LOCUS       NM_001013159            4085 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus formin binding protein 4 (Fnbp4), mRNA.
ACCESSION   NM_001013159 XM_001065862 XM_006234505 XM_230291
VERSION     NM_001013159.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4085)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Dec 1, 2020 this sequence version replaced
            XM_006234505.3, NM_001013159.2.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB545063.1, SRR26643288.14366.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-385               JAXUCZ010000003.1  97188852-97189236
            386-478             JAXUCZ010000003.1  97190131-97190223
            479-615             JAXUCZ010000003.1  97193961-97194097
            616-802             JAXUCZ010000003.1  97194316-97194502
            803-950             JAXUCZ010000003.1  97195008-97195155
            951-1071            JAXUCZ010000003.1  97195258-97195378
            1072-1419           JAXUCZ010000003.1  97197864-97198211
            1420-1630           JAXUCZ010000003.1  97199934-97200144
            1631-1755           JAXUCZ010000003.1  97202440-97202564
            1756-1860           JAXUCZ010000003.1  97204359-97204463
            1861-1994           JAXUCZ010000003.1  97205797-97205930
            1995-2179           JAXUCZ010000003.1  97206916-97207100
            2180-2496           JAXUCZ010000003.1  97214021-97214337
            2497-2641           JAXUCZ010000003.1  97214447-97214591
            2642-2973           JAXUCZ010000003.1  97215527-97215858
            2974-3131           JAXUCZ010000003.1  97217582-97217739
            3132-4085           JAXUCZ010000003.1  97217963-97218916
FEATURES             Location/Qualifiers
     source          1..4085
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..4085
                     /gene="Fnbp4"
                     /note="formin binding protein 4"
                     /db_xref="GeneID:311183"
                     /db_xref="RGD:1309238"
     exon            1..385
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     CDS             157..3222
                     /gene="Fnbp4"
                     /codon_start=1
                     /product="formin-binding protein 4"
                     /protein_id="NP_001013177.3"
                     /db_xref="GeneID:311183"
                     /db_xref="RGD:1309238"
                     /translation="MGKKSRAVPGRRPILQLSPPGPRSSTPGRDPDPDPDPETDSTAA
                     ATSQSVPAAATAAAATSPAVPATAAPEDSPSEDEQEVVVEVPNVVQNPPKPVMPTRPT
                     TVKATGGLCLLGAYADSDDDENDISEKTAQSKESNGNQSTDIDSTLANFLAEIDAITA
                     PQPVAPVVASAPPPTPPRPEPKEAATPALSSAASNGTDAAQTAGWHYDTQCSLAGVEI
                     EMGDWQEVWDENTGCYYYWNTQTNEVTWELPQYLATQVQGLQHYQTSSVTGTEAAFVV
                     NTDIYAKEKMIPASSNKSGPVIAKREVKKEVNEGIQALSNSEEERKGVAAALLAPLLP
                     EGVKEEEERWRRKVICKEADPVSEAKETSTAAEETGPSIKPPEVAMDSTEDPSQEDLC
                     SVVQSGESEEEEEEEQDTLELELALERKKAELRALEEGDGSVSGSSPRSDISQPASQD
                     GMPRIMSKRGKWKMFVRATSPESTSRSSSKTGRETPENGETAIGAEDSEKINENSDKE
                     AEVEESSEKIKVQIAPKVEEEQDLKFQIGELANTLTSKFEFLGINRQSISNFHMLLLQ
                     TETRIADWREGALNGNYLKRKLQDAAEQLKQYEINATPKGWSCHWDRDHRRYFYVNEQ
                     SGESQWEFPDGEEEEESQAQEVRDESLPKLTEKDKTCTDSNSAESSENSTGSLCKESF
