LOCUS       NM_001170474            3805 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus FHF complex subunit HOOK interacting protein 2B
            (Fhip2b), mRNA.
ACCESSION   NM_001170474 XM_001070016 XM_224339
VERSION     NM_001170474.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3805)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001170474.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168691.1, SRR22582416.159445.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-74                JAXUCZ010000015.1  52083725-52083798   c
            75-153              JAXUCZ010000015.1  52077126-52077204   c
            154-326             JAXUCZ010000015.1  52074572-52074744   c
            327-431             JAXUCZ010000015.1  52073547-52073651   c
            432-554             JAXUCZ010000015.1  52073336-52073458   c
            555-800             JAXUCZ010000015.1  52071690-52071935   c
            801-997             JAXUCZ010000015.1  52071418-52071614   c
            998-1106            JAXUCZ010000015.1  52071070-52071178   c
            1107-1183           JAXUCZ010000015.1  52070771-52070847   c
            1184-1373           JAXUCZ010000015.1  52070305-52070494   c
            1374-1519           JAXUCZ010000015.1  52069580-52069725   c
            1520-1648           JAXUCZ010000015.1  52069348-52069476   c
            1649-1739           JAXUCZ010000015.1  52069135-52069225   c
            1740-1883           JAXUCZ010000015.1  52068870-52069013   c
            1884-2024           JAXUCZ010000015.1  52068438-52068578   c
            2025-2125           JAXUCZ010000015.1  52068162-52068262   c
            2126-3805           JAXUCZ010000015.1  52066341-52068020   c
FEATURES             Location/Qualifiers
     source          1..3805
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p11"
     gene            1..3805
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /note="FHF complex subunit HOOK interacting protein 2B"
                     /db_xref="GeneID:306015"
                     /db_xref="RGD:1308870"
     exon            1..74
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     CDS             30..2264
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /note="retinoic acid induced 16; family with sequence
                     similarity 160, member B2"
                     /codon_start=1
                     /product="FHF complex subunit HOOK-interacting protein 2B"
                     /protein_id="NP_001163945.1"
                     /db_xref="GeneID:306015"
                     /db_xref="RGD:1308870"
                     /translation="MLSRLGALLQEAVGAREPSIDLLQAFVEHWKGITHYYIESTDEN
                     TPAKKTDIPWRLKQMLDILVYEEKQQASSGEAGPCLEYLLQHKILETLCTLGKAEYPP
                     GMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGTAPGSLTEKEEVQFTSVLC
                     SKIQQDPELLAYILEGKKMIGKKKTARGSAAPPKDIAGYRDKDCPHSDAPSGDPGLDK
                     EYHGVPALSVHLPAVTEGPESGPGESNLITSLLGLCKSKKSRLALKAQENILLLVSLA
                     SPAAATYLTQSTSCCTAIAEHLCQLYRSMPACLDPADIATLEGISWRLPSAPSDETAF
                     PGKEALAAFLGWFDYCDHLITEAHTVVADALARAVAEKLFVETLQPQLLHVSEQSILT
                     STALLTVLLRQLRSPALLQEAMTFLLGTDQQPASKEDSSHTLGTHLIMHCDHLSDEIS
                     IATLRLFEELLQKPHERAIRSLVLQNLEGRLYVARGSPEPESYEDNLDLEEDPYFTDG
                     FLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHD
                     AYGLFQECSSRVAHWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRIARILDQPYSLNL
                     QVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFSG
                     KLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPHGPYLNFSPPP
                     EGQV"
     exon            75..153
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            154..326
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            327..431
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            432..554
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            555..800
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            801..997
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1106
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1183
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1373
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1519
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1520..1648
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..1739
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1740..1883
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..2024
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            2025..2125
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
     exon            2126..3805
                     /gene="Fhip2b"
