LOCUS       NM_001044268            4603 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus forkhead associated phosphopeptide binding domain
            1 (Fhad1), mRNA.
ACCESSION   NM_001044268 XM_001073276 XM_017593864 XM_017603139 XM_575945
VERSION     NM_001044268.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4603)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1 and BC098024.1.
            
            On or before Sep 12, 2019 this sequence version replaced
            XM_017593864.1, XM_017603139.1, NM_001044268.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. This RefSeq transcript is based on
            transcript alignments from orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.31351.1,
                                           SRR26360181.1888127.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000005.1  159593293-159593367 c
            76-182              JAXUCZ010000005.1  159590141-159590247 c
            183-389             JAXUCZ010000005.1  159580659-159580865 c
            390-633             JAXUCZ010000005.1  159567082-159567325 c
            634-743             JAXUCZ010000005.1  159561507-159561616 c
            744-989             JAXUCZ010000005.1  159558219-159558464 c
            990-1113            JAXUCZ010000005.1  159550657-159550780 c
            1114-1244           JAXUCZ010000005.1  159549170-159549300 c
            1245-1334           JAXUCZ010000005.1  159547430-159547519 c
            1335-1439           JAXUCZ010000005.1  159545960-159546064 c
            1440-1547           JAXUCZ010000005.1  159540753-159540860 c
            1548-1631           JAXUCZ010000005.1  159538611-159538694 c
            1632-1781           JAXUCZ010000005.1  159537210-159537359 c
            1782-1977           JAXUCZ010000005.1  159534527-159534722 c
            1978-2048           JAXUCZ010000005.1  159525473-159525543 c
            2049-2186           JAXUCZ010000005.1  159524350-159524487 c
            2187-2294           JAXUCZ010000005.1  159518682-159518789 c
            2295-2402           JAXUCZ010000005.1  159515300-159515407 c
            2403-2507           JAXUCZ010000005.1  159514241-159514345 c
            2508-2681           JAXUCZ010000005.1  159507932-159508105 c
            2682-2907           JAXUCZ010000005.1  159506070-159506295 c
            2908-2992           JAXUCZ010000005.1  159503711-159503795 c
            2993-3099           JAXUCZ010000005.1  159503220-159503326 c
            3100-3259           JAXUCZ010000005.1  159500685-159500844 c
            3260-3386           JAXUCZ010000005.1  159500274-159500400 c
            3387-3516           JAXUCZ010000005.1  159494437-159494566 c
            3517-3644           JAXUCZ010000005.1  159493698-159493825 c
            3645-3740           JAXUCZ010000005.1  159490367-159490462 c
            3741-3961           JAXUCZ010000005.1  159489771-159489991 c
            3962-4127           JAXUCZ010000005.1  159488031-159488196 c
            4128-4196           JAXUCZ010000005.1  159483351-159483419 c
            4197-4250           JAXUCZ010000005.1  159480496-159480549 c
            4251-4576           JAXUCZ010000005.1  159474944-159475269 c
            4577-4603           BC098024.1         3072-3098
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..4603
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /note="forkhead associated phosphopeptide binding domain
                     1"
                     /db_xref="GeneID:500577"
