LOCUS       NM_001017493            2932 bp    mRNA    linear   ROD 03-MAY-2024
DEFINITION  Rattus norvegicus FIGNL1 interacting regulator of recombination and
            mitosis (Firrm), transcript variant 1, mRNA.
ACCESSION   NM_001017493 XM_573490
VERSION     NM_001017493.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2932)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083793.1.
            
            On Apr 29, 2005 this sequence version replaced XM_573490.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083793.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2932
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q23"
     gene            1..2932
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /note="FIGNL1 interacting regulator of recombination and
                     mitosis"
                     /db_xref="GeneID:498265"
                     /db_xref="RGD:1563470"
     exon            1..165
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     CDS             55..2772
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /note="isoform 1 is encoded by transcript variant 1;
                     uncharacterized protein C1orf112 homolog;
                     POLO1-associating protein; FIDGETIN-like-1 interacting
                     protein"
                     /codon_start=1
                     /product="FIGNL1-interacting regulator of recombination
                     and mitosis isoform 1"
                     /protein_id="NP_001017493.1"
                     /db_xref="GeneID:498265"
                     /db_xref="RGD:1563470"
                     /translation="MSQNGAVATNGVMLEELSSWPEEICRRELPSVLPRLLSMYQCSE
                     SWIEHIRILKIIVEMFLPHMNHLTLEETLFSQILPKTIQLFDGMICELTSEARELSSQ
                     NLEIQITIRNILQTMVQIIGSLTGCVHHVCATQESIILGNIHSLPSFILHIIKSTFVH
                     CKNSESVYSGRLHLVSDLLQTLFKEAYSLQKQLMELLDMVCLGPSEDENSILTMVEVI
                     HSLMDICSVISSMDKAFHANTWKFIIKQSLKHQSVIRSQLKHKEIISSLCEDILFSFH
                     SCLQLAEQTTEPAAQDNADYRLFQKTLKLCRFFANSLLHYTKEFLPFLPDSCRTLHQL
                     YLQIYSKFPPCLYTAKISKVQQEEIAGTFLVVLDPLLSQLLKSQSFVQTVLASKLDLP
                     HELQLPQVLLLVVVVDKLPSQPEDVQTLWCTEDMTRMSILKAIFYNFGQFSGELSLPA
                     HLQGVKGKGQAEVPVTLYQRICVHLCTFVASLHPTLFPELDAALLNAVLSTNMSTSLL
                     AMDVWCFLARYGTAELGAHHVTLVAHLIKSCPGRCVQLTNLSVLLRRLFFFMAPAHQV
                     EFIQKFSPREADNLHLWQYISFQALPADLRKQVTCEVTGVCTAQCRKWLSGSHTLAEL
                     DSLNTALSVLLTVCNSAGEALDSRQLTAVTEVVGQLWAFINVEQIISQPHVQQAFSLL
                     LQLLAFFIQTVDLQLISQVVNVLTLVIKLEPPDHVSLAVLDFLSSLGKLYISQTLRDK
                     VLPSLSCIVASLMVNRNWLLEQHTLEAFTQFAEGTKHEEIVSQCLGSEEIKNKVVSFL
                     EKTESVGETEAATADNSGEQKTDTFWEPVAKVTLEEAKGSAFQPCTKRARQELLLEEE
                     YRSAFQTATRALETTEALLKHSRAPAWLLSELGALQERIEKLKCCVLRG"
     exon            166..205
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            206..294
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            295..399
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            400..540
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            541..703
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            704..788
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            789..927
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1008
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1073
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1222
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1223..1337
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..1524
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1525..1607
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1608..1659
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1660..1749
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1750..1935
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2058
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2059..2154
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2155..2268
