LOCUS       NM_001412039            6094 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus fibronectin type III domain containing 3a
            (Fndc3a), mRNA.
ACCESSION   NM_001412039 XM_006252302
VERSION     NM_001412039.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6094)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 6094)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 6094)
  AUTHORS   Carrouel,F., Couble,M.L., Vanbelle,C., Staquet,M.J., Magloire,H.
            and Bleicher,F.
  TITLE     HUGO (FNDC3A): a new gene overexpressed in human odontoblasts
  JOURNAL   J Dent Res 87 (2), 131-136 (2008)
   PUBMED   18218838
REFERENCE   4  (bases 1 to 6094)
  AUTHORS   Obholz,K.L., Akopyan,A., Waymire,K.G. and MacGregor,G.R.
  TITLE     FNDC3A is required for adhesion between spermatids and Sertoli
            cells
  JOURNAL   Dev Biol 298 (2), 498-513 (2006)
   PUBMED   16904100
REFERENCE   5  (bases 1 to 6094)
  AUTHORS   Russell,L.D., Hikim,A.P., Overbeek,P.A. and MacGregor,G.R.
  TITLE     Testis structure in the sys (symplastic spermatids) mouse
  JOURNAL   Am J Anat 192 (2), 169-182 (1991)
   PUBMED   1759682
REFERENCE   6  (bases 1 to 6094)
  AUTHORS   MacGregor,G.R., Russell,L.D., Van Beek,M.E., Hanten,G.R.,
            Kovac,M.J., Kozak,C.A., Meistrich,M.L. and Overbeek,P.A.
  TITLE     Symplastic spermatids (sys): a recessive insertional mutation in
            mice causing a defect in spermatogenesis
  JOURNAL   Proc Natl Acad Sci U S A 87 (13), 5016-5020 (1990)
   PUBMED   2164218
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Sep 14, 2022 this sequence version replaced XM_006252302.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.42601.1,
                                           SRR26643284.18047.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-279               JAXUCZ010000015.1  54276129-54276407   c
            280-417             JAXUCZ010000015.1  54242080-54242217   c
            418-493             JAXUCZ010000015.1  54210969-54211044   c
            494-570             JAXUCZ010000015.1  54165134-54165210   c
            571-808             JAXUCZ010000015.1  54156151-54156388   c
            809-1078            JAXUCZ010000015.1  54152974-54153243   c
            1079-1137           JAXUCZ010000015.1  54151353-54151411   c
            1138-1295           JAXUCZ010000015.1  54135694-54135851   c
            1296-1355           JAXUCZ010000015.1  54135531-54135590   c
            1356-1494           JAXUCZ010000015.1  54134459-54134597   c
            1495-1548           JAXUCZ010000015.1  54132495-54132548   c
            1549-1673           JAXUCZ010000015.1  54130039-54130163   c
            1674-1848           JAXUCZ010000015.1  54128770-54128944   c
            1849-1935           JAXUCZ010000015.1  54127557-54127643   c
            1936-2074           JAXUCZ010000015.1  54126075-54126213   c
            2075-2143           JAXUCZ010000015.1  54124991-54125059   c
            2144-2262           JAXUCZ010000015.1  54123946-54124064   c
            2263-2368           JAXUCZ010000015.1  54121634-54121739   c
            2369-2544           JAXUCZ010000015.1  54121373-54121548   c
            2545-2658           JAXUCZ010000015.1  54120084-54120197   c
            2659-2808           JAXUCZ010000015.1  54119311-54119460   c
            2809-3092           JAXUCZ010000015.1  54118927-54119210   c
            3093-3305           JAXUCZ010000015.1  54118622-54118834   c
            3306-3472           JAXUCZ010000015.1  54110092-54110258   c
            3473-3600           JAXUCZ010000015.1  54109179-54109306   c
            3601-6094           JAXUCZ010000015.1  54099510-54102003   c
FEATURES             Location/Qualifiers
     source          1..6094
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p11"
     gene            1..6094
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /note="fibronectin type III domain containing 3a"