                     /db_xref="RGD:1563444"
     exon            1..75
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            76..182
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..4361
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /note="forkhead-associated (FHA) phosphopeptide binding
                     domain 1"
                     /codon_start=1
                     /product="forkhead-associated domain-containing protein 1"
                     /protein_id="NP_001037733.2"
                     /db_xref="GeneID:500577"
                     /db_xref="RGD:1563444"
                     /translation="MKAYLKSPDGFFVLKKSTTIGKHEDSDLVLQSSDIDNHHALIEF
                     NEAEGTFVLQDFNTRNGTFVNECHIQNVAVKLIPGDILRFGSSGPTYELVIENPSQVS
                     CPWVRGSAPWPNPQSHLSSSPPNMPFHQGIRSASVQRSWSQGCPRPAVVPPSAPHQRP
                     MSASGKMFSFMMNPKSPVIKQVWASAMEMSEQGLTEGLAGIVPPPEIFMDQDLGQQDK
                     DDIILLLGREINRLSDFEMESKYKDAVIMNLQAEIADLSQRLSEMAAVVAAARQSNRC
                     DPRFQDLDEGDDHRQKEIESMKSQINALQKGYSQVLSQTLAERNTEIESLKNEGENLK
                     RDQAITSGMVTSLQKDVSARNEQVQQLQEEVNQLRIQNKEKEYQLEALTSRCSKLKED
                     LRKEEAQKERREAQEKELKLCRSQMQDMEKEVKKLREELKKNYTGQNVISKTLREKNK
                     VEEKLQEDSRRKLLQLQEMGNRENLIKMNLERAVGQLENFRSQVIKATFGKTKPFRDK
                     PVTDQQLIERIVQVTEDNLSFQQRKWTLQRETHLHSKQEEVVHNVEKLRVLLDKCQAC
                     MRDSCNSMDLKKEVELLQHLQLSPPVLGLQKAVLNILRVSLSWLEETEQLLGDLNIEL
                     SDSDKGFSLCLIYLLEHYKKIMIQSEELRAQVNASLETQQSLQEENLAEKEKLTEKLE
                     QEEKLKARIQQLTEEKAALEESVAEEKNKLQGDLEMTQARVHELENDLACQKEVLESS
                     VTQEKRKMREVLEAERRKAQDLENQLTQQKEISESNTYEKLKMRDTLEKEKRRIQDLE
                     NRLTKQREEIELKGQKEDILNNKLKDALLLVEDAQQMRTAESTRAEKLSLKLKETLAE
                     LEITKAKMIMAEDRLKLQQQSMKALQDERESQKHGFEEEITEYKEQIKQHSQTIVNLE
                     ERLSQVTQYYRKIEGEIATLKDSDSAQKEEVPQEFTIVPSLDSSAKEIACDHLIDDLL
                     MAQKEILSQQEIIMKLRTDLGEAHTRMSDLRGELSEKQKTELERQVALVRQQNSELSI
                     LKAKVVQTTGLVEKKDRELKVLREALRASQEKPRPYLSTEQKPRNLSQKCDISLQIEP
                     AHPDSFSSFQEEQFFSDLGAKCKGSRHEEVIQRQKKALSELRTRIKELEKANSSNHKD
                     HVNESFLELKTLRMEKNVQKILLDAKPDLTTFSRVEIRPPLNGPFSSGSPFAMEKSMK
                     TDAAEALELSEKLYTDMIKTLGSLMNIKDMSSHMSLKHLSPKERERVNHLRQKDLDLV
                     FDKITQLKTRLQRKEELVRGYEWELEQLRHSKVSVQMYQTQVAKLEDDIHKEAEEKAL
                     LKEALDRTEQQLSQEKRLNRAFKQQKDRVEDQEQRNSSCSCPFKENEKQRRIFVEMVK
                     RKMQDSSLQAGAKKATLKTGQERETKKEACKPTQSLSFIKPGGKN"
     exon            183..389
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            390..633
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            634..743
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            744..989
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1113
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1244
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1334
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1335..1439
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1440..1547
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1631
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1632..1781
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1782..1977
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2048
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2049..2186
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2187..2294
