1"
                     /db_xref="GeneID:100910821"
                     /db_xref="RGD:6496095"
                     /translation="MSSGCLWAPPANSVETMASLMPLSPYLSPTVLLLVSCDLGFVRA
                     DRPPSPVNVTVTHLRANSATVSWDVPEGNIVIGYSISQQRQNGPGQRVIREVNTTTRA
                     CALWGLAEDSDYTVQVRSIGLRGESPPGPRVHFRTLKGSDRLPSNSSSPGDITVEGLD
                     GERPLQTGEVVIIVVVLLMWAAVIGLFCRQYDIIKDNDSNNNPKEKGKGPEQSPQGRP
                     VGTRQKKSPSINTIDV"
ORIGIN      
        1 tgcagcggag cgcgcggggc cagctctgca gaaggcggcg gctggctggc cgggacggtc
       61 acatcccgct gcaggggacc agcttcggcc gccgcactgt cctctgcacc ggggacgcag
      121 gccagctgcc aggcctcgcc ggcaacgccc cccaccgctc agagccagac caagcggggc
      181 ccttgggaag gctgggggcc ccgcagaccc gccgcccgcg gccactccgc ctctgccctc
      241 tctgcccgaa gctcggccgt cgctgcccgt cttggcgggc ccgtgtcggg atggggtagg
      301 gccagcacca gtctggcgat gggccgccct ctgggcaccg agcagccccc cgaggcctga
      361 ccgaccacga ggacccggga ggatcctcgc ctggatgtca agcggatgcc tctgggcccc
      421 tccagcaaac tcggtggaaa ccatggcttc tttgatgcct ctttccccat atctgagtcc
      481 cacggtcctc ctgctggtca gctgtgacct gggttttgtg cgagcagacc gacctccctc
      541 tcctgtgaat gtgacggtca ctcatctcag agccaattcg gccactgtgt cctgggacgt
      601 cccagaaggc aacatcgtca ttggctactc tatttcccag caacgacaga atggccccgg
      661 gcagcgtgta atcagggagg tgaacaccac caccagggcc tgtgctcttt ggggcctggc
      721 cgaagacagc gactatacag tgcaggtcag gagcattggc cttcggggag agagcccccc
      781 aggaccccgg gtgcacttcc gcaccctcaa gggttctgac aggctgccct ccaacagctc
      841 cagcccaggt gacattacag tggagggtct ggatggagaa cggccattgc agacagggga
      901 agttgtcatc attgtggtgg tattgctcat gtgggctgct gtgatcgggc tattctgccg
      961 tcagtatgac atcatcaagg acaacgactc taacaacaac cccaaggaga aggggaaggg
     1021 gcctgaacag agtcctcagg gaaggccagt ggggaccaga cagaaaaagt ccccatccat
     1081 caacaccatt gacgtttgag tgaatgaaga accagaacca gaagagagga tacactcact
     1141 gtatgactct gtgggggtga ggcagggcca gggaaagcct atgatggtga tttgcttgag
     1201 actcccacaa ggcagtacgc tcccagaatc tcaggctggt acccatcctc tttccactgt
     1261 gagcagggcc agaatgtagg tctgatagac tctgtaccct tgggcctgga agtggatatc
     1321 aaatagagca tctcctccca tcccccaggt ccaggggaga atcacttatt caaccctatt
     1381 ccactaggtc ctgaataggg gccccatgtc acctgtatca ggactattgg cacccactag
     1441 ctgcccctac agcttgcctc tgggccccgg agaggggtgt ttctatcagt gttgccctcc
     1501 tccagtaaga acgatctggg cctagaggca gcgggtgtac tgcactattc caatgtcttc
     1561 cacggagcct ccggtgctcc tccctcacct ggcagtccct ccagctgtag gtgatctcac
     1621 ccctgggacg ttttttccaa taaaggttct tggacaaact ggaactgact ggtatacggt
     1681 atggtatgct gaagacatct ctacaccttg tcagttctcc tcacgcctcc accgacctga
     1741 aaggacagag tcattctaag atgtttgcat caatgaatcc atgttttcat ctaggatggg
     1801 cagagaaaga caaaagggaa tgggggaatg gaaaaccagc ggcctccctt ctttgtcttt
     1861 gatgaatgag aagagagaaa aatgagaagt cacagatgtt ttcataccaa cggaaaccag
     1921 gccatgtcac ataaaagggc cagtagtttg tttttttttt tttttttttt tttttagttt
     1981 ttgttcagga ccttgtgtgt actaatcaaa tgttctaccc ttgtgttata taaccaattc
     2041 cttccccact cttttgactc caccactcac tttgaggaaa tggtccgaag ggctgagttg
     2101 tcttgggaac tgacgggaga gcagtcacca ttaatgtgcc cttggtgcca tgtgtcctca
     2161 ccccgggcac accattgcct cttcttcgtt ttcttcttca tctatgtctc tgttcactca
     2221 aagttaacaa taattgtaat ccataaatga gtttatattt atactctaac atgtccagag
     2281 gattctagaa ataaagctga ggggtttgga tgcccctgtc caaaaaaatt ataa
//
