LOCUS       XM_039098767            1736 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FIG4 phosphoinositide 5-phosphatase
            (Fig4), transcript variant X4, mRNA.
ACCESSION   XM_039098767
VERSION     XM_039098767.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098767.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1736
                     /gene="Fig4"
                     /gene_synonym="Kiaa0274; RGD1311375; Sac3"
                     /note="FIG4 phosphoinositide 5-phosphatase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     55 samples with support for all annotated introns"
                     /db_xref="GeneID:309855"
                     /db_xref="RGD:1311375"
     CDS             207..1715
                     /gene="Fig4"
                     /gene_synonym="Kiaa0274; RGD1311375; Sac3"
                     /codon_start=1
                     /product="polyphosphoinositide phosphatase isoform X2"
                     /protein_id="XP_038954695.1"
                     /db_xref="GeneID:309855"
                     /db_xref="RGD:1311375"
                     /translation="MPTAAAPIISSVQKLVLYETRARYFLVGSNHAETKFRVLKIDRT
                     EPKDLVVIDDRHVYTQQEVRELLGRLDLGNRTKLSQKGSSGLFRAVSAFGVVGFVRFL
                     EGYYIVLITKRRKMADIGGHAIYKIEDTSMIYIPNDSVRITHPDEARYLRIFQNVDLS
                     SNFYFSYSYDLSHSLQYNLTVLRMPLEMLKSETSKTCQESFDIFEDEGLTTQGGSGVF
                     GISSEPYMKYVWNGELLDIIKNSVHRDWLLYIIHGFCGQSKLLIYGRPVYVTLIARRS
                     SRFAGTRFLKRGANCEGDVANEVETEQILCDASVMSFTAGSYSSYVQVRGSVPLFWSQ
                     DISTMMPKPPITLDQADPFAHIAALHFDQMLQRFGSPIIILNLVKEREKRKHERILSE
                     ELVAAVTYLNQFLPPEHSIVYIPWDMAKYTKSKLCNVLDRLNVIAESVVKKTGFFVNR
                     PDSYCSVLRPDEKWNELGGRVIPTGRLQRGISLWSEVAQVSNGDLKASLCSS"
ORIGIN      
        1 ggggctcggg gaatccggaa gcaccgggct gctgctgtct cctgagggtt tagggttccg
       61 acgttgtcat cgtcaggtgg atctggtgtg ctgggtctgc gtgcggagtc tcctctgtct
      121 ccgggggggg gggggggggc cctgaaactg tcacgaccta ggccgcggct tggtgccctg
      181 tagtgaggcc tccattggct ggagccatgc ccacggccgc tgcccccatc atcagttcgg
      241 tccagaagct ggtgctctat gagactagag ctagatactt tctagtcggg agcaatcatg
      301 cggaaacaaa gttccgagtc ctgaagattg atagaacaga accaaaggat ttggtggtga
      361 ttgacgatag gcacgtgtac acgcaacagg aagtgcggga acttcttggc cgcctggatc
      421 tgggaaacag aacaaagctg agccagaaag gatcctccgg gttgtttcga gccgtctccg
      481 cgtttggtgt cgtaggtttt gtcaggttct tagaaggcta ctatatcgta ttaataacta
      541 agcggaggaa gatggcggat atcggaggcc atgcaatata taagattgaa gatacaagta
      601 tgatttatat ccccaatgac tctgttcgga ttactcaccc cgacgaagct aggtacctaa
      661 ggatattcca aaatgtggat ctgtccagca atttttactt tagttacagc tatgatctgt
      721 cccactccct tcagtacaat cttaccgtcc tgcgaatgcc cctggagatg ttaaagtcgg
      781 aaacatccaa gacctgccag gagagcttcg acatctttga agatgaaggg ttaactacgc
      841 agggcggcag tggcgtattt gggatctcta gtgagcctta catgaagtat gtctggaacg
      901 gcgaacttct ggatataatt aaaaacagcg tgcatcgcga ctggctactg tatatcattc
      961 atgggttctg cgggcagtca aagcttctga tctatggacg accagtgtat gtgaccctaa
     1021 tagccagaag atccagtagg tttgctggga cgcgctttct caagagaggt gcaaactgtg
     1081 agggagatgt tgccaacgag gtggagacgg agcagatcct ctgtgatgcc tcggtgatgt
     1141 cttttaccgc aggcagttac tcttcttacg tacaagtcag aggctctgtt cccttattct
     1201 ggtcccaaga catctcaacc atgatgccga aaccacccat tacactggac caggcagatc
     1261 ccttcgcaca catagccgct cttcactttg accagatgct gcagaggttt ggctccccca
     1321 tcatcatcct gaacttagtg aaggagagag agaagagaaa gcacgaaagg attctgagcg
     1381 aggagctggt ggccgcggtt acttacctta accagttcct gcccccggag cacagcattg
     1441 tatacattcc ctgggatatg gccaagtaca ccaagagtaa gctgtgtaac gttctcgatc
     1501 gtctgaacgt gattgcagaa agcgtggtaa agaagacagg cttcttcgtc aaccgccctg
     1561 attcttactg cagcgtttta cggccagatg agaagtggaa cgaactagga ggtcgtgtga
     1621 ttcccactgg tcggctccag agaggaattt ccctgtggtc ggaagtagct caagtgtcta
     1681 acggtgacct gaaggcctcc ctctgctctt cgtagaccgg catccttcga accaac
//
