LOCUS       NM_001398792            3320 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus FLYWCH-type zinc finger 1 (Flywch1), mRNA.
ACCESSION   NM_001398792 XM_340760
VERSION     NM_001398792.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3320)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 23, 2021 this sequence version replaced XM_340760.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.122968.1,
                                           SRR26643295.37133.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000010.1  13298756-13298925   c
            171-528             JAXUCZ010000010.1  13290467-13290824   c
            529-945             JAXUCZ010000010.1  13289673-13290089   c
            946-1404            JAXUCZ010000010.1  13288194-13288652   c
            1405-1668           JAXUCZ010000010.1  13287713-13287976   c
            1669-1932           JAXUCZ010000010.1  13283620-13283883   c
            1933-2262           JAXUCZ010000010.1  13282621-13282950   c
            2263-3320           JAXUCZ010000010.1  13279232-13280289   c
FEATURES             Location/Qualifiers
     source          1..3320
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..3320
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /note="FLYWCH-type zinc finger 1"
                     /db_xref="GeneID:360488"
                     /db_xref="RGD:1309385"
     exon            1..170
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            171..528
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     CDS             276..2279
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /codon_start=1
                     /product="FLYWCH-type zinc finger-containing protein 1"
                     /protein_id="NP_001385721.1"
                     /db_xref="GeneID:360488"
                     /db_xref="RGD:1309385"
                     /translation="MPLPEPSEQEGESLRAGQEPSRGARKPQESSSLVPARDKEKPKP
                     TDVMSQETSSTTTLPNNTLQALPAKKQGRIIHRKRSRVDAVAPQPLEFLKTPSGSRLL
                     VHKSFLYKQEKAVGDKVYWKCRQHSELGCRGRAITRGFRVTEMRDHCHPPEKEGLGKK
                     RRQKEKLPSSGTEGQGDGVSLWLYPVEPEPTPQPSIETPEEEQGYRSLALQSLPPKKR
                     PTPGVVRYRPLEFLKTCYGGTFLVHQSFLYKREKTVGSKVYWTCREHAVHGCRSRAIT
                     QGQRVTVMRSHCHSPDMEGLQARRQQEKTIKKIQARRIGAGDLEDCDDIEDTLLQGVD
                     SLFYRRGPGTLTLSRSRSRKRAKKQQEPLQESPEEEDQDVDPKGPEFLKTPLGGNFLV
                     YESFLYRREKVAGEKVYWTCRDQARMGCRSRAITQGRQVTVMRGHCHPPDLLGLETLR
                     QRQKRPGPAQWDGPEGPEFLKTPLGGSFLVYESFLYRREKATGDKVYWTCRDQARMGC
                     RSRAITQGQRVMVMRRHCHPPDMGGLEALRQRENFPNLTHWEGPEPVQPLEFLQTSLG
                     GRFLVYESFLYRKEKAAGEKVYWMCRDQARLGCRSRAITQGRRVMVMRSHCHSPDLAG
                     LEALRQREREKAREREKAREREKAPSAAKKKKKKKKKKGKSKS"
     exon            529..945
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            946..1404
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            1405..1668
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            1669..1932
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            1933..2262
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
     exon            2263..3320
                     /gene="Flywch1"
                     /gene_synonym="RGD1309385"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcgcgcggg cacgggctcg ctccccaggg ggcagttggc ggcgggagcg ggcggcgggg
       61 tcgtggttct tagagcagca ccggctgcta ggccggcgcc tccattagcg gacatttaca
      121 cgaaggaccg ggtggctcag ccgccggaga ggcagggccc gctgccgtcg gaccgaggct
      181 ctgagtctca cattctggcc taggaggagg aagaggagag acccatttgc cagagggctg
      241 aaggtggcct tgagggccat gctctcggtc ccaggatgcc cctgcctgag cccagtgagc
      301 aggagggtga gagcctgaga gctggccagg agccatcccg tggagctcgg aaacctcaag
