LOCUS       XM_575589                992 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus folliculogenesis specific bHLH
            transcription factor (Figla), mRNA.
ACCESSION   XM_575589
VERSION     XM_575589.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_575589.8.
            
            On Jan 21, 2021 this sequence version replaced XM_575589.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..992
                     /gene="Figla"
                     /note="folliculogenesis specific bHLH transcription
                     factor; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 93% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:500239"
                     /db_xref="RGD:1564754"
     CDS             249..836
                     /gene="Figla"
                     /codon_start=1
                     /product="factor in the germline alpha"
                     /protein_id="XP_575589.1"
                     /db_xref="GeneID:500239"
                     /db_xref="RGD:1564754"
                     /translation="MDTSSPASPEPFLATPQAEVLEELLQTQLGPLPRLAAICRLKRL
                     PSGGYSTTDDLHLVLERRRVANAKERERIKNLNRGFAKLKALVPFLPQSRKPSKVDIL
                     KGATEYIRILGCVLEGAKASEKQGPEEQQVHSSRPSDPHVSSTRELLGNATQPTGCAS
                     GLKKEEEGPWAYGGHSELYSYHQSAVPETRSYFIH"
ORIGIN      
        1 acctcatgcc ttcacatccc ctgccccctc cttgccttgt cttcacatgc cccgcccctc
       61 tcacctcatg ccctctacat gccccgcctc tctcacctca tgcccctgcc tcctctctcc
      121 tcgtgccctc acgtgccccg ccctctcctc tcacctcatg ccctccgagt gcccaccccc
      181 acggaggctt ggaacacctg aagcggagca ggtgcaaaac cctcggcccg tggccttgac
      241 gtgccattat ggacacgtcg tcgcctgcat ctccagagcc cttcctggcc accccgcaag
      301 ctgaggtgtt ggaggagctg cttcagacac agctggggcc cctgccccga cttgccgcca
      361 tctgtagact caagcggctg ccctcaggtg gctactccac cacagacgac ctgcatctgg
      421 tcctggagcg caggcgcgtg gccaacgcca aagagcgtga gcggataaaa aatctcaacc
      481 gcggctttgc aaagctgaag gctctggtgc catttctacc acagagcagg aagcccagta
      541 aagttgatat ccttaaaggt gccacggaat atatacggat acttggctgt gttctggaag
      601 gggcaaaggc ctcagagaaa caaggccctg aggagcagca ggtccacagt agcagaccct
      661 ctgaccctca cgtgtcctcg actagagagc tcttgggaaa tgctacccaa cctaccggct
      721 gtgcaagtgg cttgaagaaa gaagaggagg ggccttgggc gtatggtggc catagtgagc
      781 tgtacagcta tcatcagagc gcagtacctg agactaggag ttacttcatt cactaggagt
      841 ttgataaagg attccttcta aaacagtcat gtataagttg aaaagctcac agagcatcgc
      901 caagatgagt atttttcttc atgtaaaata tgattaaaat gagatggtac gggaaaggag
      961 tttacttact tggagatgac tgtgttccct ag
//
