LOCUS       NM_001107829            4666 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus fibrinogen C domain containing 1 (Fibcd1), mRNA.
ACCESSION   NM_001107829 XM_001079844 XM_008761689 XM_231138
VERSION     NM_001107829.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4666)
  AUTHORS   Verma,A., White,M., Vathipadiekal,V., Tripathi,S., Mbianda,J.,
            Ieong,M., Qi,L., Taubenberger,J.K., Takahashi,K., Jensenius,J.C.,
            Thiel,S. and Hartshorn,K.L.
  TITLE     Human H-ficolin inhibits replication of seasonal and pandemic
            influenza A viruses
  JOURNAL   J Immunol 189 (5), 2478-2487 (2012)
   PUBMED   22851708
REFERENCE   2  (bases 1 to 4666)
  AUTHORS   Schlosser,A., Thomsen,T., Moeller,J.B., Nielsen,O., Tornoe,I.,
            Mollenhauer,J., Moestrup,S.K. and Holmskov,U.
  TITLE     Characterization of FIBCD1 as an acetyl group-binding receptor that
            binds chitin
  JOURNAL   J Immunol 183 (6), 3800-3809 (2009)
   PUBMED   19710473
REFERENCE   3  (bases 1 to 4666)
  AUTHORS   Kuraya,M., Ming,Z., Liu,X., Matsushita,M. and Fujita,T.
  TITLE     Specific binding of L-ficolin and H-ficolin to apoptotic cells
            leads to complement activation
  JOURNAL   Immunobiology 209 (9), 689-697 (2005)
   PUBMED   15804047
REFERENCE   4  (bases 1 to 4666)
  AUTHORS   Matsushita,M., Kuraya,M., Hamasaki,N., Tsujimura,M., Shiraki,H. and
            Fujita,T.
  TITLE     Activation of the lectin complement pathway by H-ficolin (Hakata
            antigen)
  JOURNAL   J Immunol 168 (7), 3502-3506 (2002)
   PUBMED   11907111
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Apr 16, 2021 this sequence version replaced
            XM_008761689.2, NM_001107829.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1275388.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840109
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-231               JAXUCZ010000003.1  35523912-35524142   c
            232-705             JAXUCZ010000003.1  35516679-35517152   c
            706-865             JAXUCZ010000003.1  35512836-35512995   c
            866-1002            JAXUCZ010000003.1  35512357-35512493   c
            1003-1099           JAXUCZ010000003.1  35498707-35498803   c
            1100-1279           JAXUCZ010000003.1  35494295-35494474   c
            1280-4666           JAXUCZ010000003.1  35490459-35493845   c
FEATURES             Location/Qualifiers
     source          1..4666
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..4666
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /note="fibrinogen C domain containing 1"
                     /db_xref="GeneID:311861"
                     /db_xref="RGD:1309097"
     exon            1..231
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     CDS             160..1539
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /note="fibrinogen C domain-containing protein 1-like;
                     fibrinogen C domain containing 1-like 1"
                     /codon_start=1
                     /product="fibrinogen C domain-containing protein 1"
                     /protein_id="NP_001101299.1"
                     /db_xref="GeneID:311861"
                     /db_xref="RGD:1309097"
                     /translation="MVHERWKTVGGASQLEDRPRDKPQRAGCSYILCTVLLSLAVLLA
                     VAVTGAVLFLNHAHAPGTAPPPIVSTGAAGANSALVTVERADSSHLSLLIDPRCPDLT
                     DSFARLEGIQASILRTLSEHQAQPRLDGAPELLDALADQLPRLLARASELQAECAGLR
