LOCUS       NM_001400898            5398 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus FHF complex subunit HOOK interacting protein 2A
            (Fhip2a), mRNA.
ACCESSION   NM_001400898 XM_342068
VERSION     NM_001400898.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 28, 2022 this sequence version replaced XM_342068.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.952272.1,
                                           SRR26643293.9544.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-332               JAXUCZ010000001.1  266422723-266423054
            333-411             JAXUCZ010000001.1  266430059-266430137
            412-581             JAXUCZ010000001.1  266432655-266432824
            582-686             JAXUCZ010000001.1  266434370-266434474
            687-809             JAXUCZ010000001.1  266434676-266434798
            810-1103            JAXUCZ010000001.1  266437566-266437859
            1104-1300           JAXUCZ010000001.1  266437997-266438193
            1301-1415           JAXUCZ010000001.1  266439834-266439948
            1416-1492           JAXUCZ010000001.1  266440242-266440318
            1493-1685           JAXUCZ010000001.1  266440396-266440588
            1686-1855           JAXUCZ010000001.1  266441047-266441216
            1856-1996           JAXUCZ010000001.1  266441528-266441668
            1997-2087           JAXUCZ010000001.1  266442529-266442619
            2088-2231           JAXUCZ010000001.1  266443998-266444141
            2232-2372           JAXUCZ010000001.1  266445176-266445316
            2373-2476           JAXUCZ010000001.1  266446098-266446201
            2477-5398           JAXUCZ010000001.1  266446285-266449206
FEATURES             Location/Qualifiers
     source          1..5398
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q55"
     gene            1..5398
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /note="FHF complex subunit HOOK interacting protein 2A"
                     /db_xref="GeneID:361774"
                     /db_xref="RGD:1306116"
     exon            1..332
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     CDS             288..2582
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /note="family with sequence similarity 160, member B1"
                     /codon_start=1
                     /product="FHF complex subunit HOOK interacting protein 2A"
                     /protein_id="NP_001387827.1"
                     /db_xref="GeneID:361774"
                     /db_xref="RGD:1306116"
                     /translation="MFSKLTSILQHAVEALAPSLPLQEDFVYHWKAITHYYIETSDDK
                     APVTDTNIPSHLEQMLDILVQEENERESGETGPCMEYLLHHKILETLYTLGKADCPPG
                     MKQQVLVFYTKLLGRIRQPLLPHINVHRPVQKLIRLCGEVLATPTENEEIQFLCIVCA
                     KLKQDPYLVNFFLENKSKSLMSRGALSVISEDDPKGQDPVSGDVSQCHQPQELSGATG
                     VAHAESEEEPPHQMDDLNASLDDLSVTSLPEASAIRPNQDYNLVNSLLNLTRSPDGRI
                     AVKACEGLMLLVSLPEPAAAKCLAQSTCLCELLTGRLTSLYKALPQSVDPLDIETVEA
                     VNWGLDSYSHKEDTSAFPGKRALISFLSWFDYCDQLIKEAQKTAAVALAKAIHERFFV
                     GVMEPQLMQTSEMGILTSTALLHRIVRQVTSDVLLQEMVVFILGEQREPETLSEISRH
                     PLRHRLIEHCDHISDEISIMTLRMFEHLLQKPNEHILYNLVLRNLEERNYTEYKPLCP
                     EDKDVVENGLIAGAVDLEEDPLFTDISPDNTLPNQEWICSPRASPDHPKNDGKTEVHK
                     VVNSFLCLVPDEAKSSYHVEGTGYDTYLRDAHRQFRDYCAVCLRWEWPGAPKPLEKCD
                     LEAAFFEGHFLKVLFDRMGRILDQPYDVNLQVTSVLSRLSLFPHPHTHEYLLDPYVNL
                     ASGCRSLFSVIVRVVGDLMVRIQRIQDFTPKLLLVRKRLLGLEPEGPIVDHITLLEGV
                     IVLEEFCKELAAIAFVKFHASSTP"
     exon            333..411
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            412..581
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            582..686
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            687..809
