LOCUS       NM_001191722            4494 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus fibronectin type III domain containing 3C1
            (Fndc3c1), mRNA.
ACCESSION   NM_001191722 XM_228509
VERSION     NM_001191722.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4494)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000021.1.
            
            On Jul 17, 2010 this sequence version replaced XM_228509.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1120408.1,
                                           SRR26360190.1600438.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JAXUCZ010000021.1  75619116-75619193   c
            79-192              JAXUCZ010000021.1  75618300-75618413   c
            193-268             JAXUCZ010000021.1  75617883-75617958   c
            269-345             JAXUCZ010000021.1  75597218-75597294   c
            346-616             JAXUCZ010000021.1  75595409-75595679   c
            617-1336            JAXUCZ010000021.1  75588745-75589464   c
            1337-1392           JAXUCZ010000021.1  75586703-75586758   c
            1393-1532           JAXUCZ010000021.1  75586265-75586404   c
            1533-1592           JAXUCZ010000021.1  75584371-75584430   c
            1593-1731           JAXUCZ010000021.1  75583808-75583946   c
            1732-1785           JAXUCZ010000021.1  75583236-75583289   c
            1786-1907           JAXUCZ010000021.1  75582381-75582502   c
            1908-2082           JAXUCZ010000021.1  75582120-75582294   c
            2083-2169           JAXUCZ010000021.1  75581039-75581125   c
            2170-2308           JAXUCZ010000021.1  75580743-75580881   c
            2309-2380           JAXUCZ010000021.1  75580058-75580129   c
            2381-2499           JAXUCZ010000021.1  75579303-75579421   c
            2500-2602           JAXUCZ010000021.1  75579077-75579179   c
            2603-2706           JAXUCZ010000021.1  75578555-75578658   c
            2707-2820           JAXUCZ010000021.1  75578230-75578343   c
            2821-2970           JAXUCZ010000021.1  75577101-75577250   c
            2971-3245           JAXUCZ010000021.1  75571831-75572105   c
            3246-3458           JAXUCZ010000021.1  75571312-75571524   c
            3459-3625           JAXUCZ010000021.1  75570795-75570961   c
            3626-3747           JAXUCZ010000021.1  75563687-75563808   c
            3748-4494           JAXUCZ010000021.1  75562242-75562988   c
FEATURES             Location/Qualifiers
     source          1..4494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq22"
     gene            1..4494
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /note="fibronectin type III domain containing 3C1"
                     /db_xref="GeneID:317224"
                     /db_xref="RGD:1563846"
     CDS             1..4083
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /codon_start=1
                     /product="fibronectin type III domain containing protein
                     3C1"
                     /protein_id="NP_001178651.1"
                     /db_xref="GeneID:317224"
                     /db_xref="RGD:1563846"
                     /translation="MEHQLAPILSEIPPTGPVINGDPMCQVESFLLDPNAMAVYSNYS
                     QIMTQPKMYNNWTCPQYWSQIVFIQVNPGEILTIKADDGSIQNIQGPADVPLIAPSGN
                     LPPIYLPPGYISQVVEENGIQKIIIVPQTLDYHMPVTGPVQHPFVAAPLLTYPQTPQL
                     LYSPVQGEFPISSYIQEPQQIPSLPLPPPLPLLPPAAAFIFQEHLETYPHGRVNHNLF
                     DERTVTIGEYSKKKIRDRQLGEHKISSTFSDTPLLLNKVIDISAPSGTLCPYTVDTAP
                     STNTDTSPLDTYSLNTVLKACTTDSTPRNMADNIPDTNTTDRNTSSGHSPSNSTSNAF
                     CSDNSNDITSPSINTYDLVTSDETHEPPDAKSIPSYTSESTCNALITENAQTCSSNKD
                     DLRPSGAATISNNTRAYTEDNPGETETNMGAGDSKQISDENQRKRHSSNASVREHNTE
                     YGTQPCCSNIEKPVVSNIQTRSATVSWALNSAEKYDINSPMKFELTLSSSGKNGNYKN
                     IYTGDGVTVVLHDLQPCTVYFLRVAIIRDGEHRNVSEVVSFTTPGCEPDPPLAPTLIS
                     RTKNSLNLQWKGCNDNGSKISSFLLEWDEGIGEDFKSCYTGPLKQHKLFKLSPSTKYS
                     FRLAAKNHFGCSNFSETAVFYTSGNTPSAPLPPKLKEAGVYSLSLEWCAPTNPNPNDT
                     LTYVLEMEEAKSGLGFKPKYNGEDLSCTVKNLQRNTTYKFRIFAYNLEGRSNPSGEVK