                     SGQVSSSLMPLTPFWTLLQSNVPVLQPPLPLEMPPPPPPPPESPPPPPPPPPPPPPLE
                     DGEIQEVEMEDEGSEEPPAPGTEEDTPLKPSTQTTVVTSQSSVDSTASSPPSTKAVKR
                     KAPEISTAVVQRSATIGSSPVLYSQSAIAAGHQAVGMAHQAVSVSHAAAGMGHPTRGM
                     SLQSNYLGLAAAPAILSYAECSVPIGVTTPSLQPAQARGTVAAPAVVEPPPPPPPPPT
                     STPPPPPPAPKGPPPEKTRKGKREKAKKSKTKMPSLVKKWQSIQRELDEEDNSSSSEE
                     DRESTAQKRIEEWKQQQLVSGLAERNANFEALPEDWRARLKRRKMAPNT"
     exon            386..478
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            479..615
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            616..802
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            803..950
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            951..1071
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1419
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1630
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1631..1755
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1756..1860
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..1994
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            1995..2179
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2180..2496
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2497..2641
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2642..2973
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            2974..3131
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
     exon            3132..4085
                     /gene="Fnbp4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggctcag gccgcatgcg caagtgcacc gcgccggtta aaagcgggtc tcctcgggag
       61 gcggtgccgc ggttcatgaa tattgattac gcaccggggc gccgtgcgcc cgcccctcta
      121 atctgccgtc gttcgctgct cgcgcttggg ctcgtgatgg ggaaaaagtc ccgggcggta
      181 cccggccgca ggcctatcct ccagctctct ccaccgggtc ctcggagcag caccccgggc
      241 cgggatcccg accccgatcc ggatcccgag accgattcga cggctgcggc gactagccag
      301 tcagtgccgg cagctgcgac ggcagcggcc gcgacgtcgc ccgcggtgcc tgccaccgct
      361 gccccagagg actcgccttc agaagatgaa caggaagtgg tggtggaagt cccaaacgtt
      421 gtccagaatc ctcccaaacc agtcatgccc accagaccca caaccgttaa ggcaacagga
      481 ggtctgtgct tacttggtgc ttatgctgac agtgatgatg atgagaatga tatttctgaa
      541 aaaacagccc aatccaaaga gtccaatgga aaccagtcca ctgacattga tagcacactg
      601 gctaacttcc tagcggagat agatgccatc acagcacctc agcctgtggc tcctgtggta
      661 gcttctgctc cacctccaac tccacctcga ccagaaccca aagaagcagc aacacctgcc
      721 ctttcttccg ctgcatccaa cggaacagac gctgcccaga cagcagggtg gcattatgac
      781 actcagtgtt cattggcagg agttgaaatt gagatgggag attggcaaga agtctgggat
      841 gagaacacag gttgctatta ttattggaac acacagacaa atgaagtgac ctgggagttg
      901 ccccagtacc ttgccacaca ggtgcagggc ttacaacatt accagaccag ttctgtaaca
      961 ggtactgagg ctgcttttgt ggtaaataca gacatatatg caaaggagaa aatgattcca
     1021 gcttccagta ataaaagtgg accagtcatt gccaaacgag aagttaaaaa ggaagtgaat
     1081 gaaggaatcc aagctctttc caacagtgag gaggagagga aaggagtggc cgccgcattg
     1141 cttgctccct tactccccga aggggtaaaa gaagaggaag aaagatggag aagaaaagta
     1201 atttgtaaag aagcagatcc agtgtcagag gctaaggaaa caagcacagc tgctgaggaa
     1261 acagggccga gtataaagcc accagaagtt gcgatggaca gcacagaaga cccttctcag
     1321 gaggatctct gcagtgttgt tcagtctgga gaaagtgagg aggaggaaga ggaggaacaa
     1381 gacacccttg agctggagct ggctttggag aggaaaaaag cagagttacg agccttggaa