                     /db_xref="GeneID:306022"
                     /db_xref="RGD:1304736"
     exon            1..279
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            280..417
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             316..3915
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /codon_start=1
                     /product="fibronectin type-III domain-containing protein
                     3A"
                     /protein_id="NP_001398968.1"
                     /db_xref="GeneID:306022"
                     /db_xref="RGD:1304736"
                     /translation="MMAEHPPLLDTAQILSSDISLLSAPIVSADGTQQVILVQVNPGE
                     AFTIRREDGQFQCITGPAQVPMMSPNGSVPPIYVPPGYAPQVIEDNGVRRVVVVPQSP
                     EFHPGGHTVIHRSPHPPLPGFIPVPTMMPPPPRHMYSPVTGAGDMATQYMPQYQSSQV
                     YADVDAHSTHGRSNFRDERSTKTYERLQKKLKDRQGTQKDKMSSPPPSPQKCPSPISE
                     HNGLIKGQNTSGVNTGSARNRSGRGRGCTQVDQEIEEKDEETKAFEAFLSNIVRPVAS
                     DIQARTVLLTWSPPSSFVNGEVTETTVPEFFNYEILVSSTGKEGKYRSVYVGEETSVT
                     LNDLKPATDYHAKVQAESNSIKGIPSEAESFTTLSCEPDTPNAPRIANRTKNSLTLQW
                     KAPSDNGSKIQSFILEWDEGKGSGEFCQCYMGSQKQFKITKLSPAMGCKFRLSAKNDY
                     GVSDFSEEVLYYTSGCAPSVPASPVLTKAGVTWLSLQWTKPSGTPSDEGISYILEMEE
                     ETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSSPSEVVEFSTCPDKPG
                     VPAKPSVKGKVHSHGFKITWDPPRDNGGAPINKYVVEMAEGSNGSKWDMIYSGATREH
                     LCDRLTPGCYYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQL
                     RWGPPQVDGGSPISCYAVEMTPADKDEPRDVYQGSEVECTVSSLLPGKTYSFRLRAAN
                     RIGFGPFSEKYDITTAPGPPDQCRPPQVTCRSATCAQVNWEIPLSNGTDITEYRLEWG
                     GVEGSMQICYCGPGLSCELKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPAI
                     VTCLQEIRDDDIEYPHYSPSTCLAISWEEPYDHGSEILAYSIDLGDKQPLTVGKVTSY
                     VINSLQPDTTYRIRIQALNSLGAGPFSHTIKLKTKPLPPDPPRLECVAFNHQNLKLKW
                     GEGTPKTLATDAVQYHLQMEDKNGRFVSLYRGPCHTYKVQRLSESTSYKFCIQACNEA
                     GEGPLSQEYVFTTPKSVPAALKAPKIEKINDHICEITWEYLQPMKGDPVIYNLQVMVG
                     KDSEFKQIYRGPDTSFRYSSLQLNCEYRFRVCAIRQCQDPAGHQDLVGPYSTTVFFIS
                     QRTEPLASSNRDTVDSARTRRTLSDEQCAAVILVLFAFFSILIAFIIQYFVIK"
     exon            418..493
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            494..570
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            571..808
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            809..1078
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1079..1137
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1138..1295
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1296..1355
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1356..1494
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1495..1548
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1673
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1848
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..1935
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2074
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2075..2143
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2144..2262
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2263..2368
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2369..2544
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2545..2658
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2659..2808
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2809..3092
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            3093..3305
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            3306..3472
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            3473..3600
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
     exon            3601..6094
