LOCUS       NM_001008295            1925 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus factor interacting with PAPOLA and CPSF1
            (Fip1l1), mRNA.
ACCESSION   NM_001008295 XM_214044
VERSION     NM_001008295.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1925)
  AUTHORS   Gruber,A.R., Martin,G., Keller,W. and Zavolan,M.
  TITLE     Means to an end: mechanisms of alternative polyadenylation of
            messenger RNA precursors
  JOURNAL   Wiley Interdiscip Rev RNA 5 (2), 183-196 (2014)
   PUBMED   24243805
  REMARK    Review article
REFERENCE   2  (bases 1 to 1925)
  AUTHORS   Qu,S.Q., Ai,X.F., Li,C.W., Li,Q.H., Xu,Z.F., Qin,T.J., Zhang,Y. and
            Xiao,Z.J.
  TITLE     [Characteristics of cytogenetics and molecular biology in patients
            with eosinophilia]
  JOURNAL   Zhongguo Shi Yan Xue Ye Xue Za Zhi 20 (5), 1216-1220 (2012)
   PUBMED   23114151
REFERENCE   3  (bases 1 to 1925)
  AUTHORS   Arefi,M., Garcia,J.L., Briz,M.M., de Arriba,F., Rodriguez,J.N.,
            Martin-Nunez,G., Martinez,J., Lopez,J., Suarez,J.G., Moreno,M.J.,
            Merino,M.A., Gutierrez,N.C. and Hernandez-Rivas,J.M.
  TITLE     Response to imatinib mesylate in patients with hypereosinophilic
            syndrome
  JOURNAL   Int J Hematol 96 (3), 320-326 (2012)
   PUBMED   22806436
REFERENCE   4  (bases 1 to 1925)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   5  (bases 1 to 1925)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   6  (bases 1 to 1925)
  AUTHORS   Chan,S., Choi,E.A. and Shi,Y.
  TITLE     Pre-mRNA 3'-end processing complex assembly and function
  JOURNAL   Wiley Interdiscip Rev RNA 2 (3), 321-335 (2011)
   PUBMED   21957020
  REMARK    Review article
REFERENCE   7  (bases 1 to 1925)
  AUTHORS   Kiefer,H., Mizutani,A., Iemura,S., Natsume,T., Ando,H., Kuroda,Y.
            and Mikoshiba,K.
  TITLE     Inositol 1,4,5-triphosphate receptor-binding protein released with
            inositol 1,4,5-triphosphate (IRBIT) associates with components of
            the mRNA 3' processing machinery in a phosphorylation-dependent
            manner and inhibits polyadenylation
  JOURNAL   J Biol Chem 284 (16), 10694-10705 (2009)
   PUBMED   19224921
REFERENCE   8  (bases 1 to 1925)
  AUTHORS   Moser,K. and White,F.M.
  TITLE     Phosphoproteomic analysis of rat liver by high capacity IMAC and
            LC-MS/MS
  JOURNAL   J Proteome Res 5 (1), 98-104 (2006)
   PUBMED   16396499
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085767.1.