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            810..1103
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1300
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1415
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1416..1492
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1685
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1855
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1856..1996
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            1997..2087
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            2088..2231
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            2232..2372
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            2373..2476
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
     exon            2477..5398
                     /gene="Fhip2a"
                     /gene_synonym="Fam160b1; RGD1306116"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccggaaga gcccgagctc ctgccaccgt gtccgcgccg ccgccgccga gctccgtggg
       61 gccccgattg cagccgaacg tcctcggagc ctcccgccgc ggccccgcgc cctccgagtc
      121 gagccgccgc gcctcccgcc cggcctccgc cctccgctcc ccgcccgggc ccgcccgcac
      181 cggccttcac tctggagcgg tccgggcagc cgcagcaggg gcggcggcgg cgcatcgagg
      241 agctctccag gtcatcccgg gagaagctgc tgcagtcccg ggacaggatg ttctccaagc
      301 tcacgtccat cctgcagcac gccgtggagg cgcttgcacc gtctcttcca ttacaagaag
      361 attttgttta tcactggaag gcaattaccc attactacat agaaacctca gatgacaaag
      421 ccccagtgac tgatacaaac atcccatccc acctggaaca gatgctagac atactggtcc
      481 aagaagaaaa cgagcgggaa tctggagaga cagggccgtg catggaatac ctgctccatc
      541 acaagatctt ggaaacattg tacaccttag ggaaagccga ctgtcctcca ggcatgaagc
      601 agcaggtcct ggtgttctac accaagctcc tggggaggat ccggcagccc ctgcttcctc
      661 acatcaatgt acacaggcct gtgcagaaat taattcgact ctgtggcgag gtccttgcta
      721 caccaacgga gaatgaagag atccagtttc tctgcatcgt gtgtgcgaag ctgaaacagg
      781 atccctacct ggtcaacttt ttcctggaga acaagtcaaa gtctctgatg tccagaggag
      841 ctctgagtgt catctcagag gatgacccaa aaggtcagga ccccgtgtca ggagacgtca
      901 gccagtgcca ccagccccag gagctgtcag gtgctactgg ggtggcgcac gcggagtccg
      961 aggaagagcc ccctcatcag atggatgact tgaatgcaag tctggatgac ctcagtgtca
     1021 cctcactgcc agaggcctct gccatccggc caaaccagga ttacaactta gtgaattctt
     1081 tgttaaacct gacaagaagt ccggacggcc ggatagctgt gaaagcgtgt gagggcttga
     1141 tgctcttggt gagcctgccg gagcccgcgg ctgccaagtg ccttgctcag agcacctgct
     1201 tgtgcgagct cctgaccggc agactcacct ccctgtacaa ggccctacct cagtcagtgg
     1261 accccttaga catcgaaacc gtggaggcag ttaactgggg gttggactcc tacagtcata
     1321 aagaagacac gtcagcgttc ccgggaaagc gggccttaat ttcattcctt tcctggtttg
     1381 attactgtga tcagctcatc aaggaggccc aaaagactgc ggctgttgct ctcgccaaag
     1441 ccatccatga aaggttcttc gttggtgtca tggaacccca gctgatgcag acctctgaga
     1501 tggggattct gacgtcaaca gccctgctgc accggattgt tcggcaagtg acctcggacg
     1561 tcctgcttca ggaaatggtg gtcttcatcc tcggagaaca gagggaacca gagactctgt
     1621 cagaaattag cagacatcct ctaagacata ggttaatcga acattgtgat cacatatctg
     1681 atgagatcag cataatgacc ctgaggatgt ttgagcattt gctacaaaaa cccaatgagc
     1741 acatcctgta caacctggtc ctaaggaatc ttgaagaaag aaactatacg gaatacaaac
     1801 ctttatgccc agaagacaag gacgtggtgg agaacgggct gatagcggga gctgtagatc
     1861 tggaggaaga tccattattt actgacattt caccagataa cactctgcca aaccaagagt
     1921 ggatctgttc accccgcgcc agcccagacc atcccaaaaa cgacggcaag acggaagtgc
     1981 acaaagtcgt caacagtttc ctctgtttag tgccagatga agcaaagtcc tcctaccacg
     2041 ttgagggcac gggctatgac acctacctcc gagacgctca caggcagttc cgagactact
     2101 gtgctgtctg cttacgatgg gagtggcctg gagcccccaa accactggag aagtgtgact
     2161 tagaagcagc cttctttgaa ggacattttt tgaaagtttt atttgacaga atgggaagaa
     2221 ttcttgatca gccgtatgat gtgaatctgc aggtgacctc cgtattgtcc agactctccc
     2281 tgttccctca tccacacaca cacgagtacc ttctggatcc ctacgtgaac ctggcctctg
