LOCUS       NM_001013172            1935 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus four and a half LIM domains 4 (Fhl4), mRNA.
ACCESSION   NM_001013172 XM_006241179 XM_234993
VERSION     NM_001013172.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1935)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1935)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On or before Nov 27, 2020 this sequence version replaced
            XM_006241179.3, NM_001013172.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099213.1, SRR26360181.236148.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-176               JAXUCZ010000007.1  20516308-20516483
            177-1935            JAXUCZ010000007.1  20519353-20521111
FEATURES             Location/Qualifiers
     source          1..1935
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..1935
                     /gene="Fhl4"
                     /note="four and a half LIM domains 4"
                     /db_xref="GeneID:314678"
                     /db_xref="RGD:1308978"
     exon            1..176
                     /gene="Fhl4"
                     /inference="alignment:Splign:2.1.0"
     exon            177..1935
                     /gene="Fhl4"
                     /inference="alignment:Splign:2.1.0"
     CDS             745..1587
                     /gene="Fhl4"
                     /codon_start=1
                     /product="four and a half LIM domains 4"
                     /protein_id="NP_001013190.2"
                     /db_xref="GeneID:314678"
                     /db_xref="RGD:1308978"
                     /translation="MSEFKCHHCRESLQGKKYVQKDNFNYCVTCFDAHCANICVECNK
                     PIGADSKEVCYKERFWHNTCFKCSKCLQPLATETFVVWDNKILCNNCVSQQAFPKCKG
                     CLKDIKQGEQSVEYKGTIWHKDCFVCSNCKEVIGTKTFFPKDEGFYCVACYDILFTKY
                     CVKCNKPITSGGVSYQDQPWHSECFVCVNCSKELSEQRFTVMDDKIFCVDCYKNFIAK
                     KCAGCKNPITGFGKGSNVVTHETNSWHDYCFNCKACSVNLANKHFVFHQEQIYCPDCA
                     KKLA"
ORIGIN      
        1 gagggaacta acggttatgg gaatttagaa cttctcccct gaggagggcg gcatggtcgc
       61 cagtgtctcc ctctccatcg cccaagggct tcaaccttta gctgctgccc taagggagtg
      121 acgggcaggg ccttcagtca gccgttctcc acggggcgcc ctgcgagctt aatagggtaa
      181 aatctatgaa gataacaaac atacaatcac tcctgattca acacgacagt aaggcaagaa
      241 ggttctaatt ccttaactct ccatcagagc atctaacaca atcctaaatc ctaatagccc
      301 tgccttacat cctattactg agatgccatg cgattcactg tgatgtgcgt tctccatttc
      361 tccaatgagt gatgatcaca gcctgttcag cttgcaggaa ttcttggtga tttttggcta
      421 aagtgtgtta gcaattcttt ctgtgttatc tgtaccatct gattctatgg catggaaagc
      481 atgctgttag gtagaagata gacatgagta gtggagctag gaagagtggt cctagaagac
      541 agcccacaac atcttcctgt ttgtacagcc taataatccc aaactacaag cttcatatcc
      601 atcacccagc agacagccta aactactatg tatgagcaag tatctccaga taacaactga
      661 tagctgttct caactatatc caactcatcc caaatacatc ctattctctg ctcatccagc
      721 gtgaggtccc ccatagaaga taccatgtct gagttcaaat gccaccattg ccgggaatcc
      781 ttgcaaggta aaaagtatgt gcagaaggat aacttcaact actgcgtgac atgctttgat
      841 gcacactgtg ccaatatctg tgtggaatgc aacaagccca taggtgcaga ctccaaggag
      901 gtgtgttata aggagcgatt ctggcacaac acctgcttca aatgttccaa gtgccttcaa
      961 cccttggcta ctgagacctt tgtggtctgg gacaacaaga tcctgtgcaa taattgtgtc
     1021 agtcaacagg ccttccccaa gtgcaaaggg tgcctcaagg atattaagca aggagagcag
     1081 agtgtggaat acaaaggtac catctggcat aaagactgct ttgtctgcag caactgcaag
     1141 gaagtcattg gaaccaaaac tttcttccct aaagatgagg gattctactg tgtggcttgc
     1201 tatgacatct tgtttaccaa gtattgtgtg aaatgcaaca agcccatcac atctggagga
     1261 gtcagttacc aggatcagcc ctggcatagt gagtgctttg tatgtgttaa ctgctctaag
     1321 gagctgagtg aacagcgttt cactgttatg gatgacaaga ttttttgcgt ggattgctac
     1381 aagaacttta tagccaagaa gtgtgctggg tgcaagaacc ccatcactgg gtttggtaaa
     1441 ggctccaatg tggtgaccca cgagacaaat tcctggcatg actactgctt caactgcaaa
     1501 gcctgttctg taaatctagc caataagcac tttgtgtttc atcaagagca gatatactgt
     1561 cctgactgtg ccaaaaagct agcttgacaa gggctcctat cctgtaaaat ggcatttgaa
     1621 ccatgctttt tgtctttcct gtttctgtgc tgcaccaacc acaggggatg agtgagcttt
     1681 cacctctgtg gtgctactcc tctgtctttt ctgacatgtt atagtattac tcagctaaga
     1741 acacacagtg attgcattag gattcaacaa ccttgcagca cagaatcatg tctctgttgt
     1801 tgcaatggaa aacaagttag attgagtcta ccatgtgaga tcagaaaagt gctaaccata
     1861 tagccacatg atgtgagaat cataggcaat aaaccttcca ctgagatgtt ccagaaaata
     1921 aacattttga actta
//