                     KGHSLLGQGLSTLQSEQGRLIQLLSESQGHMAHLVNSVSDVLEALQRERGLGRPRVKA
                     DLQRAPSRGARPRGCANGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTD
                     GGGWTVFQRREDGSVNFFRGWEAYREGFGKLTGEHWLGLKRIHALTTQAAYELHVDLE
                     DFDNGTAYAHYGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDS
                     DHSENNCAAFYRGAWWYRNCHTSNLNGQYLRGPHASYADGVEWSSWTGWQYSLKFSEM
                     KIRPLREDR"
     exon            232..705
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     exon            706..865
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     exon            866..1002
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     exon            1003..1099
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1279
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
     exon            1280..4666
                     /gene="Fibcd1"
                     /gene_synonym="Fibcd1l1; RGD1309097"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acacgcgctc acacgcagcc tagcttgcgg ccgccgctcc cgggccaccc cggatccccg
       61 gcaccgaggg gacctcctgc aagtgcaacg catcctgtgc acccctcgcc tcctttgcgc
      121 tcgccctcgc cccgcacccc ttgcgggtcc tgcaggaaga tggtccacga gcggtggaag
      181 accgtgggcg gcgcgtccca acttgaggac cgaccgcgcg acaaaccgca gagagcaggc
      241 tgcagttaca tcctgtgcac ggtgctcctg tcccttgcgg tgctgctggc ggtggctgtc
      301 accggcgccg ttctcttcct gaaccatgcc catgcaccag gcacagcgcc tccacccatc
      361 gtcagcactg gggctgccgg ggccaacagt gccctggtca ccgtggagag ggctgacagt
      421 tcccacctca gtctcctcat cgaccctcgc tgccctgacc tcactgacag cttcgcccgc
      481 ctggagggca tccaggcctc catacttcgg acactgagtg agcaccaggc acagccgcgg
      541 ctggatggtg cccccgagct gctggatgca ctggctgacc agctgccccg gctgctggcc
      601 cgggcctctg agctgcaggc tgaatgtgct gggctgcgca aaggacacag cctcctgggc
      661 cagggcctca gcaccctgca gagtgaacag ggtcgcctca ttcagcttct ctccgagagt
      721 caaggtcaca tggctcatct ggtgaactca gtcagtgatg tcctggaggc tctgcagagg
      781 gagcgggggc taggccggcc ccgagtcaag gctgaccttc agagggcacc ttccagggga
      841 gcccggcctc gaggctgtgc aaacggatct cggccccggg actgtctgga tgttctcctg
      901 agtggacagc aggatgatgg tgtctactcc gtcttcccca ctcactaccc agctggcttc
      961 caggtctact gcgacatgcg tactgacggc gggggctgga cggtgtttca gcgccgggag
     1021 gatggctctg tgaacttttt cagaggctgg gaggcttacc gggagggctt cggcaagctt
     1081 acaggggagc actggctggg gctcaagcgg atccacgccc tgaccacgca agcagcatat
     1141 gagcttcacg tggacctaga ggactttgac aatggcaccg cctatgccca ctacgggagc
     1201 tttggtgtgg gcttgttctc tgtggaccct gaggaggatg ggtacccact cacggtggct
     1261 gactactctg gcactgcagg cgactccctc ctgaagcaca gtggcatgag atttaccacc
     1321 aaagaccggg acagcgacca ttcagagaac aactgtgccg ccttctaccg aggggcctgg
     1381 tggtaccgca actgccacac atccaacctc aatggccagt acctgcgggg cccacacgcc
     1441 tcctacgccg acggtgtcga gtggtcctct tggacgggat ggcagtactc actcaagttc
     1501 tcggagatga agatccggcc actccgtgag gaccgctaga ctggcacgct gcccagcgct
     1561 agtgtcctct ggttatgtct agtccacaca catctcatcc catgcccacc ccatgcccac
     1621 tgcttcgaga atacgctctg ctcacctgtg catggctggc ctgctcttcg gtagggctgg
     1681 cccagggctg accctgaaac tcagctccct gagccagtga cgccccttcc caaccaggtc
     1741 cctgtgtatc aggtaacatg atcgtttgtt tctaacagtg gagctggcac ctggcaaccc
     1801 caaatcccac ctgcccgggc tttgtctgct gcatcctggt agggcagcat cccccacttt
     1861 tcctggcttt gcaaaaccat ccagagtagg gggcagagag cactccagcc ccctccctcc