      361 agtcctctag tctggtcccg gccagggaca aggagaaacc caagccgaca gatgtcatgt
      421 cccaggagac gtccagcacc accaccctac ctaacaacac cctccaggcc ttgccggcca
      481 agaagcaggg acggataatt caccggaaac gtagtagggt agatgcagtt gccccccagc
      541 ccctggagtt cctgaagacc ccatctggga gccgccttct ggtgcacaag tcgttccttt
      601 acaagcagga gaaggccgtg ggggacaagg tgtactggaa atgccgccag cactcagagc
      661 tgggctgccg gggccgggcc atcactcgtg gctttcgagt cacagagatg cgggaccatt
      721 gtcacccacc tgaaaaggaa ggcctgggaa agaaaaggcg ccagaaggaa aagctgccca
      781 gctcgggcac tgaaggccaa ggagatgggg tgagcttgtg gctgtaccct gtggagccgg
      841 aacccacccc tcagccaagc atcgaaaccc cagaggagga gcaggggtac cgctccctgg
      901 cactgcagag cctgcctccc aagaaacgcc ccaccccagg agtggtacgg tatcggcctc
      961 ttgagttcct gaagacctgc tacgggggga ccttcctggt gcaccagtcc ttcctctaca
     1021 agcgggagaa gacagtagga agcaaggtgt actggacctg ccgggaacat gcggtccatg
     1081 gctgccgcag ccgtgccatc acccagggcc agcgcgtgac ggtgatgcgc agccactgcc
     1141 actcacctga catggaaggc ttgcaggccc ggcggcagca ggagaagacc ataaagaaga
     1201 tacaggcaag gcggattggg gctggggacc tggaggattg tgatgacatt gaagacacac
     1261 tgctgcaagg ggtggacagc ctgttctacc gcagagggcc aggcacactg actctcagta
     1321 gatccaggtc caggaaacga gcaaagaagc agcaggaacc cttgcaggaa tcccccgagg
     1381 aggaggacca ggatgtggac cccaaaggcc cagagttcct gaagacccct ctggggggca
     1441 acttcctggt gtacgagtcc ttcctctaca gacgggaaaa agtggccgga gagaaggtgt
     1501 actggacttg ccgggaccag gcacgcatgg gctgccgcag ccgggccatc acccagggca
     1561 ggcaggtgac tgtgatgcga ggccactgtc acccacctga cctgttagga ttggagactc
     1621 tgaggcagcg gcagaaacgc ccaggccctg ctcagtggga tggcccagaa gggcctgagt
     1681 tcctgaagac ccctctgggg ggcagcttcc tggtgtacga gtccttcctc tacaggcggg
     1741 agaaagcgac cggcgataag gtgtactgga cttgccggga ccaggcacgc atgggttgcc
     1801 gcagccgcgc catcacccag ggccagcggg tgatggtcat gcgcaggcac tgccacccac
     1861 cagacatggg tggcctggaa gccctgcggc agagggagaa cttccctaac ctgacccact
     1921 gggaaggccc agagcccgtg cagccgctgg agttcctgca gacatccctt ggaggccgct
     1981 tcctggtgta cgagtccttc ctgtacagga aggagaaggc cgccggcgag aaggtgtact
     2041 ggatgtgccg ggaccaggct cggctgggct gccgcagccg cgccattacc cagggccgtc
     2101 gggtcatggt gatgcgaagc cactgccatt cccctgacct ggctggcctg gaggccctga
     2161 ggcagcggga gagggagaag gcccgggaga gggagaaggc ccgggagagg gagaaggccc
     2221 ccagtgcagc caagaagaaa aagaagaaga agaagaagaa aggaaaatca aagagctaaa
     2281 accgatcagc cagtcctgct gcagtatctt ctctggaaca acagaggagc agcgggcacc
     2341 ccagatgctt cccatccaca caggcgttcc catccattca gatgcgcttg gtgacaactc
     2401 tttccactct tccaaacacc caggaccgtc acatttcctc agaggtctcc ccggaggagc
     2461 gcttggactt tgggtggtaa ccaagccgga tgggtggcct gcaggcctgc cccatgctgc
     2521 tctcaccgtg acctgagctg tggagaagtg tgtgtggact gatagacctc tgcccactct
     2581 gctgtccagg cctcagcacc atctgctttc agagcatgct gtctgagctt tccagtgggg
     2641 tgtgaccctg tgcgagtgag catgaacttc agcaaaatgg aagtcatccc aagtcaggat
     2701 atgtacgggg acttcctgcc actctctgaa gacagtgcaa gtcatagcag ggttttgttt
     2761 tgttatcttt tagggacagg tgtgaggcct tcctggtctt ttgtcacttg ctgcttacta
     2821 aggcacatcc agccctgacc gtggcagagc aggccaggct gaaggcttcg ctgtaccttc
     2881 ctggccgact ttgcatcctg tgttctttgc taccttaaac ctatgtccac agttcttggg
     2941 cgccagccca gaggtcagga ggaggtgaca ccaggtaggc atgctctggt ggcagcagca
     3001 ccaccgagag ttgcccacct agtgtcacat gatacacaag gtcagtaggt ggcatcaagc
     3061 ccacctcctg tagaagaggc tagcaggact aaggagccat gttagcagtg gcattctagt
     3121 gtccctggga atgcagaatc tcctgtgtgc tgcccctggc cagagctgtc ctcaccctgt
     3181 ctcagagctg catgctcctc tcccttagca agcaagccat ggagcagcca cccctgtggg
     3241 atagtaatgg cctggtgcct accactggct tctgctcatc tgcttccctc aataaaccct
     3301 atgtagtctc acggtacaga
//