            
            On Dec 16, 2004 this sequence version replaced XM_214044.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085767.1, EU224276.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1925
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..1925
                     /gene="Fip1l1"
                     /note="factor interacting with PAPOLA and CPSF1"
                     /db_xref="GeneID:289582"
                     /db_xref="RGD:1309336"
     exon            1..209
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..1738
                     /gene="Fip1l1"
                     /note="FIP1-like 1 protein"
                     /codon_start=1
                     /product="pre-mRNA 3'-end-processing factor FIP1"
                     /protein_id="NP_001008296.1"
                     /db_xref="GeneID:289582"
                     /db_xref="RGD:1309336"
                     /translation="MSAGEVERLVELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDE
                     NEVERPEEENASANPPSGIEEEAAENGVAKPKVTETEDDSDSDSDDDEDDVHVTIGDI
                     KTGAPQYGSYGTAPVNLNIKAGGRVYGNTGTKVKGVDLDAPGSINGVPLLEVDLDSFE
                     DKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITVQQGRTG
                     NSEKEAALPSTKAEFTSPPSLFKTGLPPSRRLPGAIDVIGQTITISRVEGRRRANENS
                     NIQVLSDRSATEVDNNFSKPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGFP
                     PPPGAPPPSLIPTIESGHSSGYDSRSARAFPYGNVAFPHLTSSAPSWPSLVDTTKQWD
                     YYARREKDRDRDRERDRDRERERDRDRERERTRERERERDHSPTPSVFNSDEERYRYR
                     EYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHK
                     KSKRSKEGKEAGSEPVPEQESTEAAPAE"
     exon            210..254
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            255..294
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            295..352
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            353..456
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            457..521
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            522..629
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            630..760
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            761..870
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            871..964
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1121
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1176
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1177..1232
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1452
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1453..1590
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1591..1896
                     /gene="Fip1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtctcgcgct ctcttcgttc gcttaccagc gggttccctc cccttctcgc gccctgagac
       61 ggcgaggctg gggaaggggt tgaaaggggc tgttgatcgt cgcctttaac ttgttcgagg
      121 ggcggccatg tcggccggcg aggtggagcg tctggtggag ctgagcggcg ggaccggagg
      181 ggatgaggag gaagagtggc tgtatggcgg cccgtgggac gtgcatgtgc acagtgattt
      241 ggcaaaggat ctagatgaaa atgaagttga aaggccagaa gaagaaaatg ccagtgctaa
      301 tcctccttct ggaattgaag aggaagctgc tgaaaatggc gtggcgaaac cgaaagtgac
      361 cgagactgaa gacgacagtg atagtgacag tgacgatgat gaagatgacg ttcacgttac
      421 tattggagac atcaaaacgg gagctccaca gtatgggagt tatggaacag caccagtaaa
      481 tcttaatatc aaggcagggg gaagagttta tggaaataca ggaaccaaag tcaaaggagt
      541 agacctcgat gcccctggca gcattaatgg agttccactc ttggaagtag atttggattc
      601 ttttgaagat aaaccatggc ggaaacctgg tgctgatctt tccgattatt ttaattatgg
      661 ctttaatgaa gatacttgga aagcttactg tgaaaaacaa aagaggatcc gaatgggact
      721 ggaagttata cccgttactt caacgacaaa caagattacg gtacagcaag ggagaactgg
      781 aaattcagag aaagaagcag cacttccatc tacaaaagct gagtttactt ctccgccatc
      841 attgttcaag actggtctgc caccaagcag gagattacct ggagcaatcg atgtcattgg
      901 tcaaacaata accatcagcc gagtagaagg aagacggcgt gcaaatgaga acagcaatat
      961 acaggttctt tctgacagat ctgccactga agtagacaac aatttcagca aaccacctcc
     1021 atttttccct ccaggggctc ctcctactca ccttcctcct cctccatttc ttccacctcc
     1081 tccaactgtc agcactgctc cacctttgat tccaccacca ggtttccccc ctccaccagg
     1141 cgctccacct ccatctctta taccgacaat agaaagtggc cattcctctg gttacgacag
     1201 ccgttctgca cgggcgtttc catatggcaa tgttgccttt ccccacctta ccagttccgc
     1261 tccctcatgg cctagccttg tggataccac taagcagtgg gactattatg cacggagaga
     1321 aaaagatcga gatcgagacc gagagagaga ccgagacaga gaaagggaga gagaccggga
     1381 cagagaaagg gagcgcaccc gggagcgaga gcgggagcgg gaccacagcc ccaccccaag
     1441 tgttttcaac agtgatgaag agcgatacag atacagggag tatgcagaga gaggctatga
     1501 gcgccacaga gctagtcggg agaaagaaga gcggcacaga gaacgacggc acagagagaa
     1561 ggaggaaaca agacacaagt cctctcgcag taatagtaga cgtcgtcatg aaagtgaaga
     1621 aggggacagt cacagaagac acaagcacaa aaagtctaaa aggagcaaag aaggaaaaga
     1681 ggctggcagc gagccggtcc ctgagcagga gagcacggaa gctgcccctg ccgagtaggc
     1741 gccacctctt atgtacgtca gccccagaaa tagatgctat aaatctcctt atttttctgg
     1801 ataatgttta agaaatgtac ctttaatctt gttctgttag aatgaaacgt taactttttc
     1861 ttttccaaaa taaaagtgtg catttttttg tgttaaaaaa aaaaaaaaaa aaaaaaaaaa
     1921 aaaaa
//