     1441 gaaggggatg gcagtgtgtc agggtctagt ccacgttctg acatcagcca gccagcatct
     1501 caggatggaa tgcctaggat catgtctaaa agaggaaaat ggaagatgtt tgttcgagcc
     1561 accagtccag aatctaccag ccgaagttct agtaaaactg gacgagaaac tccagaaaat
     1621 ggagaaactg caattggtgc tgaagattct gaaaaaataa atgaaaattc agacaaagaa
     1681 gcagaagtag aagagtcttc tgagaaaata aaagtccaga tagcacccaa agtggaggaa
     1741 gagcaggacc tcaaatttca gattggagaa ctggcaaata ccctgacaag taaatttgaa
     1801 ttcctaggga ttaacagaca gtccatctcc aacttccaca tgctgctctt acagaccgag
     1861 actcggattg cagactggcg ggaaggggct ctcaatggaa attatctaaa acgaaaactt
     1921 caggatgctg cagaacagct aaaacagtat gaaataaacg ccactcctaa aggctggtcc
     1981 tgccactggg acagggatca tagacggtat ttctatgtaa acgaacagtc gggcgagtct
     2041 cagtgggaat tcccagatgg tgaggaggag gaagaaagcc aagcacagga agttagagat
     2101 gagagtcttc ctaagctgac cgagaaagac aaaacctgca ctgattcaaa ctctgcagaa
     2161 tcctctgaga attccacagg ttctctttgt aaagaatcct tttctggtca agtttcttca
     2221 tcactcatgc cacttactcc attctggacc ctcctccagt caaatgtacc tgtgcttcaa
     2281 cctccattac ctctggaaat gccaccacct ccacctccac ccccagaatc tccccctcca
     2341 ccacctccac ctcctcctcc gcctccgccg ttggaagatg gtgagattca ggaggtagaa
     2401 atggaggatg agggaagtga ggagcctcct gcccctggaa cagaggagga cactcctttg
     2461 aaaccttcaa cacagaccac agttgtaacc agccagagtt cagttgattc tactgcctct
     2521 agtcctccat ccacgaaagc agtaaagaga aaggctccag aaattagtac tgcagtagtt
     2581 cagaggtcag ctactatcgg tagttctcca gttctctata gtcagtcagc tatagctgca
     2641 ggtcaccaag cagtggggat ggcacaccaa gcagtatcag ttagccatgc agcagcaggg
     2701 atgggtcatc cgaccagagg gatgagcctg cagtcaaatt accttggact agcagcagcg
     2761 cctgcaattc tgagctatgc cgaatgttct gtcccaatcg gagtgaccac tccatcgctg
     2821 cagccagctc aggcacgagg aactgtggca gcgcctgctg ttgtagagcc acctcctcct
     2881 ccacctcctc cacccacatc cactccgcct ccacccccac cagctcccaa agggccgccg
     2941 ccagagaaga cgagaaaagg gaagagagag aaggcaaaga aaagtaaaac caaaatgcca
     3001 tctttggtaa agaaatggca gagtatccag cgggagttag atgaagaaga taattcaagt
     3061 tccagcgaag aggaccggga atcgactgca cagaagcgaa ttgaggaatg gaaacagcag
     3121 cagctggtga gtggcctggc agaaagaaat gctaattttg aagcccttcc tgaggattgg
     3181 cgagcaaggc tgaagagaag gaaaatggct cccaacacct agttttaatt ttgttttatg
     3241 ttcagtctta aacagattta aactgttgtc caatgaactg taaacgatat aaggaaaaac
     3301 atacacattt cctgggcaag ggcatgggca tacaaagttg tccatttatg aaatgtagtt
     3361 tttctgatgc tgaagatgag gtgattggaa ttgctttgac ctggctgtct ttactctcac
     3421 actggcaact tagcatgtta gatatgagtc aaacatgtga gtcatgggca tgaaacctct
     3481 gtataggact tgctggcaaa agtgatgggc tttcctgccc agtagagact tgtttagttc
     3541 ctagtgtggc actctcccta ccttctactc cagaacaagt gcaattaaga aggcagctca
     3601 gtatcctacc ttgcttgacc atcaggatct ctttctgacc tcctcaagtc tgctgccctg
     3661 aagtgttgag atctgtgctg gtggccacat tgagcagttc tcagcaatcc tagaacactg
     3721 ctttgcagca ggtggtgtat ttacgcacag gcaggagcag cagccatcag gtgtttatat
     3781 ccttggtttt gagaactccc cctaagtgtg tggcaataag tataataagc cacgtctgta
     3841 ctgtcttcac tgtcttagcc acttcagaaa tacaccttcc ttctgtgtgt ggatgtattc
     3901 tccataagat tccagtgttt aaggagcagt tcactgttgt gtgctttcta ttgtatcaca
     3961 atcaggaaag atcactttaa actgaagaaa aaaaacaaat tgtgtcctaa agctgtttgt
     4021 atttctccag tttctgacat tgtaaatttg tatatatgca ccaataaagc tctttttata
     4081 cttct
//