     2341 gctgtaggtc tctcttctct gtgattgtca gggttgttgg agacctgatg gttcgaattc
     2401 agcgtattca agacttcacc cccaagcttc tcttagtcag aaagcgactg cttggcttgg
     2461 agcccgaagg ccccatcgtt gaccacatca cgctgctgga gggtgtgatt gtgttagagg
     2521 agttctgcaa ggagctggcg gccattgcgt ttgttaagtt ccacgcttcc tccacaccgt
     2581 gaagaactgg gtcactggat acttctccac tcagccagga gagggtaaaa agccttgtaa
     2641 atgaagtatg gcgggcggct gcactgaatg ttaggaatcc actgtgtgac tgcgcccagt
     2701 gacgcctgat gttgcttcca ttcactcgcc atgatgattc tctgtatgac tgcacgtccc
     2761 tcaaaccccg gacacagtca gactcgagga ctgaaaagct gcccaacttg ggacgtcagg
     2821 acctggctga tgcttgttcc ttcaatgtcc ttttaggcag caaagcattt tgacattctc
     2881 tgggactcag atgcttttgt attaataagc agcaaaaaaa aaaaaaaatc actaatttta
     2941 taacttttta aggttaaggt tcttatcata caaataattt aggaaaacta aatgaggaaa
     3001 aacactgttg aagaaccatc aaaagaatct ggaggagaaa acgcgcagag catcatcaac
     3061 ttcttcagct tttataagaa taacaattta atatgataaa gaaattctta atatattata
     3121 tatattttta aagaaatgtt cttttactct ggtgcacaca gccgtgcccg tggttggtcc
     3181 gtgtggctcc cggtttattt gaagctgtca ttttcgcagc agcgttgatg tacgctcact
     3241 gctcctgttt gctcgcagta ttgttttaag ccaattagca catgccgggt tgagaccccc
     3301 tccgtttgct ctctgaaagc cgctttgcga aattgcttta ccattgactt cccgtgcgca
     3361 gcagtgttag cggacccggg ctctggagca gcagtgggcg agccgagggc ctccgtgttc
     3421 acaggtctca cttggttcag tcttttgtct taagtgattc cagagagaac tttttaagtc
     3481 ttcatgttca gtttacacct taaagggttt aaggaaacag agtgtgtacg tgtgagtggt
     3541 acggatgcag ggccgtctcg gttagccaag gtgcagggca cagctgcagg acacatggac
     3601 accttgtccc ctgtctgtct gctctttagg tggctgacac cggtcgccca gctcatgtcc
     3661 tctccttact gaggtgttaa gcagcagctc tttcctcttc actgtccatc gaggtgtggg
     3721 agagagtggg acggggcagt cgccactggg ggacagccac agccacggcg ggctcggagc
     3781 ttgtctgaca cacggctccg gctgctttac tagtgttgca ggttcatctt atagctcagt
     3841 ttagctgctt agggacaaaa tgccacaaga ttccgttcca gagtgtccat ctttgttaaa
     3901 atagcaaaac cactccatct ctaccatggt gcgactctct gtcccttcaa gaaatctgtt
     3961 aggacagaca gtaagagaac cagaacggga ggagcggtcc cctcgcggcc ttcctcccac
     4021 ggctctgagc gctgagcctt ggtccccttt gttgtagtca ctgactagtt tctgcaggaa
     4081 tcccacggtc ctccatcttg agatgttgct accagctgtg tgatggtggc tttgataagg
     4141 cattgagagg caccgggtgt tccgaatgct ctcagtgctc agcaggtagc agtgaggtga
     4201 gctccagagc tacctcaccc tgcgcttcac ctggacctgt ggtccccaca cgacgggctg
     4261 ggcatagctc tgcctctgtc tgctgcaccg gaggacacgc ttctcctaag cggtcgtaat
     4321 gaccttgccc atagccagcc agggttggcc tgtcctcttc taggtttaat ttctttttca
     4381 tatttaattc agacccagag tcagcacaaa tcacagaact gagtttgctt tcatttaagg
     4441 aaaccacgag ctgcagctaa ggcttttctc acagtctcag cgatccgagg attcccgcag
     4501 actgtgctgg gtgaacagca ccccttagct ggtggtcgcc atgctgagtt ctagcctgcc
     4561 tcatgtctgt gtgagtagga aataggtgtg cacatttttt ttcaactttc taacaatata
     4621 gtctatggtt tattttcagt aatgaaccat ttttcacttg acaaaatcaa atttgtcttc
     4681 gccactttta ttgtagcgct cacgtgataa gtatgtaatg tcctcataac atgtctgtgc
     4741 aatacgaagc tgcgagtgat tcatagctct tggcctaact gtatattatt gtgtgtacat
     4801 gtgtgtatat aaatgtgtat gtatatgtat atatatctat atatctataa aaggaccaaa
     4861 atccttagct tgctcacgct gtcgctagtg taaatattgt tacatttaat tttacagggc
     4921 acaaattata gaattacttc attcttttca tggtaatgtc tccataagtt attacattac
     4981 tgtatagtta ccatttaatt atgacgttta ccgtgtaaca gaagaagtta cggtgaaatg
     5041 ctaaacccac aaactatggt aattttacat tttgggttga gcaataaagt aaaatatgca
     5101 tgtcatcgta acgcctagat agtcccactt ctgggccctg taaagtctgt cactgatgct
     5161 ctgtcggcct cctgtcttgt ttacattaaa caggatattc ggcgtgtttc ccatgagcac
     5221 cgcgtaggtc actagcagtg ttttgaaggt ctggattccc gggccaccat tgaggaggct
     5281 cttgaggtga ctctactgtc ccttccaggc aggggagatc agcctcagct ctgcgcttac
     5341 agtgcatgca ggacaaagag ggaaatcaag aaaataaatt gatgtgactt aaacgaaa
//