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2295..2402
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2403..2507
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2508..2681
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2682..2907
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2908..2992
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            2993..3099
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3100..3259
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3260..3386
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3387..3516
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3517..3644
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3645..3740
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3741..3961
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            3962..4127
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            4128..4196
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            4197..4250
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
     exon            4251..4577
                     /gene="Fhad1"
                     /gene_synonym="RGD1563444"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggtctgg caagcaactc ccagcccgcg gggctctcgg aagagaacag agccccagct
       61 tcctcctcct gccagggaaa tcagaaagaa tgaaagcgta tttgaagagc cctgacggtt
      121 tttttgtcct gaagaaaagc accaccatcg gcaagcatga agattcagac cttgtcttac
      181 agtcctcaga cattgacaac caccacgcgc tcatcgaatt caacgaggcc gagggcacct
      241 tcgtccttca ggactttaac acccgcaacg gcacgtttgt caacgagtgc cacattcaga
      301 atgtggcagt gaagctgatc cctggggaca ttctgcggtt cgggtcttcg gggccgacct
      361 acgagctggt catcgagaac ccgtcccagg tctcctgccc gtgggtgagg ggctcagcac
      421 cttggccaaa tccacagtca cacctgtcgt cctcgccccc caacatgccc ttccaccagg
      481 gcatccggtc agcctcggta caaagaagtt ggtcgcaggg ttgtcccaga cccgccgtgg
      541 tccccccatc tgctcctcac cagcggccca tgagtgccag tgggaagatg ttttccttta
      601 tgatgaaccc aaagtctcct gtcatcaagc aagtgtgggc cagcgccatg gagatgtcag
      661 agcaaggctt gaccgaggga ctcgccggga tagtacctcc ccccgagatc ttcatggacc
      721 aggacctagg ccagcaagac aaggacgata tcatcctgct actggggaga gagattaacc
      781 ggctctctga ctttgaaatg gagtccaaat ataaagacgc ggtgatcatg aacctgcagg
      841 ctgagattgc cgacctgagt caaaggttgt ctgagatggc tgcagttgtt gccgccgcca
      901 ggcagagcaa caggtgtgac ccccggttcc aggacctgga tgaaggggac gatcacaggc
      961 agaaggagat tgagagcatg aaaagccaga tcaatgctct tcaaaaaggc tatagccagg
     1021 tgctgagtca gaccctggcg gagcgcaaca cggaaatcga atccctgaag aacgagggcg
     1081 agaacttaaa gagagaccag gccatcacat cagggatggt gacatcgtta cagaaagacg
     1141 tgtcagcgcg caacgagcaa gttcagcagc tgcaggagga ggtaaatcaa ctgagaatcc
     1201 agaacaagga gaaggagtac cagctggaag ccctgacctc caggtgttca aagctgaaag
     1261 aagatctgag aaaggaagag gctcagaagg aacgcaggga ggctcaggag aaagagctga
     1321 aactgtgcag aagtcaaatg caagacatgg agaaagaagt gaagaagctc agagaggaac
     1381 tgaagaagaa ctacacgggt cagaacgtca tctccaagac gctgcgagaa aagaacaagg
     1441 ttgaagagaa gcttcaggaa gattccagaa ggaaattgct tcagctgcaa gaaatgggga
     1501 acagagagaa cctcattaaa atgaatttgg aaagggcagt aggccagcta gagaacttca
     1561 gaagccaggt catcaaagcc accttcggga aaacaaagcc attccgagac aagccggtca
     1621 ccgaccagca gctgatagag aggattgtcc aagtcaccga ggacaacctc agcttccagc
     1681 agaggaagtg gaccctgcaa agggagaccc atctacactc caagcaagag gaggtcgtgc
     1741 ataacgtgga gaagctgagg gtgctgctgg acaagtgcca ggcttgcatg agagattcct
