LOCUS       NM_001419679            2153 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus fibronectin type III domain containing 10
            (Fndc10), mRNA.
ACCESSION   NM_001419679 XM_001058198
VERSION     NM_001419679.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2153)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2153)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Apr 13, 2023 this sequence version replaced XM_001058198.7.
            
            ##Evidence-Data-START##
            Transcript is intronless :: SRR26643295.24050.1,
                                        SRR26643299.25853.1 [ECO:0000345]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, conservation,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2153              JAXUCZ010000005.1  171582366-171584518
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2153
                     /gene="Fndc10"
                     /note="fibronectin type III domain containing 10"
                     /db_xref="GeneID:680656"
                     /db_xref="RGD:1589420"
     exon            1..2153
                     /gene="Fndc10"
                     /inference="alignment:Splign:2.1.0"
     CDS             183..860
                     /gene="Fndc10"
                     /note="Fibronectin type-III domain-containing
                     transmembrane protein C1orf233 homolog; fibronectin type
                     III domain-containing protein 10"
                     /codon_start=1
                     /product="fibronectin type III domain-containing protein
                     10 precursor"
                     /protein_id="NP_001406608.1"
                     /db_xref="GeneID:680656"
                     /db_xref="RGD:1589420"
                     /translation="MRAPPLLLLLAACAPPSGAAVDPTPPGWEPAPDAPWCPYKVLSE
                     GPEAGGGRLCFRSPVRGFRCQTPGCVTLASAGGSLRAHVLRNRSVLLQWRLAPAEARR
                     VRVFALNCSWRGTYTRFPCDRVLLGASCRDYLLPDVHDSVRYRLCLQPLPLPLRAELA
                     AAPPELAECVEFTAEPAAMQEIVVAMTAVGGSICVMLVVICLLVAYITENLMHPTFRR
                     PSLRRQP"
ORIGIN      
        1 gcctttgccg ctgggtccga gagcgcaccc ggcgtgggcg tgaggcgggt cggagcgggt
       61 ggcgcggagg gcgctgcgtg gggcgagcgc ggcagcggct gcggcggcgc ggcccgcgtg
      121 accctccgcc gcgccccgtg cgctcgcgag cccgcgcccc gccgcgccgg cccagccgca
      181 ggatgcgcgc tccgccgctg ctgctgctgc tggctgcctg cgcgccaccg tcaggcgccg
      241 ctgtggaccc gacgccgccg ggctgggagc cggcccccga cgcaccctgg tgcccctaca
      301 aggtgctgtc cgagggccca gaggcgggcg gtgggcgcct gtgctttcgc agccccgttc
      361 ggggattccg ctgccagacg ccgggctgcg taacgctggc ctcggcgggt ggctcgctgc
      421 gcgcccacgt cctgcgcaat cgcagcgtgc tgctgcagtg gcgcctggct cctgccgagg
      481 cgcgccgcgt gcgcgtcttc gcgctcaact gctcgtggcg tggcacctat acgcgcttcc
      541 cgtgcgatcg cgtgcttttg ggtgcctcct gccgcgacta cctgctgccc gatgtgcacg
      601 acagcgtgcg ctaccgcctg tgcctgcagc cgctgccgct gccgctgcgc gccgagctcg
      661 ccgccgcccc gccagagctg gccgagtgcg tggagttcac cgctgaaccg gcagctatgc
      721 aggagatcgt ggtggccatg acagcggtgg gcggctccat ctgtgtcatg ctggtggtca
      781 tctgcctgct ggtggcctac atcaccgaga acctcatgca cccgaccttc cggcgaccca
      841 gtctgcgcag gcagccctga agcgcaaggc gacccgccca cctgggttcc atctgccaag
      901 tgcactgaga ccctaaggct ctctctctct gcttttctct cattctctct ccctctttag
      961 gatccccatg gagggcctaa tggaaactag cccatgcagg gaccttggca tcatcctacg
     1021 accttgccag ccccagatgg gtatctgcct tccagactca ggcctcagac tggtccatag
     1081 gcctgggcta gagtgtcagt ggcagccagg ggtcttctcc atctccagag gcctttatag
     1141 ggccggccag aatatacagt cccttctggc aataaccact ggcacccagg atcacgaacg
     1201 tgaactttca tcctgtgtca ggttgtcaaa gcttggtcgt gattgttgct tggtcacttt
     1261 ttgtgctttg cagattggga ggagtgacct ctggagcctg tacccacccc accttatccc
     1321 agtgggctta ggttagcttt gtgccttagt atctctgacc cactgcagga gccacccatc
     1381 atccctcagc tgtccatggg gattggggcc ctgtggctgg ctggcttatg catgcatctg
     1441 gtcagagtcc cattgaggac acaccatctt tgagactttc aggagcctgg ggcaagggtt
     1501 ctcaggccct gttttgtctt cctttgtggg tgtccgagaa gccaagagcc atgatgtagc
     1561 tcagcaggct gggcccagtg tccagctgct gcatccaggg gtgagtgtcc tccaccttag
     1621 gaggctgggg attcaccctt tccttttgct tgtactgcct tgattatgat tttcccaggg
     1681 cggtggtgga ggttgggaag acagctgagg gatcctgagg gctgaaggaa agctgcccag
     1741 ccaaaccctt aactgtggtc tggatcccaa gcctcaacca acctaagaaa cctcagtggc
     1801 cacagtgcta ctttactagc ccagttctca cactaccgcc tgagatctga ccccagtgat
     1861 gttgcccctc tttctacatg ggcagaggct ggtcttgcct acctcctggt agacaggggc
     1921 accttgtgat attgggaaga gtaaggtatt gcccctgtgt ctctgagcct gggctctgac
     1981 cactggactt aaccctggca atttttcctc ctactctcaa ccccagcgac catgatgacc
     2041 tgagccctgg ctggcagcac ccgtgcccta cctctctgtc tttgctctgc ccgttcccta
     2101 tgaggcactg gtcagttgcc agcatctaaa tgtccatcac tctcagacca aaa
//