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2269..2373
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2374..2454
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2455..2577
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
     exon            2578..2908
                     /gene="Firrm"
                     /gene_synonym="FLIP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttctaagct gtggcgggag tcttgcgaat tcgttcgtct ccgggggcgt aagaatgtcg
       61 cagaacggtg cggtggcgac gaatggggtc atgctggagg aactcagcag ctggccggag
      121 gagatatgcc gtcgggagct gccttcggtg ctgccccggc tcctctctat gtatcagtgt
      181 tctgaaagtt ggattgaaca tatccgaatt ttgaaaatca ttgttgaaat gtttttgcct
      241 catatgaacc acctgacact agaagagact ttgttttccc aaattttacc aaagactata
      301 cagttgtttg atggcatgat atgtgaatta actagtgaag ccagagaact ctccagccaa
      361 aatttagaaa tccagatcac cataaggaac attttacaaa caatggtgca gatcatagga
      421 agtcttacag gatgtgttca tcatgtctgt gccacacagg aatctatcat tctaggaaat
      481 atccacagtc ttccctcatt catcctgcat attattaaaa gtacatttgt acactgtaag
      541 aatagcgaat ctgtgtattc tgggcgctta cacctggtgt cagaccttct ccagactctc
      601 ttcaaggagg cctattctct ccagaagcag ctgatggaac tgctggacat ggtttgcctg
      661 ggcccttcag aagatgagaa tagcattttg acaatggtag aagttattca ttcgttaatg
      721 gatatctgct ctgttatctc cagtatggac aaagcatttc atgccaatac ttggaagttt
      781 attattaaac agagcctcaa acaccagtca gttataagga gccagttgaa acacaaagag
      841 atcatttcta gcttgtgcga agacatcctt ttctcctttc attcttgttt acagttagct
      901 gagcagacaa cagagccagc tgcacaggat aatgctgact acagattatt tcagaaaaca
      961 ctgaaattgt gtcgtttctt tgctaactcc cttttgcact acactaagga atttcttcct
     1021 ttcctgcctg attcctgccg taccttgcac cagctttatc ttcagatata cagcaagttt
     1081 cctccatgtc tgtatactgc caagatttcc aaagtacagc aggaggaaat agcaggcact
     1141 ttccttgtgg tactggaccc tctcctcagt cagctgctca aatcccagtc ttttgtacag
     1201 acagttctgg ctagtaaact cgatctgccc catgaactgc agctcccaca agtcctcctc
     1261 ctggttgttg tcgtggataa gctgccctct cagcctgagg atgtacagac cctgtggtgc
     1321 acagaagata tgactaggat gtccatactc aaagccattt tctataattt tgggcagttt
     1381 tctggtgaac tctctctgcc tgctcattta caaggagtga agggtaaagg acaagccgag
     1441 gtacctgtca ctctgtatca gcgcatttgt gtgcatttgt gtacatttgt ggcttctctt
     1501 catcccacat tgtttcctga gctggatgct gctctattga atgctgtgct tagtactaat
     1561 atgagtacct ctttgttagc gatggatgtg tggtgcttcc ttgctcgata tgggactgct
     1621 gagcttggtg cacaccatgt tacattagtg gctcatctga taaagtcttg ccctggcaga
     1681 tgtgttcagc tcaccaacct gtctgtgctg ttgaggcgtc tctttttctt catggcccca
     1741 gcccatcagg tggaatttat ccagaaattt tctccaagag aagcagacaa cttgcatttg
     1801 tggcagtata tttccttcca ggcattacct gctgacctca ggaagcaagt cacatgtgaa
     1861 gtgaccggag tatgcacagc acagtgcagg aagtggttga gcggcagtca taccttggca
     1921 gaacttgact ctctgaacac agcactctcc gttttgctta ctgtatgcaa ttctgctgga
     1981 gaagctttgg atagtagaca actaactgcg gttactgaag ttgtgggtca gctttgggct
     2041 tttataaacg tggaacaaat aatcagtcaa ccccatgttc aacaggcatt tagcctttta
     2101 cttcagctgt tggcattttt catccaaact gtagatctgc agctgataag tcaggttgta
     2161 aatgtcctga ccttggtaat taaactagag cctcccgacc atgtctcttt ggcagtgctg
     2221 gattttttat cgtctctggg caaactttat atatctcaaa ctctccggga caaggtgctg
     2281 cccagcttgt cttgcattgt tgcttccctg atggtcaaca ggaattggtt actagagcaa
     2341 cacactttgg aggcatttac tcagtttgct gaggggacaa aacatgaaga gatagtttca
     2401 cagtgtctcg gttctgaaga aatcaagaac aaagttgtat cctttttgga gaagacagaa
     2461 tctgtaggtg aaactgaggc tgccacagcg gacaacagtg gggaacagaa gacagacact
     2521 ttctgggaac ccgttgctaa ggtgactttg gaagaggcaa aggggtcggc ctttcagcct
     2581 tgcacaaaga gagcccgcca ggagttgctc cttgaagaag aatacagatc agcatttcag
     2641 actgcaacaa gggctttgga gacaactgag gctttactca aacattctcg tgctccagcc
     2701 tggctgctgt cggaactggg ggcactgcaa gaaaggattg agaagctaaa atgctgtgtg
     2761 cttagaggtt gaatagactg tgtatcggac agaactgggt ttgactcttc aaatgcctta
     2821 cctggatgtt tttgtaaatg aaattgtgaa tataaattat gcttgtatat tttcatagca
     2881 cataaaagag cttttgtaaa tgtgaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