     1921 agcagataaa agtggaagaa ggttcagacc tcctcgcctg cctgacacct gcctgcctgc
     1981 cctagcttca atcccccagg gcctggagac ccttcctctt atcagaggac cttgaacagc
     2041 tgccacagct ctcacttgtg gccaactgag ccggggcaca gctgcctaca aagccccaag
     2101 gccaagacca gtcccctggg ccacccttcc cctgggtttc tgaagagctg gggcgggggt
     2161 ttctattctc ctggttgctt tcaaagctca tttgctttcc cacctcaaac aaggtccacc
     2221 tgccctcctg cagggcaacc atgggtcctg cctgtggggc aagaggggtg gggtgggact
     2281 ggcctaagcc agtgagaacc tcttggggtg aggctgtgtc aggctcttgt gtggtgccaa
     2341 cctctgtgga ctgactctag gatcttctca gaagccagag ttagagtcag ccagccctgg
     2401 gactcagcat ggcccaagac tgcagagagg ctgccccctg ctggccatca tggacactgc
     2461 catcagggcc taacggggca ggggacaaag catcaagcag gttggacgtc tggacatttc
     2521 cttgtctaac cttctcaaca cctgcacagg ttatccccca ggaaggcagg ctgcagcccc
     2581 accctcagct accttcttgt cagctgagac gctcttatgg aaacctgaca ggggctttta
     2641 aaggactggg tggtaagatg gcaatggtga cctccagtca ggaggcagag acccacgcct
     2701 cttccttctg ccagacttgt gccaaagcct gaaccccgct gatgaactgt gtgacccgct
     2761 cagtccctca cgttgagcct cgggtcttca gcaagggtct gtcgcacatc ggttggagtc
     2821 aaagccatcc taggtgctag acaaggctgg ctattgctta tatgtcccaa gctgatggca
     2881 agaagcatgg gtagagtggc catggttctg atgggacaag ggatacacag ggaagtcccc
     2941 tcccattccc tctctgtcct cgacacccgg cacctagctt cattgcagag gtgggtagga
     3001 gcctaaacac atcccggcag acaccaccca cccccgaggc tgctgctgaa gtggcttctg
     3061 ttgccagctg ccgctttgag cgctgctcag aagtgccgag cgctttctga tgtggtatca
     3121 aacaaacccc ttcgagtgaa gcaacagatt cacacatgcg agtgtgggac aggagagctt
     3181 ccagccagga ctgagctgca aggactgcag gaactgaagc tcatcccacc agggcagctg
     3241 gtgggcaggt gaggggtgac aagcatccct gtctgctcac atcggaaatg acagcccttt
     3301 cagcccagcc actgccccag ggacaccaag ccctctccca ggacaggttg gtactctagg
     3361 gggtgtggtt ctgccaaaca ctggcagaat gggcacaagg tagggaaaag tagggagaga
     3421 ccaggtcaat agtccttcac cttcctcatg tgcaccctcc aagggcaggt gggagcactg
     3481 tccatgggag cactgtccct gggagcactg tcacagcaca ctgggccaca gcctccagcc
     3541 ctggcttgag ttcactggtc tgatgtctgt gtagatggct gccaaccata atcagagtag
     3601 ccacggaaat caggaatgtt tttggggtgg gggcaggaca ggtgcatgga gacatgataa
     3661 tgtcagcagg ccgtgggccc tgacccacca gacctacttt ggtttggcaa tggatgacta
     3721 accagggtga gtcagtgatg tcacctggca gtcacactgc ttgccttcct gggcagggtc
     3781 tccacacccc acactagggt cttagcagtg tggctgtctc tttgcaaagc atcaaaactt
     3841 ccttccaagc cctagctggc tctgtggatt ccaccaaagg cctcccagct ggctatacct
     3901 ggacagcaat cctgggatga tgagagacca gttagagcca tgagcctctc cggtggcatt
     3961 agtggcttgt gggagcggca ggacactagt gtttgttgtg ggagtggcgt cgccagttcc
     4021 cggttcttcc ctgcccccaa acccgtgtca ccccaagcct ccaggtggag gacaggcatc
     4081 tgtggccatg gtcactgcag gtcttggctc ccaacagcac ttctggaaga gagcaggccc
     4141 tcgaatgacc agaaagtctc cgagcaagag cgtgagcctc cagctttgaa taaaatgact
     4201 tgaccctgag gcaggagaca tggatgagcg aggggcaaga gctaggccca tggctgccct
     4261 gaaccctgtg atctgaggag gaacacgcca gcagaagtct catggaaccc aggagtgtgg
     4321 tgaagcaaca tggacccaag catctggagg cctctcagtg cctccgtctg ccttcggtga
     4381 aggttgcccg aggttctaag gctcagcaac tgcaggatcc ataaatccag aggccagggt
     4441 caggccgctg tggaattggg ggtgagggag gggtcagacc tgaggctttg aggagcaggg
     4501 caggcgtgca tgctggcaga tgcaatggaa ccctgggctg gggagcggct ctgagggtca
     4561 gtgcagcagc ccacaggcaa atagtgtggg tcggttgcta cttggggctt tgtgcactca
     4621 gtgtcttgta tttccctgtc ttcaataaag tctcgtggtg acccaa
//