                     /gene_synonym="Fam160b2; Rai16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggccgcga gccgggccgg gtcgccatca tgctgagccg gctcggggca ctgctgcagg
       61 aggccgtggg ggcgcgggag cccagcattg acctgctgca ggccttcgta gagcattgga
      121 aaggcatcac acactactat atcgagagca cagatgaaaa caccccagcc aagaaaacag
      181 atatcccctg gcgactgaag cagatgttgg acatcctggt gtatgaggag aagcagcagg
      241 catcctctgg tgaggctgga ccctgtctgg aatacttgct acaacacaag atcctggaga
      301 ccctgtgcac tctgggcaaa gcggagtatc ccccaggcat gcggcagcag gtattccagt
      361 tcttcagcaa ggtcctggcc caggtgcagc accccctgct acactacctg agtgtccaca
      421 gacccgtgca gaaacttctc cgacttggag gaacagcccc tggatccctc accgaaaagg
      481 aagaagttca gttcaccagt gtcctttgct ctaagataca gcaggatcca gagctgctgg
      541 cctacattct ggaaggtaaa aagatgatag gtaagaagaa gacagccaga gggtctgcag
      601 ctccacctaa agacatagcc ggctacaggg acaaggactg tccccacagc gatgctccca
      661 gtggggatcc tggactagat aaggaatacc atggtgtccc agccttgagc gtccacctgc
      721 ctgctgtgac tgaggggcca gaaagtgggc ccggggagag caatctcatc acctccctgc
      781 ttgggctgtg caagagcaag aagagtcgac tggccctgaa ggcacaggag aacatattgc
      841 tgctggtaag cctggcctca ccagcagctg ccacctacct gacacaaagt acctcctgtt
      901 gtacggcgat agctgagcac ctttgccaac tgtaccggtc catgccagcc tgccttgacc
      961 cagcagacat tgccacttta gagggcatca gttggaggtt accaagtgcc ccatctgatg
     1021 aaaccgcttt ccctggcaag gaggctctgg ctgccttcct gggctggttt gattactgcg
     1081 accaccttat cacagaggca cacacggtgg ttgcagatgc cttggcaagg gccgtggctg
     1141 agaagctgtt tgtagagacc ctgcagcccc agctcctgca cgtgtctgag cagagcatct
     1201 taacctccac tgccctgttg acagtcctgc tccgtcagct gcgctcccct gctctgctgc
     1261 aggaggccat gaccttcctc ttaggcactg accagcagcc tgcatccaag gaggacagtt
     1321 cccatactct gggcacacac ctcatcatgc actgtgacca tctctctgac gagatcagca
     1381 ttgccactct gaggctgttt gaggagctgc tgcagaaacc ccatgagcga gccatccgca
     1441 gtttggttct gcagaacctt gagggccgcc tgtatgtggc ccggggctcg ccagagccag
     1501 agagctatga ggataacctg gatctggagg aagaccccta cttcaccgat ggcttccttg
     1561 attctggcct tcaaccctcc acaaagcctc ccccagctcc tgccaccagt tcagatggca
     1621 aaacagcagt gacggagatt gttaacagct tcctttgcct ggtccctgag gaagccaaga
     1681 catcagcctt cctggaggag aatggatatg acacatatgt ccacgatgcc tacggcctgt
     1741 tccaggaatg cagctcccgt gtggcccact ggggttggcc cctgggtcca gcacccttgg
     1801 actctcatga gcctgaaagg cccttctttg agggccgctt cctccaagtg ctcttcgatc
     1861 gaattgcccg gattttggac cagccttaca gcctgaacct acaagtgacc tcagtcctgt
     1921 cccggctcgc cctgttcccc cacccccata tccatgagta cctcctggat ccctacatca
     1981 gcctggcccc tggctgcagg agcctgttct ctgtgcttgt cagggtgatc ggtgacttaa
     2041 tgcaaagaat tcagagggta ccccagtttt caggcaaact gctcctggtg cgcaagcaac
     2101 tgatgggcca gattcccgga gagcatctgg accatcagac cctactccag ggcgtggtag
     2161 ttcttgagga attctgcaag gagctggctg ccattgcgtt tgtcaagttt cccccacatg
     2221 gtccttacct gaacttctct ccacctccag aagggcaagt ctgagccagg agcatgatgg
     2281 gtgggggaag actcctgcct gtacttctgc ccacgggcag tctcctgcct ggccatgctg
     2341 tcactcagtc ctccatgtgg ggacttcggc cacagacctc acctgttgac atgagctgaa
     2401 gtttcaggga ggttctggct tctaaggcac tggtgttctt agagccttct gagagtagct
     2461 ggaggacggc cagtgagcgc ctagatgttg ccctgcatgt gtttcgtgac tatctctgct
     2521 atactgtgac cagggccaca acacaagata gctccagggg caagggaaat gaactgctgc
     2581 ttttgaggct ggctaaaact ccagtccgga gagataggtg gccaagaacc ctgtctgtta
     2641 cgttaggtat catggaagct gctgagactg ggcaggtttc tccatggctt catcaacagt
     2701 agtgaaggag acagagaagg gaactgaggg ggagccccct cttcctgctc taccctcctg
     2761 gagactgttg caaaatttcc aactgcctca tggcagatgc ccaaagtatt ctctgtgccc
     2821 aggcgggggc agctgctaac cagagctttg gcgcagctgc agccagggca ggcgagagcc
     2881 tgggagctgg gagctgggtg ccaggttcca gctccagctg gttcctctct ggcgccttct
     2941 gaacccgtct cggcaagtcg gaaacacctg ggcagagagg tcattgacca ggggtggtgg
     3001 gccttgccct cagaatcttg cccaaccccc agggatccta gtggaattcg atcctgggga
     3061 gcataggaac tcaaggtaca gatgggaacg ggcaccccaa ccccagactc ctgaagctag
     3121 taaggatagg ctgagacaca agcagataga tagctctggt attgttcttc ctatgtcctc
     3181 catggctggg gctgctaccc cacccggcct gaatctgtct cgacctgcaa gaacacttgg
     3241 gcggcgccag gcattacctc acaacaggcc tgcagttgtt ggcttcgctt ctgggcaagg
     3301 aggagcaggc cagagcccct tttgcttcct tttcctgccc atgctgcctc tcgaagctgg
     3361 gcacaggttg ccaggaggtg acatgaaaga ggaggaaact ccatgacctc tacctctccc
     3421 gcattcctcc cagcggggga ggacttctct gctgctccaa agaacatcac gcactcctgt
     3481 gtgtgtgaga gctatgaatt tgactctgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     3541 tgtgtgtgtg tgtgtgtgtg tgtgagagag agagagagag agagagagag agagagagag
     3601 agcgcgagag cgcgcgagcg tgctgggtgt gtgtgagctg cgagtgcaca tgggtgctga
     3661 tgtgggacag gagcagacct tggtggagtg ggtctagact cttgggattc ttacacattt
     3721 gaggggctgg gcaatactca atgcactttg gcatttgcat ggtgttttca caacagcaca
     3781 gcaataaaca ttgtgattgt gtgga
//