                     YTTRPARPGCPNKPHVVGTIHARQVTIGWDLPKDNGGMNISSYSLEVCENSDAGNLWK
                     IIYSGTLQEFLYDDLQPGTTYKLRVFCTSPAGQSRPSDVLTIQTPALPPESCSSQPLH
                     SKSKGRDANLLDNRSVNGKSEAPVRGKKAKGPHDKKECPSSEKTCALGSQSMECGSVP
                     ARHPPSQCGTPVLTCKGPTCVIVSWEIPKCNGAEIIDYRLQWGQVEESMHLIYTGPCL
                     RYEVKGLIPATTYFCRVQAVNIVGVGMFGGTAKVTTPGTVPAMVPMLQEVENKVPAKQ
                     SSTCIAIRWEEPDCHGSQITGYNIEYGDKKIVTVKRVTEYVLKNLQPNTTYRIRIQAI
                     NHYGLSPFSPSIRCKTKPLPPEPPQLNCVVYGHQSLRLKWGTVSSKKSLANFISYNLL
                     MEDRSGRFSVIYRGTDVTHKVQKLTEYTQYKFKIQACNEAGEGPESDIYTFTTTKSPP
                     TALKAPKVHPLNNNCCEIKWETLEPIKGDPIVYCVQVTTGKKAHQIYKGPNTSFSFSN
                     YHANSRYRFKVCAGRQYETSNGLQELWGPYSPSALFSTYKHHSGHGKGSGGKGKGNHS
                     EKGEKCKTEMSDDTFVLTLLIGFALIAVLCAVAVQYFLIN"
     exon            1..78
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            79..192
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            193..268
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            269..345
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            346..616
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            617..1336
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1392
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1532
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1533..1592
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1593..1731
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1732..1785
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1786..1907
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            1908..2082
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2083..2169
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2170..2308
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2309..2380
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2381..2499
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2500..2602
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2603..2706
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2707..2820
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2821..2970
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            2971..3245
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            3246..3458
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            3459..3625
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            3626..3747
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
     exon            3748..4494
                     /gene="Fndc3c1"
                     /gene_synonym="RGD1561693; RGD1563846"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaacacc agcttgcacc tattctttct gaaatacctc caacagggcc agttatcaat
       61 ggagatccca tgtgccaggt ggagagtttt cttctggacc ccaatgccat ggcagtgtat
      121 tctaattatt cacagattat gactcagccc aagatgtata acaactggac ttgtccccaa
      181 tactggtctc aaattgtatt cattcaagtt aaccctggag aaatccttac cataaaggct
      241 gatgacgggt ccattcagaa cattcaagga cctgcagatg tacctctgat agcaccatct
      301 ggtaatctgc caccaatata ccttccccct ggttacatat ctcaggttgt ggaagaaaat
      361 ggaattcaaa aaattatcat tgtacctcag acacttgact atcacatgcc cgtgactggg
      421 cctgtgcaac acccctttgt agcagcacca ttgctcacat acccacagac ccctcaactg
      481 ctgtattctc cagttcaagg ggaattccca atatcttctt acatccaaga accacagcag
      541 atcccgtcac ttccacttcc accaccactg ccactgctac caccagcagc agcatttata
      601 ttccaggaac atcttgaaac ctatcctcat ggaagagtga atcataacct atttgatgaa
      661 aggactgtaa cgattggaga atattcaaag aagaaaataa gggatcgcca acttggtgaa
      721 cacaagatta gctccacttt tagtgacacc cctttgcttc tgaacaaagt cattgacata
      781 tctgctcctt ctggtacact ctgtccttac actgtggata ctgctccaag cactaacact
      841 gataccagtc ctctggacac ttactctctg aatactgtct taaaggcttg cactactgac
      901 agcactccaa gaaacatggc tgacaatatt ccagacacta acactactga cagaaacact
      961 agttctggtc attccccaag caattctacc tcaaacgcat tttgctctga caacagtaat
     1021 gatattacaa gcccttccat aaatacttat gatctagtca cctctgatga aactcatgaa
     1081 ccaccagatg ctaagagtat tccgagctat acttctgaga gtacttgcaa tgctctcatc
