LOCUS       XM_039083446            2578 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FER tyrosine kinase (Fer), transcript
            variant X21, mRNA.
ACCESSION   XM_039083446
VERSION     XM_039083446.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083446.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2578
                     /gene="Fer"
                     /gene_synonym="Fert2; Flk; Flk_retired"
                     /note="FER tyrosine kinase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 17 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:301737"
                     /db_xref="RGD:1306273"
     CDS             161..1423
                     /gene="Fer"
                     /gene_synonym="Fert2; Flk; Flk_retired"
                     /codon_start=1
                     /product="tyrosine-protein kinase Fer isoform X9"
                     /protein_id="XP_038939374.1"
                     /db_xref="GeneID:301737"
                     /db_xref="RGD:1306273"
                     /translation="MGFGSDLKNSQEAVLKLQDWELRLLETVKKFMALRIKSDKEYAY
                     TLQNLCNQVDKDSTVQVNYVSNVSKSWLLMIQQTEQLSRIMKTHAEDLNSGPLHRLTM
                     MIKDKQQVKKSYVGIHQQIEAEMIKVTKTELEKLKSSYRQLIKEMNSAKEKYKEALAK
                     GKETEKAKERCDKATMKLHMLHNQYVLALKGAQLHQSQYYDTTLPLLLDSVQKMQEEM
                     IKALKGIFDEYSEITSLVTEEIVNVHKEIQMSVDQIDPSTEYNDFIDVHRTTAAKEQE
                     IEFDTSLLEENENLQANEIMWNNLTADSLQVMLKTLAEELTQTQQMLLHKEAAVLELE
                     KRIEESSETCAKKSDIVLLLGQKQALEELKQSVQQLRCTEAKCAAQKELLEQKVQEND
                     GKEPPPVVNYEEDARSVTSMIASRFRIL"
ORIGIN      
        1 cgggactcgc gacggcggcg tctattggct gaagcagtcc ccgtgacgcc gggtggcgac
       61 tggctcccgg gtctgagggg ctcctgcttg tcaggttcta gatatgtgct gactaacagg
      121 ctcacgtgca cagtgtggag gtcaagctgt atcttacaaa atgggatttg ggagtgacct
      181 gaagaactca caggaagctg tgctaaagct gcaagactgg gaactacggc tgctggagac
      241 agtgaagaaa ttcatggctc tgagaataaa aagcgataaa gaatatgcat acacgctgca
      301 gaacctctgt aatcaagttg ataaagacag cacggtgcag gtgaattacg tcagcaacgt
      361 gtccaagtct tggctactga tgattcagca gacagagcaa ctcagtagga taatgaagac
      421 ccatgcagag gacttgaact ctggaccctt gcacaggctc accatgatga tcaaggacaa
      481 gcagcaagtg aaaaagagct atgtaggcat tcatcagcag atagaggccg agatgatcaa
      541 ggtcacaaag acagaattgg agaagttgaa atccagctat cgacaattaa taaaagagat
      601 gaattctgcc aaagagaaat ataaagaagc cttagccaaa gggaaggaaa cagaaaaggc
      661 caaggagcgc tgtgacaaag ccacaatgaa acttcatatg ctgcataacc agtacgtgct
      721 ggccctgaag ggggcgcagc tccaccagag ccagtattac gacaccacac ttcctctgct
      781 gctggactcc gtgcaaaaga tgcaagaaga aatgataaaa gcactaaaag gcatatttga
      841 cgagtatagc gagataacca gccttgtcac agaggagata gtgaatgtcc acaaggaaat
      901 tcaaatgtct gttgaccaga tagatcctag cactgagtat aatgacttca tcgacgtcca
      961 cagaacaaca gctgctaagg agcaagaaat cgaatttgat acttccttat tagaagaaaa
     1021 tgaaaatctt caggcaaacg agatcatgtg gaataactta acagcagaca gtttgcaagt
     1081 aatgctgaag actttagcag aagagctcac acagacccag cagatgcttt tacacaagga
     1141 ggcggcggtc ctggagctag agaagaggat tgaggaatct tctgagacct gcgcaaagaa
     1201 gtctgacatt gtgcttcttc tgggccaaaa gcaggcactt gaagagctga aacagtcagt
     1261 ccagcaattg cgatgcactg aggcaaagtg cgcagcacag aaagaattgc tggagcaaaa
     1321 agtacaggaa aatgatggga aagagccacc tcctgtggtg aattacgaag aagatgcgcg
     1381 gtcagtcaca tctatgattg cttccagatt tagaattttg tgattctgtg agccttggtg
     1441 agtgcctggc acctagtaac tcctcactga atactgagag aataaatgaa tagagccaag
     1501 ctgtaagtaa gcaacaaaga taggaaaatg taagtaaatt tattcagaaa tagaagttaa
     1561 agttacctgt ttaaaatgag ctagaaaaat gtgagaccga cagagactat caagaaacat
     1621 tagcagtgtt ccctgatttc atccttactt aagcagaaga gaattagtca atctagagta
     1681 tctggggact tccttctggg aagagtgctt tgggtaaggc tctcacctga gaggtggagt
     1741 gacagaaatg tcctagaggg atttggatgt cagtcctgac ccagctcctt actgagggcg
     1801 tgaccgggaa gttagctagc ctctgagtac ctcagcttga gcagctataa actcagggcc
     1861 aatgagggac gcaatggcgg atgctcatag ccaggacagt gctagggcat aagaagcttt
     1921 ctctcccagt tcctcccttc atttattaag ggaaactatg aaatcatcat ttgaatacaa
     1981 aatgagacat ttgtgatggg catgatataa acatgagtgg tttttatgca caacaaagtg
     2041 aaaagtggac agacacacag gcaagtagta gaaattgaac agaaatgaga ctctactgtg
     2101 attgacgtgg gctgtcacaa tgtggcacgt gctggccttg aactcacatt tcgttcagtc
     2161 ctaccaaatg gcaggattgc cagcatgtgc caccagacct ggccttagtt ctttcaaata
     2221 tgtaaattaa agagtatgaa attttaaagg agaaatgttt gtcagaatta tggtccaagt
     2281 aaggtttgaa accaagacct gtctccactg cctttaaatt gtttttcctg ctttgtttcc
     2341 atggagattt atgaacttta ttccaccgaa aaccctgtac tggccaaggg tggtgatgca
     2401 cacgtggaag ctcagtactc tcctggcaga agccatgggg ctacaagcat gcagccagcc
     2461 aggaccctgg agagagcctg gacgtgtgtg cgcgtgcaca cacacacaca cacacacaca
     2521 cacacgcaca cacacacaca catacacata tacacacaca cacacgcacg tgcacacc
//
