LOCUS       NM_001401039            2358 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ferredoxin-fold anticodon binding domain
            containing 1 (Fdxacb1), transcript variant 1, mRNA.
ACCESSION   NM_001401039 XM_006243031
VERSION     NM_001401039.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 1, 2022 this sequence version replaced XM_006243031.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1948135.1,
                                           SRR26360176.2332799.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               JAXUCZ010000008.1  60009818-60010030
            214-355             JAXUCZ010000008.1  60010244-60010385
            356-559             JAXUCZ010000008.1  60011624-60011827
            560-718             JAXUCZ010000008.1  60012171-60012329
            719-2358            JAXUCZ010000008.1  60012986-60014625
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q23"
     gene            1..2358
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /note="ferredoxin-fold anticodon binding domain containing
                     1"
                     /db_xref="GeneID:315646"
                     /db_xref="RGD:1562252"
     exon            1..213
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..1895
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ferredoxin-fold anticodon-binding domain-containing
                     protein 1"
                     /codon_start=1
                     /product="ferredoxin-fold anticodon-binding
                     domain-containing protein 1 isoform 1"
                     /protein_id="NP_001387968.1"
                     /db_xref="GeneID:315646"
                     /db_xref="RGD:1562252"
                     /translation="MVPRRLLLVGEGNFSFAASLIDGLDPDVSVTATGFQHRADLEGD
                     PVALENLRRLRERGVEVRFGVDCTQLADEREFDRIYFNFPHCGRKAGVAKNRELLAKF
                     FQSCADVLAKEGEVHVALCRGQGGTPADKPQREWHNSWQVVAMAALGGLILSDVCPFS
                     CEAVPGYKCTGYRSQDRPFHIEGALTYIFTQSLPFESSRPRTFRVRLEDRWFYFTEPE
                     ALLGKLNRRFLEAPSCHPIRTINEKLIAELGKTFPLKRLRCPLPLLSQGGPSVLPPVA
                     CDLLPTFWICLHEDSSCSELLNGEITEDMEEIPDSGSECTLPKSPARDGCKAAQEGVC
                     EQVKLRLRPSLLVHAEPVIHSPEFLPGSLYVLSGPVFRKCHILPFTMPAFHETLFILG
                     FNRNTKESCLLPLLDHLKDTLGNFLTQTLQEDSSLSTSVDFVLQPNGKDYVIHVKSLD
                     FGPDCTENLIIGSIVTSTIVKHKHQCFVFVSINLDLLVMLAYDISDWRILWTFDNRFL
                     KRFAPGKIEHFKSYSLYPPCYVHDVSFWLDEKNTFDELEFHTVARAVSRDTIVSIQFL
                     DRFQHPETQQVSLCYRLTYQTCDKALTPQLAAAMQSQFRKEIQRELHVSPR"
     exon            214..355
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /inference="alignment:Splign:2.1.0"
     exon            356..559
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /inference="alignment:Splign:2.1.0"
     exon            560..718
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /inference="alignment:Splign:2.1.0"
     exon            719..2358
                     /gene="Fdxacb1"
                     /gene_synonym="RGD1562252"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtgcgccct agagatcgcc gtaagggagc cggaggaggc catggttcct aggcgcctcc
       61 tgttggttgg ggaggggaat ttctccttcg ccgcttctct gatcgacggc ctggatcccg
      121 acgtcagtgt taccgctacc ggcttccaac accgggcgga tctggaggga gatcccgtag
      181 ctctagagaa cctacggcgc ctgcgcgaac gaggtgttga agtgcgtttt ggtgtggatt
      241 gcacccagct agcagacgag agggagtttg atcgaattta tttcaatttc ccgcactgtg
      301 gacgaaaagc tggagtagct aagaacaggg aactgcttgc caagtttttc cagagctgtg
      361 ctgatgtcct tgcaaaggaa ggagaagtcc atgtggcact gtgtagagga caaggtggaa
      421 ctcctgctga caagccccag agagagtggc acaacagttg gcaagtagtt gccatggcag
      481 ccctgggagg gctcatttta agtgatgtgt gtccctttag ctgtgaggct gtgccaggat
      541 acaagtgtac tgggtatagg agtcaggata ggccttttca tatagaaggt gctttgacct
      601 atatcttcac ccagagccta ccctttgaaa gctctcggcc cagaacattc agagtcagac
      661 tggaggaccg atggttttac tttacagaac cagaagccct tctaggaaag ctgaacaggc
      721 ggttccttga agcaccttcc tgtcatccta tcagaaccat caatgagaaa ctcattgctg
      781 aattgggcaa aacttttccc ttaaaaaggc tgaggtgtcc cctccctttg ttgtcacagg
      841 gaggccccag tgtcctccct ccagtagcct gtgaccttct gcctaccttt tggatttgtc
      901 tacatgaaga tagctcatgt tctgagctcc tgaatggtga aataacagaa gacatggaag
      961 aaattcctga ctcaggttca gagtgtaccc ttcccaagag tcctgcgaga gatggctgca
     1021 aagccgctca ggaaggagtc tgtgaacagg tcaagctccg cctcaggcct tctcttcttg
     1081 tccacgctga acctgtcatc cattctccag aattcctccc aggctctctg tacgtcctca
     1141 gtggacctgt ctttcggaag tgccatattt taccctttac gatgccagca ttccacgaga
     1201 ctttattcat ccttgggttt aataggaata cgaaggagag ctgccttctg ccactgctgg
     1261 atcacctgaa ggatactcta ggtaactttc tgacccagac gttgcaggag gactccagtt
     1321 tgagcacgtc agtggatttt gtccttcaac caaatggaaa ggattatgta attcatgtga
     1381 agtctcttga ttttggccca gattgtactg agaatcttat tattgggtct attgtcacat
     1441 ccacgattgt taaacacaaa caccagtgtt ttgtgtttgt ttctataaat ttggacttat
     1501 tggttatgct tgcctatgat atttctgatt ggagaatatt gtggactttt gataaccgtt
     1561 tcctgaaaag atttgcccct gggaaaatag aacactttaa aagctattct ctttatcctc
     1621 catgctatgt gcatgatgtt agtttctggt tagatgaaaa gaacacattt gatgaactgg
     1681 agtttcacac tgtagcccga gcagtgtccc gggacactat cgtttccata cagttcctcg
     1741 atcgtttcca gcatccagag actcaacagg tcagtctctg ctacagattg acctatcaga
     1801 cttgtgataa ggcactcacc ccacagctgg cagcagcaat gcagtcccag ttcaggaaag
     1861 agattcaaag agagctccac gtttcacctc gataggctgc agtgtatgtt gtatgtgggt
     1921 gaaaaagagc aatttgaagc ttgctccttt ccagactctg gtgggttgtt ttgtttgttt
     1981 tgtctgtttt gtgtctgttt tttttgtggt gacccaagta ttgttgatgg accctaaaga
     2041 ttttatacca tttaaatgta tagatgggcc aatgtatagg tgatggtgtg ctttgattct
     2101 ggtactcagg ggacctgtca aggctacata gtgaagcctt gtctaaaaaa aaaaaaacaa
     2161 accaaccgaa caaaaacacc cctacaaccc aatggctggt gactttattg tgcttcagtt
     2221 ttttgatctc gagtaatgac tgaaacaaca aacaatataa gaattttgta ctttagctgc
     2281 tctcttgctg aagaggctat ggaacctgta catctcgtca cgtgtattta aatatatata
     2341 ccatatatac atatacca
//