                     /gene="Fndc3a"
                     /gene_synonym="Fndc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcctcctc ccggctccgt agtaatcatg gcggcggcgg cattcgcggt ccctcgggtg
       61 aaacagaaag cgggagctac gcggagaggg agtgaagagc ggggctgagg cggcagcgcc
      121 gtcactgccg ggaaacatct ctcccccaca ccagtcagcg ccgcggcggc cgcgggagcc
      181 tgggcccacc tccaacctag tgaggggacg agccggagcc tcgcagaaga gacgccgggg
      241 gatccgcctt ccttcgcctc ggggcggcgg gattcagaga gttggagggc tttccggtgt
      301 attgatgcct tattgatgat ggcagaacac ccgcctttgc tagacacagc tcagatttta
      361 agtagcgaca tctctcttct gtctgcccct attgtaagtg cagatggaac acagcaggtt
      421 attctggtac aagttaatcc aggggaagca tttacaataa gaagagaaga tggacagttt
      481 cagtgcatta caggtcctgc tcaggttcca atgatgtccc caaatggttc cgtgcctcct
      541 atttatgtgc ctcctggata tgccccacag gttattgaag acaatggtgt tcggagagtc
      601 gttgtggttc cgcaatcacc agagtttcat cctggtggcc acacagttat ccaccgctcc
      661 ccacatcctc ctctgcctgg tttcattccc gtcccaacca tgatgccccc tccaccacgc
      721 catatgtact caccagtgac tggagctggc gacatggcaa cacagtatat gccacagtat
      781 cagtcttcac aagtatatgc agatgtagat gcccactcta cacatggcag gtccaacttt
      841 agagatgaaa gatctactaa aacatatgaa cgtttgcaga aaaagttaaa ggatcgccaa
      901 ggaacccaga aagataaaat gagcagccca ccaccatcac ctcagaaatg cccttctccc
      961 ataagtgaac acaatggact cataaaaggg cagaacacca gtggtgtgaa cacaggatct
     1021 gcaagaaaca gatcggggcg tgggagaggc tgtacacagg ttgaccaaga aatagaagaa
     1081 aaagatgaag aaactaaagc gtttgaagcg tttctttcca acatcgtcag accagtggcc
     1141 tcagacattc aggcaaggac agtcctgctc acctggtcac ctccttccag cttcgttaac
     1201 ggcgaagtga ctgagacaac tgtaccagag ttcttcaatt atgaaatcct ggtgtcgagc
     1261 actgggaagg aagggaaata cagaagtgtt tatgtaggag aagaaacaag tgtcacttta
     1321 aatgatctca aaccagccac agattaccat gcaaaagtgc aggcagagtc caattcgatc
     1381 aagggaatcc catcagaagc tgaaagcttt acgaccttaa gctgtgagcc ggacaccccc
     1441 aatgcaccga ggatagctaa cagaaccaaa aattctctca cgttgcagtg gaaggcacct
     1501 agtgacaatg gttctaaaat ccaaagcttt attttagaat gggatgaagg gaaaggaagt
     1561 ggagaattct gtcagtgtta catgggctca cagaagcaat ttaaaattac caaactgtca
     1621 ccagcaatgg gttgtaaatt tagattatca gccaaaaatg actatggtgt aagtgatttt
     1681 agtgaagagg tcttatacta cacctcaggc tgtgccccct ctgtacctgc aagtcctgtg
     1741 ctgaccaagg ctggagttac ttggctgtcc ctacagtgga ctaagccctc aggaacaccg
     1801 tcagatgaag ggatttctta cattttagag atggaggagg aaacatcagg gtatggcttt
     1861 aagccgaaat atgatggaga agatcttgct tacacagtga aaaatttgag acgaagtaca
     1921 aagtataaat ttaaggtcat tgcttataac tcagaaggta aaagcagtcc tagtgaagta
     1981 gtggaattca gcacctgccc tgataaacca ggagtacctg cgaagccttc ggttaaaggg
     2041 aaggtacact cacacggctt taaaattact tgggatccac caagagacaa tggaggggca
     2101 cccatcaaca agtatgtggt ggagatggca gaaggctcta atggaagcaa gtgggatatg
     2161 atctacagtg gcgccaccag ggaacatctt tgtgaccggc tgactccagg ctgctactac
     2221 cgcctgcggg tttactgcat tagtgatgga gggcagagtg cggtctctga atctttactt
     2281 gtgcagactc cagctgtgcc tcctggccca tgcctccctc ccaggttgca gggtagaccc
     2341 aaagcaaaag aaatacagtt acgatgggga cctcctcagg ttgacggcgg atcacccatt
     2401 tcctgttatg cagtagaaat gactcctgca gataaagatg agcccagaga tgtttaccaa
     2461 ggctctgaag tggagtgtac agtgagcagc cttcttcctg gaaagacgta cagcttcaga
     2521 cttcgtgcag caaacagaat agggtttgga ccattttcag aaaaatacga tatcactaca
     2581 gcccctgggc cacccgacca gtgcagaccc cctcaagtga catgcagatc tgcaacttgt
     2641 gcacaagtga attgggagat tcctttgagt aacggaactg acatcactga gtaccggctg
     2701 gaatggggag gagttgaagg aagtatgcag atatgttact gtggacctgg cctcagttgt
     2761 gaattaaaag gactttcacc agctactacc tattactgca gagtccaagc tttgagtgtt
     2821 gtaggtgcgg gtcccttcag tgaagttgta gcctgtgtga cgccaccgtc ggttcctgcc
     2881 attgtgactt gtcttcagga aatacgtgat gatgatatag aataccccca ttactcaccc
     2941 tccacctgcc ttgcaattag ctgggaagag ccttacgacc atggctcaga aatccttgcc