     1801 gcaatagcat ggacctgaag aaggaggtgg agctcctcca gcacctgcag ctcagcccgc
     1861 ccgtgttggg acttcagaag gctgtactga acatcctgag agtgtccctg tcctggctgg
     1921 aggagacaga gcagctgctc ggggacctca acatcgagct gtcagattcc gacaaagggt
     1981 tctctctgtg tctgatatac cttctggaac attacaagaa aattatgatc cagtccgagg
     2041 aacttcgggc ccaggtgaat gcttctctgg aaacccagca gtctctgcag gaggagaacc
     2101 tggctgaaaa ggagaagctg acagagaagc tagaacaaga agagaagctg aaagccagaa
     2161 ttcagcagct gacagaagag aaggcggctc tggaagagag cgtcgcagag gagaaaaaca
     2221 aattgcaggg ggacctggag atgacacaag ctcgggtcca tgagctggag aacgacttgg
     2281 cttgtcaaaa ggaggtcttg gagagcagtg tgactcaaga gaaaaggaaa atgcgggaag
     2341 tgctggaggc agaaaggagg aaggcacaag acctggagaa tcagctgacc cagcagaagg
     2401 agatctcaga gagtaacacg tacgagaaac tcaagatgag agacactctg gagaaggaga
     2461 agaggaggat acaggacctg gagaatcgcc tgaccaagca aagagaggag atagaattaa
     2521 aggggcagaa agaggacatc ttaaataaca aattgaagga cgccctgctc ctggtggagg
     2581 acgctcagca gatgaggaca gccgagagta ccagggccga gaagctctcc ctgaagttaa
     2641 aggaaacctt agcagagctg gaaataacca aggcaaaaat gattatggcg gaggatcggc
     2701 tgaagctgca gcagcagtcg atgaaggccc tgcaggatga gcgggaatcc cagaagcacg
     2761 gcttcgagga ggaaatcacg gagtacaaag agcaaatcaa acagcactcg cagaccatcg
     2821 tgaacctgga ggaaaggctc agccaagtga ctcagtacta caggaaaata gaaggagaga
     2881 tagcaacatt gaaagacagc gattcagctc aaaaggagga agtgccccaa gagttcacca
     2941 tagtaccctc actggacagc agtgccaaag aaatagcgtg cgaccacctg atagatgact
     3001 tactaatggc tcagaaggaa atcctgtctc agcaagagat tatcatgaag ctgaggacag
     3061 acctcgggga agcccacacg cggatgtcag acctgagagg ggagctgagc gagaagcaga
     3121 agacagagct ggagcggcag gtggccctgg tgcggcagca gaacagtgag ctgagcattc
     3181 tcaaggcaaa ggtggtgcag acgaccggcc tggtggagaa gaaggaccgg gaactgaagg
     3241 tcctcaggga ggcgctcagg gcttcccaag agaaacccag accctacctg agcacggagc
     3301 agaagcctag gaacctgagc cagaagtgtg acatctcatt gcagatagag ccagcccacc
     3361 cagattcatt ctccagcttc caagaggagc agttcttcag tgacctgggg gccaagtgca
     3421 aagggtctcg acacgaggaa gtcatccaac ggcagaagaa ggccctgtct gaactccgaa
     3481 cgcgaatcaa agaactggag aaggccaact cctccaatca taaagaccat gtgaatgagt
     3541 cgttcctaga gctcaagacc ctccgaatgg aaaaaaacgt acagaaaata ttattagatg
     3601 caaagcccga cctgacaact ttctcaagag tagagatccg accgcctttg aatggccctt
     3661 tcagctcggg ctcccccttt gccatggaga agtccatgaa gacggatgca gcggaagcct
     3721 tagagctcag cgagaagctg tacacggaca tgatcaagac gctcggcagc ctgatgaaca
     3781 tcaaggacat gtccagccac atgtccctga agcacctctc cccgaaagag cgggagaggg
     3841 tcaaccacct ccgacagaag gacctggacc tagtgtttga taagatcact cagctcaaga
     3901 cccggcttca gaggaaagag gagctcgtga ggggatatga gtgggaactg gagcagctca
     3961 ggcatagcaa agtgtccgtt cagatgtacc agacacaggt agcgaagctg gaggacgata
     4021 tccacaaaga ggccgaggaa aaggcactgc tgaaggaggc cctggaccgc acagagcagc
     4081 agctaagcca ggaaaagaga ctcaacaggg ccttcaagca gcagaaggat cgagtagagg
     4141 atcaggagca gagaaactca tcctgcagct gccccttcaa agaaaatgag aaacagagac
     4201 gcatattcgt agagatggtc aagagaaaga tgcaggactc gagtctccag gctggagcca
     4261 agaaagccac cctgaagaca gggcaagaga gagagacgaa gaaggaggca tgcaagccca
     4321 cccagagcct ttcattcatt aaacccggtg gaaagaacta gaaaaacgca ccgtcccagg
     4381 gcttcacgtg atcctgactc tccaggaaca agtaccgagg gactttttgt aacatgttaa
     4441 atatggatgc ttggacgttt tgcattctag gttaatattt tccacagaac attgttttgg
     4501 actatgtgag gagaagacct ttaaaaatta tccattaatg tatataaatg cacgtatata
     4561 aatatgtcta tagcgcaaaa aaaaaaaaaa aaaaaaaaaa aaa
//