     1141 actgaaaatg ctcagacctg ctcctcgaat aaagatgatc tcagaccatc tggtgctgcc
     1201 accatttcca acaacaccag agcatatact gaagacaatc ctggagagac agagactaac
     1261 atgggagctg gagacagtaa gcagatatca gatgaaaacc aaaggaagag gcactcatca
     1321 aatgcatcag tgagagaaca caatacagaa tatggaacac agccatgttg ctccaacatt
     1381 gaaaaacctg tggtttcaaa tatccaaaca cgatctgcaa ctgtttcatg ggctctgaac
     1441 agtgctgaaa aatatgatat taattctccg atgaaatttg aattgacact gtccagcagt
     1501 ggtaaaaatg gcaactataa aaatatttat actggtgatg gcgttactgt ggtcctacat
     1561 gatctacagc cttgcacggt ctacttctta agagttgcaa tcataagaga tggagaacac
     1621 agaaatgtgt ctgaagtggt tagcttcaca acaccaggct gtgaaccaga ccctcctctt
     1681 gcacccacac tgattagcag aaccaagaac agcctgaact tacaatggaa aggttgcaat
     1741 gataatggat ccaaaataag cagctttcta ttggaatggg atgagggcat aggtgaagac
     1801 ttcaaaagct gttacactgg gcccctgaaa cagcacaagc tctttaaact gagcccatcg
     1861 acaaagtatt ccttcagatt ggctgccaaa aatcacttcg gctgcagtaa tttcagtgaa
     1921 acagcagtct tctatacgtc gggaaacacg ccttcagcac ctctgccacc taagttgaaa
     1981 gaggcaggag tctacagttt gtctctagaa tggtgtgccc caacaaaccc aaaccctaat
     2041 gataccctta cttatgtgct agagatggag gaagcaaagt ctggattagg ttttaaacct
     2101 aaatacaatg gagaggacct ctcttgcact gtgaaaaatc ttcagagaaa tactacatac
     2161 aagtttcgga tttttgccta caatctggaa ggaaggagca accccagtgg agaagtaaaa
     2221 tatactaccc gtccagctag gcctggatgc cctaataaac cacacgtagt gggaacgatc
     2281 catgcccgcc aagtgacaat tggatgggac ttacccaaag ataatggtgg aatgaacatt
     2341 tcaagttaca gtttagaagt ttgtgaaaat tccgatgctg ggaatctctg gaaaataatc
     2401 tacagtggca cactgcagga attcctgtac gatgacctcc aaccaggcac cacttataaa
     2461 cttagggtct tttgcacttc acctgcaggc caaagccgtc cttcagatgt attgacaatt
     2521 cagacacctg ctcttcctcc tgagtcttgc agttcgcagc ccttacatag taaaagcaag
     2581 ggaagggatg ccaaccttct tgacaatcgt tctgttaatg ggaagtctga agcacctgtg
     2641 cgaggcaaaa aagcaaaagg tcctcatgac aaaaaggagt gtcccagctc tgaaaagaca
     2701 tgtgcacttg gatctcagtc aatggagtgt ggatctgtcc cagcccggca ccctccttct
     2761 cagtgtggta cacctgtgct aacctgcaag ggtccaacct gtgttattgt cagttgggaa
     2821 atccctaagt gcaatggtgc tgaaatcatt gattaccgac tacaatgggg acaagttgaa
     2881 gagtctatgc atttgattta tactggccct tgcttgcgct acgaagttaa aggtcttatt
     2941 cctgcaacta catacttttg cagagtacag gctgtaaata tagttggggt tggaatgttt
     3001 ggaggaactg caaaagtgac aacacctgga acggtaccag caatggttcc aatgttacaa
     3061 gaagttgaaa acaaagtgcc tgccaagcag tcatcaactt gcatagctat ccggtgggag
     3121 gagccggact gccatggctc tcagatcact ggatataaca ttgaatatgg agataaaaaa
     3181 atcgtgactg tcaaaagggt aaccgagtat gttctgaaaa atctacaacc taatactaca
     3241 taccgaatca gaattcaagc tatcaatcat tatggactaa gcccttttag cccatcaata
     3301 agatgcaaaa ccaaaccact gccaccagag cctccgcagc ttaattgtgt ggtctacgga
     3361 caccagagtc tcagactcaa atggggcaca gtctccagca aaaagtcact tgcaaacttt
     3421 atcagctaca acttactaat ggaagaccga tctggcaggt tttctgtcat ttaccgtggg
     3481 acagatgtga ctcacaaagt gcaaaaactg actgaatata cacaatacaa gtttaaaatc
     3541 caggcgtgta atgaagctgg ggaaggacca gagtctgaca tctacacttt cactacaacc
     3601 aagtccccac caactgcact taaagcaccc aaagttcatc cactgaataa caattgttgt
     3661 gagatcaaat gggagacttt ggaaccaatt aaaggtgacc ccattgtgta ctgtgttcaa
     3721 gtcaccaccg gaaaaaaggc tcatcagatt tacaaaggac cgaacacttc cttttccttt
     3781 tcgaactatc atgcaaattc acgctaccgc ttcaaggtct gtgcaggacg ccaatatgaa
     3841 acctccaatg gtctccaaga gctgtggggg ccatatagcc ccagtgctct gttctcgacc
     3901 tataagcatc actcagggca tggcaaaggc agtgggggta aaggaaaagg caaccacagt
     3961 gagaaagggg aaaagtgcaa gacagagatg agtgatgata ccttcgttct tacccttttg
     4021 ataggtttcg cacttattgc tgttttgtgt gctgttgctg ttcagtattt ccttatcaat
     4081 tagtgtattc ttttaggaaa aaaagaaagc agattatata caatttagaa agccttagat
     4141 acatcataat gcttatgctt ataattaatg cttattgata gaaagtagaa acagggggaa
     4201 aaaagcaaaa cccctatctt cactttacat gctcttatac agaagaaaag agatttctaa
     4261 ggaaaaacct accatgaatt ttcattgttc tgtcaacaac cattgctttg ttatatcaaa
     4321 ttcagtcatt tgtggaaact ttctatcttc tctcttcaag ttaatgtttt caaaaacttt
     4381 taggactatg aaataagaac agtattttgg aatttcttta gaataaaatg agaaaaatca
     4441 cttctatctg tcctgttaat gtacacatga agtaataaaa atgtatctac caaa
//