     3001 tatagcatag accttggaga caagcagccc ttgacagtgg ggaaggtgac aagctatgtc
     3061 ataaacagtt tgcaaccaga tacaacatac agaatacgaa ttcaagcctt gaatagcctt
     3121 ggagctgggc ctttcagcca tactattaaa ttaaaaacta agccccttcc tcctgatcca
     3181 cctcggctgg aatgtgttgc ctttaaccac cagaacctta agcttaaatg gggagaagga
     3241 actccaaaga cgttagcaac agatgctgtt cagtaccacc ttcagatgga agataagaac
     3301 ggaaggtttg tctccctgta cagagggcct tgtcatacgt acaaagtaca aaggctcagt
     3361 gaatccacgt cctacaagtt ctgtattcaa gcttgcaatg aagctgggga aggtcctctg
     3421 tcccaagagt atgttttcac tactccaaaa tctgttccag ctgccttgaa agcccctaaa
     3481 atagagaaaa taaatgatca catttgtgaa attacatggg aatatttaca gccaatgaag
     3541 ggtgacccgg ttatttataa tcttcaagtt atggtgggaa aagattcaga attcaagcag
     3601 atttacaggg gccctgatac ttcattccgg tattccagcc ttcagctgaa ttgtgagtat
     3661 cgatttcgag tgtgtgccat tcgccaatgc caagaccctg caggacacca ggacctcgta
     3721 ggtccctaca gcaccacagt gttcttcatc tcccagagga cagagccgct agccagcagc
     3781 aacagagaca ctgtggacag tgcacggacc cggcgcactc taagtgacga gcagtgtgct
     3841 gcagtcatcc tggtgttgtt tgctttcttt tccattctga ttgcctttat cattcagtac
     3901 tttgtaatca agtgaaaata taactttatt tttaacacta ttacatttta ttttgtcatg
     3961 tactaaaatt atttctgtat tgcttttaca aaatggtggc atttagcact ggcattgaga
     4021 ctatctattg aacatggctt tggcattttc agtgcttctg ttgttaggct ggctcttcat
     4081 gaaaattcag ccacagaaac atcattctgg ggagggctgt ttattttgtt cttaggttgg
     4141 gactcttttc ccagtttctt tctttttttt ctctccccca ccccccaccc cagatatgcc
     4201 ttctagtaaa acaaactttg taaaggacac cgctatgatt gttctgaccc atcagcagga
     4261 gtaaaacagt ggtaaccgca tctgtttgtc tcgaaggtga ttgccatgtg aaaatttcag
     4321 aatgactaga atttacacta acgttctcta cgaaacttgt tggagtctga tgctgtgaaa
     4381 gcaatctagt gctatatttc tacctcctca tttgtcttaa ttgtttggta agtgggattt
     4441 tgatgaataa ctggagggct tagcaaacaa aaactggatg aaggaatctg agtgagaaag
     4501 aagctttctg tttggtgagt gtggagttct tccttacaca cacacacaca cacacacaca
     4561 cacacactct cacactcaca agtgagcccg agaaagcaga ccagaagtac agatctttac
     4621 ttgaacagca tctcttcttc tttttgggat ttgagaacag aggacttttg aataataact
     4681 aaatttgaaa tctgtttggc ctctgttttc taggccttga aactatgtgt gtgtgtgtgt
     4741 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgcacaagc acatatgtgt acattgggtc
     4801 tatgtgcaga ctgtcaggta aggaggtgtg tccacactca tgacctgctc taggctagct
     4861 ttgaaggact cccaatggtt ttgcagcatc tcctataact actgctgttg ccatcagaat
     4921 ttctaatcaa actcaacctt tttgtttggg gtaccaaatc tgaagacaaa attaatttgc
     4981 accagtaaac ttcaagctgc tttctttctt gagaaactaa tgtttaatgt ataatgtctg
     5041 tttggatact gttccaaatt gttgattgca tgtgggtacc gttgcattag agcactttgc
     5101 aaattgcata gttcattaat gtttgtgagc ttgcatttgt gagttattga atgatcagat
     5161 tgaattttct catatcacat tgtacatctc gccttgatgt caatgactgc cagtaataat
     5221 acagtctgca atgaatttat atgaaatgtt tgttttatca catgttatct gtagacatct
     5281 gtatctagct tctttaattt attatttgga ctttagagta gtgagtcact aatttttagt
     5341 tgctgaggtc tgcattttag tgattactaa gcacttctgt ctgtcaaaaa gaaatgtatg
     5401 ttttgtactt tgaagatctc tgaagaattt ctcttataat agaatgggca tgtattgtaa
     5461 ttgttttatg tcaaatgatc tgtgctatag aaaaaaacat taacctttat tcaaaaaaga
     5521 aacggataaa cttggcctct ccaagtgtaa gaaaaccctg tcactctaat atactatatg
     5581 tttacatttt atttaatctc atatgaatag ggtgataact tgtcccccaa acaactgcgc
     5641 ttacgattgt tttctagaac ttcttaagtg ccacatttgg cagtacaaat gagttttgag
     5701 tgtcagagcc cagagatttc tatagagttg aatgtctaaa atggtaaaat gtgccacaca
     5761 gtggcttatg tttttcatag taattcaaat gaactcctat ttttgatagt aaatgtcatt
     5821 taatagtgta cttgccattt gagcctcact gcaatgttag tgcagaggag aaaacaattt
     5881 ttaatgtaat cttgatttta cctcatatac tgtacattcc aaaaactcaa ctttttaaag
     5941 attatagata cactaccaaa cataccacct taaaattgta taaggttgaa cttcatacaa
     6001 gtgaaaaaat ataatctcat aagaatacat aaactatgta gcaaaagtat ctgtaaaatc
     6061 catggaaaat aaaagttgta tcattctttt ttga
//
